/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
- l'Image). All rights reserved. See Doc/License.txt or
- http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
-
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the above copyright notices for more information.
-
-=========================================================================*/
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
/**
-------------------------------------------------------------------
* @file clitkGuerreroVentilationGenericFilter.cxx
* @author Joël Schaerer
* @date 20 April 2009
- * @brief
+ * @brief
-------------------------------------------------------------------*/
#include "clitkGuerreroVentilationGenericFilter.h"
#include <itkBinaryGuerreroFilter.h>
#include <itkImageDuplicator.h>
+#include <itkExtractImageFilter.h>
+
//--------------------------------------------------------------------
-clitk::GuerreroVentilationGenericFilter::GuerreroVentilationGenericFilter()
+clitk::GuerreroVentilationGenericFilter::GuerreroVentilationGenericFilter()
+ :ImageToImageGenericFilter<Self>("GuerreroVentilationGenericFilter")
{
- blood_mass_factor=1.;
+ blood_mass_factor=1.;
+ InitializeImageType<2>();
+ InitializeImageType<3>();
}
//--------------------------------------------------------------------
//--------------------------------------------------------------------
-void clitk::GuerreroVentilationGenericFilter::Update () {
-
- // Determine dim, pixel type, number of components
- this->GetInputImageDimensionAndPixelType(mDim,mPixelTypeName,mNbOfComponents);
-
- // Switch by dimension
- if (mDim == 3) { Update_WithDim<3>(); return; }
- if (mDim == 2) { Update_WithDim<2>(); return; }
- std::cerr << "Error, dimension of input image is " << mDim << ", but I only work with 2 or 3." << std::endl;
- exit(0);
+template<unsigned int Dim>
+void clitk::GuerreroVentilationGenericFilter::InitializeImageType()
+{
+ ADD_IMAGE_TYPE(Dim, short);
}
//--------------------------------------------------------------------
-//This is where you put the actual implementation
-
-#include <sstream>
-#include <itkExtractImageFilter.h>
-
//--------------------------------------------------------------------
-template<unsigned int Dim>
-void clitk::GuerreroVentilationGenericFilter::Update_WithDim() {
-#define TRY_TYPE(TYPE) \
- if (IsSameType<TYPE>(mPixelTypeName)) { Update_WithDimAndPixelType<Dim, TYPE>(); return; }
- // TRY_TYPE(signed char);
- // TRY_TYPE(uchar);
- TRY_TYPE(short);
- //TRY_TYPE(ushort);
- // TRY_TYPE(int);
-// TRY_TYPE(unsigned int);
- //TRY_TYPE(float);
- // TRY_TYPE(double);
-#undef TRY_TYPE
+template<class ImageType>
+void clitk::GuerreroVentilationGenericFilter::UpdateWithInputImageType()
+{
- std::string list = CreateListOfTypes<uchar, short, ushort, int, uint, float, double>();
- std::cerr << "Error, I don't know the type '" << mPixelTypeName << "' for the input image '"
- << mInputFilenames[0] << "'." << std::endl << "Known types are " << list << std::endl;
- exit(0);
-}
-//--------------------------------------------------------------------
+ // Input should be 2
+ assert(m_InputFilenames.size() == 2);
-//--------------------------------------------------------------------
-template<unsigned int Dim, class PixelType>
-void clitk::GuerreroVentilationGenericFilter::Update_WithDimAndPixelType() {
+ // Reading input
+ typedef ImageType InputImageType;
+ typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
+ typename InputImageType::Pointer ref = this->template GetInput<InputImageType>(1);
- // Read input
- assert(mInputFilenames.size() == 2);
- typedef itk::Image<PixelType,Dim> ImageType;
- typedef itk::Image<float,Dim> OutputImageType;
- typename ImageType::Pointer input = clitk::readImage<ImageType>(mInputFilenames[0], mIOVerbose);
- typename ImageType::Pointer ref = clitk::readImage<ImageType>(mInputFilenames[1], mIOVerbose);
+ typedef itk::Image<float,InputImageType::ImageDimension> OutputImageType;
+ // typename ImageType::Pointer input = clitk::readImage<ImageType>(mInputFilenames[0], mIOVerbose);
+ //typename ImageType::Pointer ref = clitk::readImage<ImageType>(mInputFilenames[1], mIOVerbose);
+ typedef itk::BinaryGuerreroFilter<ImageType,ImageType,OutputImageType> GFilterType;
+ typename GFilterType::Pointer filter = GFilterType::New();
+ filter->SetInput1(ref);
+ filter->SetInput2(input);
+ filter->SetBloodCorrectionFactor(blood_mass_factor);
+ filter->SetUseCorrectFormula(use_correct_formula);
+ filter->Update();
- typedef itk::BinaryGuerreroFilter<ImageType,ImageType,OutputImageType> GFilterType;
- typename GFilterType::Pointer filter = GFilterType::New();
- filter->SetInput1(ref);
- filter->SetInput2(input);
- filter->SetBloodCorrectionFactor(blood_mass_factor);
- filter->SetUseCorrectFormula(use_correct_formula);
- filter->Update();
- this->SetNextOutput<OutputImageType>(filter->GetOutput());
- //clitk::writeImage<OutputImageType>(filter->GetOutput(), mOutputFilename, mIOVerbose);
- //std::cout << "Warning: removed " << filter->GetFunctor().aberant_voxels << " aberant voxels from the ventilation image"
- //<< std::endl;
+ this->SetNextOutput<OutputImageType>(filter->GetOutput());
+ //clitk::writeImage<OutputImageType>(filter->GetOutput(), mOutputFilename, mIOVerbose);
+ //std::cout << "Warning: removed " << filter->GetFunctor().aberant_voxels << " aberant voxels from the ventilation image"
+ //<< std::endl;
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff