Add one slice for the S1RL support

[clitk.git] / itk / clitkCropLikeImageFilter.txx

diff --git a/itk/clitkCropLikeImageFilter.txx b/itk/clitkCropLikeImageFilter.txx
index c92591256a6054414a249c46bb7743384f25227a..73dd7a7d1532f0f885d1a35f71296145b9691f9f 100644 (file)
--- a/itk/clitkCropLikeImageFilter.txx
+++ b/itk/clitkCropLikeImageFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,16 +14,17 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #ifndef CLITKCROPLIKEIMAGEFILTER_TXX
 #define CLITKCROPLIKEIMAGEFILTER_TXX
 
 // clitk
 #include "clitkCommon.h"
+#include "clitkPasteImageFilter.h"
 
 // itk
-#include "itkPasteImageFilter.h"
+//#include "itkPasteImageFilter.h"
 
 //--------------------------------------------------------------------
 template <class ImageType>
@@ -136,6 +137,16 @@ GenerateOutputInformation() {
                           << ") of 'like' is " << likeSpacing[i] << ".");
     }
   }
+
+  // Check that we must crop along each dimension. If not, we use the
+  // size of the input image
+  for(unsigned int i=0; i<ImageType::ImageDimension; i++) {
+    if (m_CropAlongThisDimension[i] == false) {
+      likeStart[i] = input->GetLargestPossibleRegion().GetIndex()[i];
+      likeSize[i] = input->GetLargestPossibleRegion().GetSize()[i];
+    }
+  }
+
   // Define output region 
   m_OutputRegion.SetIndex(likeStart);
   m_OutputRegion.SetSize(likeSize);
@@ -218,7 +229,7 @@ GenerateData() {
   output->FillBuffer(GetBackgroundValue());
   
   // Paste image inside
-  typedef itk::PasteImageFilter<ImageType,ImageType> PasteFilterType;
+  typedef clitk::PasteImageFilter<ImageType,ImageType> PasteFilterType;
   typename PasteFilterType::Pointer pasteFilter = PasteFilterType::New();
   //pasteFilter->ReleaseDataFlagOn(); // change nothing ?
   //  pasteFilter->InPlaceOn(); // makt it seg fault