#define VVIMAGEREADER_CXX
#include <itkImageFileReader.h>
+#include "gdcmImageHelper.h"
#include "vvImageReader.h"
#include "vvImageReader.txx"
#include "clitkTransformUtilities.h"
mLastError = "";
mType = UNDEFINEDIMAGETYPE;
mSlice = 0;
+ mPatientCoordinateSystem = false;
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvImageReader::SetPatientCoordinateSystem(bool patientCoordinateSystem)
+{
+ mPatientCoordinateSystem = patientCoordinateSystem;
+}
+//------------------------------------------------------------------------------
+
+
//------------------------------------------------------------------------------
void vvImageReader::Update(LoadedImageType type)
{
mLastError="Unable to read file.";
} else {
reader->SetFileName(mInputFilenames[0]);
+ gdcm::ImageHelper::SetForcePixelSpacing(true);
reader->ReadImageInformation();
if (mInputFilenames.size() > 1)
Update(reader->GetNumberOfDimensions()+1,reader->GetComponentTypeAsString(reader->GetComponentType()),type);
+ else if (reader->GetNumberOfComponents() > 1 && type != VECTORFIELD && type != VECTORFIELDWITHTIME)
+ Update(reader->GetNumberOfDimensions()+1,reader->GetComponentTypeAsString(reader->GetComponentType()),VECTORPIXELIMAGE);
else
Update(reader->GetNumberOfDimensions(),reader->GetComponentTypeAsString(reader->GetComponentType()),type);
}
f.open(filename.c_str());
if(!itkMatRead && f.is_open()) {
itkMatRead = true;
- std::vector<std::string> l;
- l.push_back(filename);
- itkMat = clitk::createMatrixFromElastixFile<3>(l, true);
+ itkMat = clitk::createMatrixFromElastixFile<3>(filename, true);
}
f.close();