// itk
#include <itkBoundingBox.h>
#include <itkJoinSeriesImageFilter.h>
+#include <itkChangeInformationImageFilter.h>
/*
According to
namespace clitk {
//--------------------------------------------------------------------
- template<class ImageType>
- void ComputeBBFromImageRegion(const ImageType * image,
- typename ImageType::RegionType region,
- typename itk::BoundingBox<unsigned long,
- ImageType::ImageDimension>::Pointer bb);
-
- //--------------------------------------------------------------------
- template<int Dimension>
- void ComputeBBIntersection(typename itk::BoundingBox<unsigned long, Dimension>::Pointer bbo,
- typename itk::BoundingBox<unsigned long, Dimension>::Pointer bbi1,
- typename itk::BoundingBox<unsigned long, Dimension>::Pointer bbi2);
-
- //--------------------------------------------------------------------
- template<class ImageType>
- void ComputeRegionFromBB(const ImageType * image,
- const typename itk::BoundingBox<unsigned long,
- ImageType::ImageDimension>::Pointer bb,
- typename ImageType::RegionType & region);
- //--------------------------------------------------------------------
template<class TInternalImageType, class TMaskInternalImageType>
typename TInternalImageType::Pointer
SetBackground(const TInternalImageType * input,
template<class ImageType>
typename ImageType::Pointer
AutoCrop(const ImageType * input,
- typename ImageType::PixelType BG) {
+ typename ImageType::PixelType BG,
+ const bool useBorderFlag=false) {
typedef clitk::AutoCropFilter<ImageType> AutoCropFilterType;
typename AutoCropFilterType::Pointer autoCropFilter = AutoCropFilterType::New();
autoCropFilter->SetInput(input);
autoCropFilter->SetBackgroundValue(BG);
+ autoCropFilter->SetUseBorder(useBorderFlag);
autoCropFilter->Update();
return autoCropFilter->GetOutput();
}
int minimalComponentSize,
LabelizeParameters<typename TImageType::PixelType> * param);
- //--------------------------------------------------------------------
- template<class ImageType>
- typename ImageType::Pointer
- ResizeImageLike(const ImageType * input,
- const itk::ImageBase<ImageType::ImageDimension> * like,
- typename ImageType::PixelType BG);
-
//--------------------------------------------------------------------
template<class MaskImageType>
double spacing=-1,
bool autocropflag=true,
bool singleObjectCCL=true);
+ template<class MaskImageType>
+ typename MaskImageType::Pointer
+ SliceBySliceRelativePosition(const MaskImageType * input,
+ const MaskImageType * object,
+ int direction,
+ double threshold,
+ double angle,
+ bool inverseflag,
+ bool uniqueConnectedComponent=false,
+ double spacing=-1,
+ bool autocropflag=true,
+ bool singleObjectCCL=true);
//--------------------------------------------------------------------
// In a binary image, search for the point belonging to the FG that
typename ImageType::Pointer
JoinSlices(std::vector<typename itk::Image<typename ImageType::PixelType,
ImageType::ImageDimension-1>::Pointer > & slices,
- const ImageType * input,
+ const itk::ImageBase<ImageType::ImageDimension> * input, //const ImageType * input,
int direction) {
typedef typename itk::Image<typename ImageType::PixelType, ImageType::ImageDimension-1> SliceType;
typedef itk::JoinSeriesImageFilter<SliceType, ImageType> JoinSeriesFilterType;
std::vector<typename ImageType::PointType> & lB,
typename ImageType::PixelType BG,
int mainDirection,
- double offsetToKeep);
+ double offsetToKeep,
+ bool keepIfEqual=false);
+ template<class ImageType>
+ void
+ SliceBySliceSetBackgroundFromLineSeparation_pt(ImageType * input,
+ std::vector<typename ImageType::PointType> & lA,
+ std::vector<typename ImageType::PointType> & lB,
+ typename ImageType::PixelType BG,
+ typename ImageType::PointType offsetToKeep,
+ bool keepIfEqual=false);
//--------------------------------------------------------------------
void And(ImageType * input,
const ImageType * object,
typename ImageType::PixelType BG=0);
+ template<class ImageType>
+ void Or(ImageType * input,
+ const ImageType * object,
+ typename ImageType::PixelType BG=0);
//--------------------------------------------------------------------
double margin,
std::vector<typename ImageType::PointType> & A,
std::vector<typename ImageType::PointType> & B);
+ template<class ImageType>
+ void
+ SliceBySliceBuildLineSegmentAccordingToMinimalDistanceBetweenStructures(const ImageType * S1,
+ const ImageType * S2,
+ typename ImageType::PixelType BG,
+ int sliceDimension,
+ std::vector<typename ImageType::PointType> & A,
+ std::vector<typename ImageType::PointType> & B);
//--------------------------------------------------------------------
int dim1, int dim2, bool removeLowerPartFlag);
//--------------------------------------------------------------------
-
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ typename ImageType::Pointer
+ SliceBySliceSetBackgroundFromPoints(const ImageType * input,
+ typename ImageType::PixelType BG,
+ int sliceDim,
+ std::vector<typename ImageType::PointType> & A,
+ bool removeGreaterThanXFlag,
+ bool removeGreaterThanYFlag);
+ //--------------------------------------------------------------------
+
+
//--------------------------------------------------------------------
template<class ImageType>
void
- FillRegionWithValue(ImageType * input, typename ImageType::PixelType value, typename ImageType::RegionType & region);
+ FillRegionWithValue(ImageType * input, typename ImageType::PixelType value,
+ typename ImageType::RegionType & region);
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ void
+ GetMinMaxBoundary(ImageType * input, typename ImageType::PointType & min,
+ typename ImageType::PointType & max);
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ typename itk::Image<float, ImageType::ImageDimension>::Pointer//void
+ DistanceMap(const ImageType * input, typename ImageType::PixelType BG);//,
+ //--------------------------------------------------------------------
+
+
//--------------------------------------------------------------------
+ template<class ImageType>
+ typename ImageType::PointType
+ ComputeClosestPoint(const ImageType * input,
+ const itk::Image<float, ImageType::ImageDimension> * dmap,
+ typename ImageType::PixelType & BG);
+ //--------------------------------------------------------------------
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ typename ImageType::Pointer
+ RemoveNegativeIndexFromRegion(ImageType * input);
+ //--------------------------------------------------------------------
+
-}
+} // end clitk namespace
#include "clitkSegmentationUtils.txx"