/*=========================================================================
Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
+ Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
// clitk
#include "clitkResampleImageWithOptionsFilter.h"
-namespace clitk {
-
- //--------------------------------------------------------------------
- template<class args_info_type>
- ResampleImageGenericFilter<args_info_type>::ResampleImageGenericFilter():
- ImageToImageGenericFilter<Self>("Resample") {
- InitializeImageType<2>();
- InitializeImageType<3>();
- InitializeImageType<4>();
- }
- //--------------------------------------------------------------------
+namespace clitk
+{
+
+//--------------------------------------------------------------------
+template<class args_info_type>
+ResampleImageGenericFilter<args_info_type>::ResampleImageGenericFilter():
+ ImageToImageGenericFilter<Self>("Resample")
+{
+ InitializeImageType<2>();
+ InitializeImageType<3>();
+ InitializeImageType<4>();
+}
+//--------------------------------------------------------------------
- //--------------------------------------------------------------------
- template<class args_info_type>
- template<unsigned int Dim>
- void ResampleImageGenericFilter<args_info_type>::InitializeImageType() {
- ADD_DEFAULT_IMAGE_TYPES(Dim);
- //ADD_IMAGE_TYPE(Dim, short);
+//--------------------------------------------------------------------
+template<class args_info_type>
+template<unsigned int Dim>
+void ResampleImageGenericFilter<args_info_type>::InitializeImageType()
+{
+ ADD_DEFAULT_IMAGE_TYPES(Dim);
+ //ADD_IMAGE_TYPE(Dim, short);
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+template<class args_info_type>
+void ResampleImageGenericFilter<args_info_type>::SetArgsInfo(const args_info_type & a)
+{
+ mArgsInfo=a;
+ if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
+ SetIOVerbose(mArgsInfo.verbose_flag);
+ if (mArgsInfo.input_given) {
+ SetInputFilename(mArgsInfo.input_arg);
}
- //--------------------------------------------------------------------
-
-
- //--------------------------------------------------------------------
- template<class args_info_type>
- void ResampleImageGenericFilter<args_info_type>::SetArgsInfo(const args_info_type & a) {
- mArgsInfo=a;
- if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
- SetIOVerbose(mArgsInfo.verbose_flag);
- if (mArgsInfo.input_given) {
- SetInputFilename(mArgsInfo.input_arg);
- }
- if (mArgsInfo.output_given) {
- SetOutputFilename(mArgsInfo.output_arg);
- }
+ if (mArgsInfo.output_given) {
+ SetOutputFilename(mArgsInfo.output_arg);
}
- //--------------------------------------------------------------------
-
-
- //--------------------------------------------------------------------
- // Update with the number of dimensions and the pixeltype
- //--------------------------------------------------------------------
- template<class args_info_type>
- template<class InputImageType>
- void
- ResampleImageGenericFilter<args_info_type>::UpdateWithInputImageType() {
-
- // Reading input
- typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
-
- // Main filter
- typedef typename InputImageType::PixelType PixelType;
- typedef InputImageType OutputImageType; // to change to float is user ask it (?)
-
- // Filter
- typedef clitk::ResampleImageWithOptionsFilter<InputImageType, OutputImageType> ResampleImageFilterType;
- typename ResampleImageFilterType::Pointer filter = ResampleImageFilterType::New();
- filter->SetInput(input);
-
- // Set Verbose
- filter->SetVerboseOptions(mArgsInfo.verbose_flag);
-
- // Set size / spacing
- static const unsigned int dim = OutputImageType::ImageDimension;
- typename OutputImageType::SpacingType spacing;
- typename OutputImageType::SizeType size;
- if (mArgsInfo.spacing_given == 1) {
- filter->SetOutputIsoSpacing(mArgsInfo.spacing_arg[0]);
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//--------------------------------------------------------------------
+template<class args_info_type>
+template<class InputImageType>
+void
+ResampleImageGenericFilter<args_info_type>::UpdateWithInputImageType()
+{
+
+ // Reading input
+ typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
+
+ // Main filter
+ typedef typename InputImageType::PixelType PixelType;
+ typedef InputImageType OutputImageType; // to change to float is user ask it (?)
+
+ // Filter
+ typedef clitk::ResampleImageWithOptionsFilter<InputImageType, OutputImageType> ResampleImageFilterType;
+ typename ResampleImageFilterType::Pointer filter = ResampleImageFilterType::New();
+ filter->SetInput(input);
+
+ // Set Verbose
+ filter->SetVerboseOptions(mArgsInfo.verbose_flag);
+
+ // Set size / spacing
+ static const unsigned int dim = OutputImageType::ImageDimension;
+ typename OutputImageType::SpacingType spacing;
+ typename OutputImageType::SizeType size;
+ if (mArgsInfo.spacing_given == 1) {
+ filter->SetOutputIsoSpacing(mArgsInfo.spacing_arg[0]);
+ } else {
+ if ((mArgsInfo.spacing_given != 0) && (mArgsInfo.size_given != 0)) {
+ std::cerr << "Error: use spacing or size, not both." << std::endl;
+ exit(0);
}
- else {
- if ((mArgsInfo.spacing_given != 0) && (mArgsInfo.size_given != 0)) {
- std::cerr << "Error: use spacing or size, not both." << std::endl;
- exit(0);
- }
- if (!((mArgsInfo.spacing_given == 0) && (mArgsInfo.size_given == 0))) {
-
- if ((mArgsInfo.spacing_given != 0) && (mArgsInfo.spacing_given != dim)) {
- std::cerr << "Error: spacing should have one or " << dim << " values." << std::endl;
- exit(0);
- }
- if ((mArgsInfo.size_given != 0) && (mArgsInfo.size_given != dim)) {
- std::cerr << "Error: size should have " << dim << " values." << std::endl;
- exit(0);
- }
- if (mArgsInfo.spacing_given)
- for(unsigned int i=0; i<dim; i++)
- spacing[i] = mArgsInfo.spacing_arg[i];
- if (mArgsInfo.size_given)
- for(unsigned int i=0; i<dim; i++)
- size[i] = mArgsInfo.size_arg[i];
- filter->SetOutputSpacing(spacing);
- filter->SetOutputSize(size);
+ if (!((mArgsInfo.spacing_given == 0) && (mArgsInfo.size_given == 0))) {
+
+ if ((mArgsInfo.spacing_given != 0) && (mArgsInfo.spacing_given != dim)) {
+ std::cerr << "Error: spacing should have one or " << dim << " values." << std::endl;
+ exit(0);
}
- }
-
- // Set temporal dimension
- filter->SetLastDimensionIsTime(mArgsInfo.time_flag);
-
- // Set Gauss
- filter->SetGaussianFilteringEnabled(mArgsInfo.autogauss_flag);
- if (mArgsInfo.gauss_given != 0) {
- typename ResampleImageFilterType::GaussianSigmaType g;
- for(unsigned int i=0; i<dim; i++) {
- g[i] = mArgsInfo.gauss_arg[i];
+ if ((mArgsInfo.size_given != 0) && (mArgsInfo.size_given != dim)) {
+ std::cerr << "Error: size should have " << dim << " values." << std::endl;
+ exit(0);
}
- filter->SetGaussianSigma(g);
+ if (mArgsInfo.spacing_given)
+ for(unsigned int i=0; i<dim; i++)
+ spacing[i] = mArgsInfo.spacing_arg[i];
+ if (mArgsInfo.size_given)
+ for(unsigned int i=0; i<dim; i++)
+ size[i] = mArgsInfo.size_arg[i];
+ filter->SetOutputSpacing(spacing);
+ filter->SetOutputSize(size);
}
-
- // Set Interpolation
- std::string interp = std::string(mArgsInfo.interp_arg);
- if (interp == "nn") {
- filter->SetInterpolationType(ResampleImageFilterType::NearestNeighbor);
+ }
+
+ // Set temporal dimension
+ filter->SetLastDimensionIsTime(mArgsInfo.time_flag);
+
+ // Set Gauss
+ filter->SetGaussianFilteringEnabled(mArgsInfo.autogauss_flag);
+ if (mArgsInfo.gauss_given != 0) {
+ typename ResampleImageFilterType::GaussianSigmaType g;
+ for(unsigned int i=0; i<dim; i++) {
+ g[i] = mArgsInfo.gauss_arg[i];
}
- else {
- if (interp == "linear") {
- filter->SetInterpolationType(ResampleImageFilterType::Linear);
- }
- else {
- if (interp == "bspline") {
- filter->SetInterpolationType(ResampleImageFilterType::BSpline);
- }
- else {
- if (interp == "blut") {
- filter->SetInterpolationType(ResampleImageFilterType::B_LUT);
- }
- else {
- std::cerr << "Error. I do not know interpolation '" << mArgsInfo.interp_arg
- << "'. Choose among: nn, linear, bspline, blut" << std::endl;
- exit(0);
- }
+ filter->SetGaussianSigma(g);
+ }
+
+ // Set Interpolation
+ std::string interp = std::string(mArgsInfo.interp_arg);
+ if (interp == "nn") {
+ filter->SetInterpolationType(ResampleImageFilterType::NearestNeighbor);
+ } else {
+ if (interp == "linear") {
+ filter->SetInterpolationType(ResampleImageFilterType::Linear);
+ } else {
+ if (interp == "bspline") {
+ filter->SetInterpolationType(ResampleImageFilterType::BSpline);
+ } else {
+ if (interp == "blut") {
+ filter->SetInterpolationType(ResampleImageFilterType::B_LUT);
+ } else {
+ std::cerr << "Error. I do not know interpolation '" << mArgsInfo.interp_arg
+ << "'. Choose among: nn, linear, bspline, blut" << std::endl;
+ exit(0);
}
}
}
-
- // Set default pixel value
- filter->SetDefaultPixelValue(mArgsInfo.default_arg);
+ }
- // Set thread
- if (mArgsInfo.thread_given) {
- filter->SetNumberOfThreads(mArgsInfo.thread_arg);
- }
+ // Set default pixel value
+ filter->SetDefaultPixelValue(mArgsInfo.default_arg);
- // Go !
- filter->Update();
- typename OutputImageType::Pointer outputImage = filter->GetOutput();
- this->template SetNextOutput<OutputImageType>(outputImage);
+ // Set thread
+ if (mArgsInfo.thread_given) {
+ filter->SetNumberOfThreads(mArgsInfo.thread_arg);
}
- //--------------------------------------------------------------------
+
+ // Go !
+ filter->Update();
+ typename OutputImageType::Pointer outputImage = filter->GetOutput();
+ this->template SetNextOutput<OutputImageType>(outputImage);
+}
+//--------------------------------------------------------------------
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff