/*=========================================================================
Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
+ Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
#ifndef CLITKIMAGECOMMON_H
#define CLITKIMAGECOMMON_H
-/**
- -------------------------------------------------------------------
- * @file clitkImageCommon.h
- * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
- * @date 07 Sep 2007 11:30:10
-
- * @brief
-
- -------------------------------------------------------------------*/
// clitk
-#include "clitkCommon.h"
+//#include "clitkCommon.h"
// itk
#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkImageSeriesReader.h"
#include "itkImageFileWriter.h"
-#include "gdcmFile.h"
-#include "gdcmFileHelper.h"
-
-
-namespace clitk {
-
- //--------------------------------------------------------------------
- // New Image creation (no allocation)
- template<class PixelType>
- typename itk::Image<PixelType,1>::Pointer NewImage1D(int size, double spacing=1.0);
- template<class PixelType>
- typename itk::Image<PixelType,2>::Pointer NewImage2D(int sx, int sy, double dx=1.0, double dy=1.0);
- template<class PixelType>
- typename itk::Image<PixelType,3>::Pointer NewImage3D(int sx, int sy, int sz, double dx=1.0, double dy=1.0, double dz=1.0);
- template<class PixelType>
- typename itk::Image<PixelType,4>::Pointer NewImage4D(int sx, int sy, int sz, int st, double dx=1.0, double dy=1.0, double dz=1.0, double dt=1.0);
-
- template<class ImageType>
- typename ImageType::Pointer NewImageLike(const typename ImageType::Pointer input, bool allocate=true);
-
- template<class ImageType>
- void CopyValues(const typename ImageType::Pointer input, typename ImageType::Pointer output);
- //--------------------------------------------------------------------
- // New Image creation (with allocation)
-
- //--------------------------------------------------------------------
- // Read an Write image
- // template<class ImageType>
- // typename ImageType::Pointer ReadImage(const std::string & filename, const bool verbose=false);
- template<typename ImageType>
- typename ImageType::Pointer readImage(const std::string & filename, const bool verbose=false);
- template<typename ImageType>
- typename ImageType::Pointer readImage(const std::vector<std::string> & filenames, const bool verbose=false);
- template<class ImageType>
- void writeImage(const typename ImageType::Pointer image, const std::string & filename, const bool verbose=false);
-// template<class ImageType>
+
+namespace clitk
+{
+
+//--------------------------------------------------------------------
+// New Image creation (no allocation)
+template<class PixelType>
+typename itk::Image<PixelType,1>::Pointer NewImage1D(int size, double spacing=1.0);
+template<class PixelType>
+typename itk::Image<PixelType,2>::Pointer NewImage2D(int sx, int sy, double dx=1.0, double dy=1.0);
+template<class PixelType>
+typename itk::Image<PixelType,3>::Pointer NewImage3D(int sx, int sy, int sz, double dx=1.0, double dy=1.0, double dz=1.0);
+template<class PixelType>
+typename itk::Image<PixelType,4>::Pointer NewImage4D(int sx, int sy, int sz, int st, double dx=1.0, double dy=1.0, double dz=1.0, double dt=1.0);
+
+template<class ImageType>
+typename ImageType::Pointer NewImageLike(const typename ImageType::Pointer input, bool allocate=true);
+
+template<class ImageType>
+void CopyValues(const typename ImageType::Pointer input, typename ImageType::Pointer output);
+//--------------------------------------------------------------------
+// New Image creation (with allocation)
+
+//--------------------------------------------------------------------
+// Read an Write image
+// template<class ImageType>
+// typename ImageType::Pointer ReadImage(const std::string & filename, const bool verbose=false);
+template<typename ImageType>
+typename ImageType::Pointer readImage(const std::string & filename, const bool verbose=false);
+template<typename ImageType>
+typename ImageType::Pointer readImage(const std::vector<std::string> & filenames, const bool verbose=false);
+template<class ImageType>
+void writeImage(const typename ImageType::Pointer image, const std::string & filename, const bool verbose=false);
+// template<class ImageType>
// void writeConstImage(const typename ImageType::ConstPointer image, const std::string & filename, const bool verbose=false);
