comment binarizeimage because already exist in tools

[clitk.git] / itk / clitkAutoCropFilter.txx

diff --git a/itk/clitkAutoCropFilter.txx b/itk/clitkAutoCropFilter.txx
index 164bb22e42e41179332c6d15c3494bec89a00962..cc2c137abdf7e2c8bf04bf1ba5a5fc3979909fcb 100644 (file)
--- a/itk/clitkAutoCropFilter.txx
+++ b/itk/clitkAutoCropFilter.txx
@@ -29,6 +29,7 @@
 #include "itkLabelImageToLabelMapFilter.h"
 #include "itkLabelMapToLabelImageFilter.h"
 #include "itkRegionOfInterestImageFilter.h"
+#include "itkExtractImageFilter.h"
 
 namespace clitk {
 
@@ -94,7 +95,8 @@ namespace clitk {
     typedef itk::AutoCropLabelMapFilter<LabelMapType> AutoCropFilterType;
     typename AutoCropFilterType::Pointer autoCropFilter = AutoCropFilterType::New();
     autoCropFilter->SetInput(imageToLabelFilter->GetOutput());
-
+    autoCropFilter->ReleaseDataFlagOff(); 
+    
     // Convert to LabelImage
     typedef itk::LabelMapToLabelImageFilter<LabelMapType, ImageType> MapToImageFilterType;
     typename MapToImageFilterType::Pointer labelToImageFilter = MapToImageFilterType::New();       
@@ -106,6 +108,12 @@ namespace clitk {
 
     // Update the output size
     m_Region = m_labeImage->GetLargestPossibleRegion();
+    // Sometimes the index is 9223372036854775807 ???
+    if (m_Region.GetIndex()[0] > 99999) {
+      typename ImageType::IndexType index; 
+      index.Fill(0);
+      m_Region.SetIndex(index);
+    }
     output->SetLargestPossibleRegion(m_Region);
     output->SetRequestedRegion(m_Region);
     output->SetBufferedRegion(m_Region);
@@ -118,16 +126,23 @@ namespace clitk {
   void 
   AutoCropFilter<ImageType>::
   GenerateData() {
-    DD("AutoCropFilter::GenerateData");
     // Get input pointers
     ImageConstPointer input = dynamic_cast<const ImageType*>(itk::ProcessObject::GetInput(0));
   
     // Extract the region
-    typedef itk::RegionOfInterestImageFilter<ImageType, ImageType> CropFilterType;
+
+    //TO CHANGE WITH EXTRACTIMAGEFILTER ! 
+
+    //    typedef itk::RegionOfInterestImageFilter<ImageType, ImageType> CropFilterType;
+    typedef itk::ExtractImageFilter<ImageType, ImageType> CropFilterType;
     m_labeImage->SetRequestedRegion(m_labeImage->GetLargestPossibleRegion());
     typename CropFilterType::Pointer cropFilter = CropFilterType::New();
     cropFilter->SetInput(m_labeImage);
-    cropFilter->SetRegionOfInterest(m_Region);
+
+    // cropFilter->SetRegionOfInterest(m_Region);
+    cropFilter->SetExtractionRegion(m_Region);
+
+    cropFilter->ReleaseDataFlagOff();
 
     // Go ! 
     cropFilter->Update();