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[FrontAlgorithms.git] / examples / RegionGrow_Mori.cxx

diff --git a/examples/RegionGrow_Mori.cxx b/examples/RegionGrow_Mori.cxx
index 7fd51b4427fd73942c95e46d8ba51c6a44586ea5..2c36e8b6c1f5809dd9150740c8d61786efed8c3d 100644 (file)
--- a/examples/RegionGrow_Mori.cxx
+++ b/examples/RegionGrow_Mori.cxx
@@ -1,28 +1,49 @@
+#include <chrono>
+#include <iomanip>
 #include <itkCommand.h>
 #include <itkImage.h>
 #include <itkImageFileReader.h>
 #include <itkImageFileWriter.h>
+#include <itkBinaryThresholdImageFilter.h>
 
 #include <fpa/Image/MoriRegionGrow.h>
 
 // -------------------------------------------------------------------------
 static const unsigned int VDim = 3;
-typedef short                          TPixel;
-typedef itk::Image< TPixel, VDim >     TImage;
-typedef itk::ImageFileReader< TImage > TReader;
-typedef itk::ImageFileWriter< TImage > TWriter;
-typedef fpa::Image::MoriRegionGrow< TImage, TImage > TFilter;
-typedef itk::ImageFileWriter< TFilter::TAuxiliaryImage > TAuxWriter;
+typedef short                                             TPixel;
+typedef itk::Image< TPixel, VDim >                        TImage;
+typedef itk::ImageFileReader< TImage >                    TReader;
+typedef itk::ImageFileWriter< TImage >                    TWriter;
+typedef fpa::Image::MoriRegionGrow< TImage, TImage >      TFilter;
+typedef itk::BinaryThresholdImageFilter< TImage, TImage > TThreshold;
+
+// -------------------------------------------------------------------------
+class ShowProgressObject
+{
+public:
+  ShowProgressObject( itk::ProcessObject* o )
+    {
+      this->m_Process = o;
+    }
+  void ShowProgress( )
+    {
+      std::cerr
+        << "\rProgress " << std::fixed << std::setprecision( 2 )
+        << ( this->m_Process->GetProgress( ) * 100 )
+        << " %" << std::flush;
+    }
+  itk::ProcessObject::Pointer m_Process;
+};
 
 // -------------------------------------------------------------------------
 int main( int argc, char* argv[] )
 {
   // Get arguments
-  if( argc < 7 + VDim )
+  if( argc < 6 + VDim )
   {
     std::cerr
       << "Usage: " << argv[ 0 ]
-      << " input_image output_image auxiliary_image lower upper delta";
+      << " input_image output_image lower upper delta";
     for( unsigned int i = 0; i < VDim; ++i )
       std::cerr << " s_" << i;
     std::cerr << std::endl;
@@ -31,26 +52,63 @@ int main( int argc, char* argv[] )
   } // fi
   std::string input_image_filename = argv[ 1 ];
   std::string output_image_filename = argv[ 2 ];
-  std::string auxiliary_image_filename = argv[ 3 ];
-  TPixel lower = std::atof( argv[ 4 ] );
-  TPixel upper = std::atof( argv[ 5 ] );
-  TPixel delta = std::atof( argv[ 6 ] );
+  TPixel lower = std::atof( argv[ 3 ] );
+  TPixel upper = std::atof( argv[ 4 ] );
+  TPixel delta = std::atof( argv[ 5 ] );
 
   TReader::Pointer reader = TReader::New( );
   reader->SetFileName( input_image_filename );
+  try
+  {
+    reader->Update( );
+  }
+  catch( std::exception& err )
+  {
+    std::cerr << "ERROR: " << err.what( ) << std::endl;
+    return( 1 );
+
+  } // yrt
 
   TFilter::Pointer filter = TFilter::New( );
   filter->SetInput( reader->GetOutput( ) );
   filter->SetThresholdRange( lower, upper, delta );
-  TImage::IndexType seed;
+  TImage::PointType pnt;
   for( int i = 0; i < VDim; ++i )
-    seed[ i ] = std::atoi( argv[ i + 7 ] );
-  filter->SetSeed( seed );
-  filter->SetInsideValue( 255 );
-  filter->SetOutsideValue( 0 );
+    pnt[ i ] = std::atof( argv[ i + 6 ] );
 
+  TImage::IndexType seed;
+  if( !( reader->GetOutput( )->TransformPhysicalPointToIndex( pnt, seed ) ) )
+  {
+    std::cerr << "ERROR: seed outside image." << std::endl;
+    return( 1 );
+
+  } // fi
+  filter->AddSeed( seed );
+
+  // to test ProgressReporter
+  /* TODO
+     ShowProgressObject progressWatch( filter );
+     typedef itk::SimpleMemberCommand< ShowProgressObject > CommandType;
+     CommandType::Pointer command = CommandType::New();
+     command->SetCallbackFunction( &progressWatch,
+     &ShowProgressObject::ShowProgress );
+     filter->AddObserver( itk::ProgressEvent( ), command );
+  */
+  std::chrono::time_point< std::chrono::system_clock > start, end;
+  start = std::chrono::system_clock::now( );
+  filter->Update( );
+  end = std::chrono::system_clock::now( );
+  std::chrono::duration< double > elapsed_seconds = end - start;
+
+  TThreshold::Pointer threshold = TThreshold::New( );
+  threshold->SetInput( filter->GetOutput( ) );
+  threshold->SetInsideValue( 255 );
+  threshold->SetOutsideValue( 0 );
+  threshold->SetLowerThreshold( 0 );
+  threshold->SetUpperThreshold( filter->GetOptimumThreshold( ) );
+  
   TWriter::Pointer writer = TWriter::New( );
-  writer->SetInput( filter->GetOutput( ) );
+  writer->SetInput( threshold->GetOutput( ) );
   writer->SetFileName( output_image_filename );
   try
   {
@@ -63,19 +121,22 @@ int main( int argc, char* argv[] )
 
   } // yrt
 
-  TAuxWriter::Pointer aux_writer = TAuxWriter::New( );
-  aux_writer->SetInput( filter->GetAuxiliaryImage( ) );
-  aux_writer->SetFileName( auxiliary_image_filename );
-  try
+  // Show data
+  TFilter::TCurve curve = filter->GetCurve( );
+  TFilter::TCurve::const_iterator data = curve.begin( );
+  for( ; data != curve.end( ); ++data )
   {
-    aux_writer->Update( );
+    std::cout << data->XValue << " " << data->YValue << " " << data->Diff1 << std::endl;
   }
-  catch( std::exception& err )
-  {
-    std::cerr << "ERROR: " << err.what( ) << std::endl;
-    return( 1 );
-
-  } // yrt
+  std::cout
+    << std::endl
+    << "# Opt: "
+    << curve[ filter->GetOptimumThreshold( ) ].XValue
+    << "("
+    << filter->GetOptimumThreshold( )
+     << ")"
+    << std::endl;
+  std::cout << "Time: " << elapsed_seconds.count( ) << "s" << std::endl;
   return( 0 );
 }