- template<class ImageType>
- void writeImage(const ImageType* image, const std::string & filename, const bool verbose=false);
-
- //--------------------------------------------------------------------
- // Read/print image header
- itk::ImageIOBase::Pointer readImageHeader(const std::string & filename,bool exit_on_error=true);
- void printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level=0);
-
- //--------------------------------------------------------------------
- // Determine pixetype and dimension of an image file
- void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType);
-
- //--------------------------------------------------------------------
- // Determine pixetype, dimension and number of pixel components of an image file
- void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType, int & components);
-
- //--------------------------------------------------------------------
- // Read a dicom header
- gdcm::File * readDicomHeader(const std::string & filename, const bool verbose=false);
-
- //--------------------------------------------------------------------
- template<class ImageType>
- int ComputeHowManyDifferentIntensity(const typename ImageType::Pointer & image,
- std::vector<typename ImageType::PixelType> & listOfIntensities);
- template<class InputImageType, class MaskImageType>
- void ComputeWeightsOfEachClasses(const typename InputImageType::Pointer & input,
- const typename MaskImageType::Pointer & mask,
- const std::vector<typename MaskImageType::PixelType> & listOfIntensities,
- std::map<typename MaskImageType::PixelType,
- std::map<typename InputImageType::PixelType, double> > & mapOfLabelsAndWeights);
+template<class ImageType>
+void writeImage(const ImageType* image, const std::string & filename, const bool verbose=false);
+
+//--------------------------------------------------------------------
+// Read/print image header
+itk::ImageIOBase::Pointer readImageHeader(const std::string & filename,bool exit_on_error=true);
+void printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level=0);
+
+//--------------------------------------------------------------------
+// Determine pixetype and dimension of an image file
+void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType);
+
+//--------------------------------------------------------------------
+// Determine pixetype, dimension and number of pixel components of an image file
+void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType, int & components);
+
+//--------------------------------------------------------------------
+template<class ImageType>
+int ComputeHowManyDifferentIntensity(const typename ImageType::Pointer & image,
+ std::vector<typename ImageType::PixelType> & listOfIntensities);
+template<class InputImageType, class MaskImageType>
+void ComputeWeightsOfEachClasses(const typename InputImageType::Pointer & input,
+ const typename MaskImageType::Pointer & mask,
+ const std::vector<typename MaskImageType::PixelType> & listOfIntensities,
+ std::map<typename MaskImageType::PixelType,
+ std::map<typename InputImageType::PixelType, double> > & mapOfLabelsAndWeights);
+
+//--------------------------------------------------------------------
+template<class ImageType1, class ImageType2>
+bool HaveSameSpacing(typename ImageType1::ConstPointer A,
+ typename ImageType2::ConstPointer B);
+
+template<class ImageType1, class ImageType2>
+bool HaveSameSpacing(typename ImageType1::Pointer A,
+ typename ImageType2::Pointer B);
+
+//--------------------------------------------------------------------
+template<class ImageType1, class ImageType2>
+bool HaveSameSize(typename ImageType1::ConstPointer A,
+ typename ImageType2::ConstPointer B);
+
+template<class ImageType1, class ImageType2>
+bool HaveSameSize(typename ImageType1::Pointer A,
+ typename ImageType2::Pointer B);
+
+//--------------------------------------------------------------------
+template<class ImageType1, class ImageType2>
+bool HaveSameSizeAndSpacing(typename ImageType1::ConstPointer A,
+ typename ImageType2::ConstPointer B);
+
+template<class ImageType1, class ImageType2>
+bool HaveSameSizeAndSpacing(typename ImageType1::Pointer A,
+ typename ImageType2::Pointer B);
#include "clitkImageCommon.txx"
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff