%module gdcm
+#pragma SWIG nowarn=504,510
%{
+#include <iostream>
+
#include "gdcmCommon.h"
-#include "gdcmDictEntry.h"
+#include "gdcmBase.h"
+#include "gdcmRefCounter.h"
+#include "gdcmCommand.h"
+#include "gdcmCommandPy.h"
+#include "gdcmDebug.h"
+#include "gdcmCommandManager.h"
+#include "gdcmTagKey.h"
+#include "gdcmVRKey.h"
#include "gdcmDict.h"
+#include "gdcmDictEntry.h"
#include "gdcmDictSet.h"
-#include "gdcmParser.h"
-#include "gdcmHeaderEntry.h"
-#include "gdcmHeader.h"
-#include "gdcmHeaderHelper.h"
-#include "gdcmFile.h"
-#include "gdcmUtil.h"
-#include "gdcmObject.h"
#include "gdcmDicomDir.h"
#include "gdcmDicomDirElement.h"
-#include "gdcmMeta.h"
-#include "gdcmPatient.h"
-#include "gdcmStudy.h"
-#include "gdcmSerie.h"
-#include "gdcmImage.h"
-
-using namespace std;
-
-// Utility functions on strings for removing leading and trailing spaces
-void EatLeadingAndTrailingSpaces(string & s) {
- while ( s.length() && (s[0] == ' ') )
- s.erase(0,1);
- while ( s.length() && (s[s.length()-1] == ' ') )
- s.erase(s.length()-1, 1);
-}
-
-void vtkPythonVoidFunc(void *arg)
-{
- PyObject *arglist, *result;
- PyObject *func = (PyObject *)arg;
-
- arglist = Py_BuildValue("()");
-
- result = PyEval_CallObject(func, arglist);
- Py_DECREF(arglist);
-
- if (result)
- {
- Py_XDECREF(result);
- }
- else
- {
- if (PyErr_ExceptionMatches(PyExc_KeyboardInterrupt))
- {
- cerr << "Caught a Ctrl-C within python, exiting program.\n";
- Py_Exit(1);
- }
- PyErr_Print();
- }
-}
-
-void vtkPythonVoidFuncArgDelete(void *arg)
-{
- PyObject *func = (PyObject *)arg;
- if (func)
- {
- Py_DECREF(func);
- }
-}
-
+#include "gdcmDicomDirImage.h"
+#include "gdcmDicomDirMeta.h"
+#include "gdcmDicomDirObject.h"
+#include "gdcmDicomDirPatient.h"
+#include "gdcmDicomDirStudy.h"
+#include "gdcmDicomDirSerie.h"
+#include "gdcmDicomDirVisit.h"
+#include "gdcmDicomDirPrivate.h"
+#include "gdcmDirList.h"
+#include "gdcmDocEntrySet.h"
+#include "gdcmDocument.h"
+#include "gdcmElementSet.h"
+#include "gdcmFileHelper.h"
+#include "gdcmGlobal.h"
+#include "gdcmFile.h"
+#include "gdcmSerieHelper.h"
+#include "gdcmRLEFramesInfo.h"
+#include "gdcmJPEGFragmentsInfo.h"
+#include "gdcmSQItem.h"
+#include "gdcmUtil.h"
+#include "gdcmDocEntry.h"
+#include "gdcmDataEntry.h"
+#include "gdcmSeqEntry.h"
+#include "gdcmVR.h"
+#include "gdcmTS.h"
+#include "gdcmDictGroupName.h"
+
+/// This is required in order to avoid %including all the gdcm include files.
+using namespace GDCM_NAME_SPACE;
%}
-typedef unsigned short guint16;
-typedef unsigned int guint32;
-////////////////////////////////////////////////////////////////////////////
-// Global variables get exported to cvar in Python
-%immutable;
-extern gdcmGlobal gdcmGlob;
-%mutable;
-////////////////////////////////////////////////////////////////////////////
-%typemap(out) std::list<std::string> * {
- PyObject* NewItem = (PyObject*)0;
- PyObject* NewList = PyList_New(0); // The result of this typemap
- for (list<string>::iterator NewString = ($1)->begin();
- NewString != ($1)->end(); ++NewString) {
- NewItem = PyString_FromString(NewString->c_str());
- PyList_Append( NewList, NewItem);
- }
- $result = NewList;
-}
+/////////////////////// typemap section ////////////////////////////////////
-////////////////////////////////////////////////////////////////////////////
-// Convert a c++ hash table in a python native dictionary
-%typemap(out) std::map<std::string, std::list<std::string> > * {
- PyObject* NewDict = PyDict_New(); // The result of this typemap
- PyObject* NewKey = (PyObject*)0;
- PyObject* NewVal = (PyObject*)0;
-
- for (map<string, list<string> >::iterator tag = ($1)->begin();
- tag != ($1)->end(); ++tag) {
- string first = tag->first;
- // Do not publish entries whose keys is made of spaces
- if (first.length() == 0)
- continue;
- NewKey = PyString_FromString(first.c_str());
- PyObject* NewList = PyList_New(0);
- for (list<string>::iterator Item = tag->second.begin();
- Item != tag->second.end(); ++Item) {
- NewVal = PyString_FromString(Item->c_str());
- PyList_Append( NewList, NewVal);
- }
- PyDict_SetItem( NewDict, NewKey, NewList);
- }
- $result = NewDict;
-}
+////////////////////////////////////////////////
+// Redefine all types used
+typedef char int8_t;
+typedef unsigned char uint8_t;
+typedef short int16_t;
+typedef unsigned short uint16_t;
+typedef int int32_t;
+typedef unsigned int uint32_t;
+typedef long long int64_t;
+typedef unsigned long long uint64_t;
-////////////////////////////////////////////////////////////////////////////
-// Convert a c++ hash table in a python native dictionary
-%typemap(out) TagHeaderEntryHT & {
- PyObject* NewDict = PyDict_New(); // The result of this typemap
- string RawName; // Element name as gotten from gdcm
- PyObject* NewKey = (PyObject*)0; // Associated name as python object
- string RawValue; // Element value as gotten from gdcm
- PyObject* NewVal = (PyObject*)0; // Associated value as python object
-
- for (TagHeaderEntryHT::iterator tag = $1->begin(); tag != $1->end(); ++tag) {
-
- // The element name shall be the key:
- RawName = tag->second->GetName();
- // gdcm unrecognized (including not loaded because their size exceeds
- // the user specified treshold) elements are exported with their
- // TagKey as key.
- if (RawName == "Unknown")
- RawName = tag->second->GetKey();
- NewKey = PyString_FromString(RawName.c_str());
-
- // Element values are striped from leading/trailing spaces
- RawValue = tag->second->GetValue();
- EatLeadingAndTrailingSpaces(RawValue);
- NewVal = PyString_FromString(RawValue.c_str());
-
- PyDict_SetItem( NewDict, NewKey, NewVal);
- }
- $result = NewDict;
+////////////////////////////////////////////////
+// Convert a DocEntry * to the real derived class
+%typemap(out) GDCM_NAME_SPACE::DocEntry *
+{
+ PyObject *newEntry;
+
+ if($1)
+ {
+ if(dynamic_cast<SeqEntry *>($1)) // SeqEntry *
+ newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_GDCM_NAME_SPACE__SeqEntry,0);
+ else if(dynamic_cast<DataEntry *>($1)) // DataEntry *
+ newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_GDCM_NAME_SPACE__DataEntry,0);
+ else
+ newEntry = NULL;
+ }
+ else
+ {
+ newEntry = Py_BuildValue("");
+ }
+ $result = newEntry;
}
-%typemap(out) TagHeaderEntryHT {
- PyObject* NewDict = PyDict_New(); // The result of this typemap
- string RawName; // Element name as gotten from gdcm
- PyObject* NewKey = (PyObject*)0; // Associated name as python object
- string RawValue; // Element value as gotten from gdcm
- PyObject* NewVal = (PyObject*)0; // Associated value as python object
-
- for (TagHeaderEntryHT::iterator tag = $1.begin(); tag != $1.end(); ++tag) {
-
- // The element name shall be the key:
- RawName = tag->second->GetName();
- // gdcm unrecognized (including not loaded because their size exceeds
- // the user specified treshold) elements are exported with their
- // TagKey as key.
- if (RawName == "Unknown")
- RawName = tag->second->GetKey();
- NewKey = PyString_FromString(RawName.c_str());
-
- // Element values are striped from leading/trailing spaces
- RawValue = tag->second->GetValue();
- EatLeadingAndTrailingSpaces(RawValue);
- NewVal = PyString_FromString(RawValue.c_str());
-
- PyDict_SetItem( NewDict, NewKey, NewVal);
- }
- $result = NewDict;
+//////////////////// STL string versus Python str ////////////////////////
+// Convertion returning a C++ string.
+%typemap(out) std::string
+{
+ $result = PyString_FromString(($1).c_str());
}
-////////////////////////////////////////////////////////////////////////////
-%typemap(out) ListPatient & {
- PyObject* NewItem = (PyObject*)0;
- $result = PyList_New(0); // The result of this typemap
-
- for (list<gdcmPatient *>::iterator New = ($1)->begin();
- New != ($1)->end(); ++New) {
- NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmPatient,1);
- PyList_Append($result, NewItem);
- }
+%typemap(out) string
+{
+ $result = PyString_FromString(($1).c_str());
}
-%typemap(out) ListStudy & {
- PyObject* NewItem = (PyObject*)0;
- $result = PyList_New(0); // The result of this typemap
-
- for (list<gdcmStudy *>::iterator New = ($1)->begin();
- New != ($1)->end(); ++New) {
- NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmStudy,1);
- PyList_Append($result, NewItem);
- }
+%typemap(out) std::string const &
+{
+ $result = PyString_FromString(($1)->c_str());
}
-%typemap(out) ListSerie & {
- PyObject* NewItem = (PyObject*)0;
- $result = PyList_New(0); // The result of this typemap
-
- for (list<gdcmSerie *>::iterator New = ($1)->begin();
- New != ($1)->end(); ++New) {
- NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmSerie,1);
- PyList_Append($result, NewItem);
- }
+// Convertion of incoming Python str to STL string
+%typemap(python, in) const std::string, std::string
+{
+ $1 = PyString_AsString($input);
}
-%typemap(out) ListImage & {
- PyObject* NewItem = (PyObject*)0;
- $result = PyList_New(0); // The result of this typemap
-
- for (list<gdcmImage *>::iterator New = ($1)->begin();
- New != ($1)->end(); ++New) {
- NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmImage,1);
- PyList_Append($result, NewItem);
- }
+// Same convertion as above but references (since swig converts C++
+// references to pointers)
+%typemap(python, in) std::string const &
+{
+ $1 = new std::string( PyString_AsString( $input ) );
}
-////////////////////////////////////////////////////////////////////////////
-// Deals with function returning a C++ string.
-%typemap(python, in) (gdcmMethod *method,void *arg) {
- Py_INCREF($input);
- $1=vtkPythonVoidFunc;
- $2=$input;
+//////////////////// gdcm.TagName versus Python str //////////////////////
+%typemap(out) GDCM_NAME_SPACE::TagName, const GDCM_NAME_SPACE::TagName &
+{
+ $result = PyString_FromString(($1)->c_str());
}
-
-////////////////////////////////////////////////////////////////////////////
-// Deals with function returning a C++ string.
-%typemap(out) string, std::string {
- $result = PyString_FromString(($1).c_str());
+// Convertion of incoming Python str to STL string
+%typemap(python, in) const GDCM_NAME_SPACE::TagName, GDCM_NAME_SPACE::TagName
+{
+ $1 = PyString_AsString($input);
}
-%typemap(python, in) const std::string, std::string
+// Same convertion as above but references (since swig converts C++
+// refererences to pointers)
+%typemap(python, in) GDCM_NAME_SPACE::TagName const &
{
- $1 = PyString_AsString($input);
+ $1 = new std::string( PyString_AsString( $input ) );
}
////////////////////////////////////////////////////////////////////////////
+// Because overloading and %rename don't work together (see below Note 1)
+// we need to ignore some methods (e.g. the overloaded default constructor).
+// The GDCM_NAME_SPACE::File class doesn't have any SetFilename method anyhow, and
+// this constructor is only used internaly (not from the API) so this is
+// not a big loss.
+%ignore GDCM_NAME_SPACE::binary_write(std::ostream &,uint32_t const &);
+%ignore GDCM_NAME_SPACE::binary_write(std::ostream &,uint16_t const &);
+
+%ignore GDCM_NAME_SPACE::VRKey::operator=(const VRKey &_val);
+%ignore GDCM_NAME_SPACE::VRKey::operator=(const std::string &_val);
+%ignore GDCM_NAME_SPACE::VRKey::operator=(const char *_val);
+%ignore GDCM_NAME_SPACE::VRKey::operator[](const unsigned int &_id) const;
+%ignore GDCM_NAME_SPACE::VRKey::operator[](const unsigned int &_id);
+
+%ignore GDCM_NAME_SPACE::TagKey::operator=(const TagKey &_val);
+%ignore GDCM_NAME_SPACE::TagKey::operator[](const unsigned int &_id) const;
+%ignore GDCM_NAME_SPACE::TagKey::operator[](const unsigned int &_id);
+
+// Ignore all placed in gdcmCommon.h
+%ignore GDCM_UNKNOWN;
+%ignore GDCM_UNFOUND;
+%ignore GDCM_BINLOADED;
+%ignore GDCM_NOTLOADED;
+%ignore GDCM_UNREAD;
+%ignore GDCM_NOTASCII;
+%ignore GDCM_PIXELDATA;
+%ignore GDCM_LEGACY;
+%ignore GDCM_VRUNKNOWN;
+%ignore GDCM_FILESEPARATOR;
+
+%constant const char *UNKNOWN = "GDCM::Unknown";
+%constant const char *UNFOUND = "GDCM::Unfound";
+%constant const char *BINLOADED = "GDCM::Binary data";
+%constant const char *NOTLOADED = "GDCM::NotLoaded";
+%constant const char *UNREAD = "GDCM::UnRead";
+%constant const char *GDCM_NOTASCII = "GDCM::NotAscii";
+%constant const char *GDCM_PIXELDATA = "GDCM::Pixel Data to be loaded";
+%constant const char *VRUNKNOWN = " ";
+%constant const char GDCM_FILESEPARATOR = '\\';
+////////////////////////////////////////////////////////////////////////////
+// Warning: Order matters !
%include "gdcmCommon.h"
+%include "gdcmBase.h"
+%include "gdcmRefCounter.h"
+%include "gdcmCommand.h"
+%include "gdcmCommandPy.h"
+%include "gdcmDebug.h"
+%include "gdcmCommandManager.h"
+%include "gdcmTagKey.h"
+%include "gdcmVRKey.h"
%include "gdcmDictEntry.h"
%include "gdcmDict.h"
%include "gdcmDictSet.h"
-%include "gdcmParser.h"
-%include "gdcmHeaderEntry.h"
-%include "gdcmHeader.h"
-%include "gdcmHeaderHelper.h"
+%include "gdcmDocEntrySet.h"
+%include "gdcmElementSet.h"
+%include "gdcmSQItem.h"
+%include "gdcmDicomDirElement.h"
+%include "gdcmDicomDirObject.h"
+%include "gdcmDicomDirImage.h"
+%include "gdcmDicomDirPrivate.h"
+%include "gdcmDicomDirSerie.h"
+%include "gdcmDicomDirVisit.h"
+%include "gdcmDicomDirStudy.h"
+%include "gdcmDicomDirPatient.h"
+%include "gdcmDicomDirMeta.h"
+%include "gdcmDocument.h"
%include "gdcmFile.h"
+%include "gdcmSerieHelper.h"
+%include "gdcmFileHelper.h"
%include "gdcmUtil.h"
-%include "gdcmObject.h"
+%include "gdcmGlobal.h"
%include "gdcmDicomDir.h"
-%include "gdcmDicomDirElement.h"
-%include "gdcmMeta.h"
-%include "gdcmPatient.h"
-%include "gdcmStudy.h"
-%include "gdcmSerie.h"
-%include "gdcmImage.h"
+%include "gdcmDocEntry.h"
+%include "gdcmDataEntry.h"
+%include "gdcmSeqEntry.h"
+%include "gdcmVR.h"
+%include "gdcmTS.h"
+%include "gdcmDictGroupName.h"
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff