#include "clitkCommon.h"
#include "clitkAutoCropFilter.h"
#include "clitkLabelizeParameters.h"
+#include "clitkExtractSliceFilter.h"
// itk
#include <itkBoundingBox.h>
//--------------------------------------------------------------------
template<class ImageType>
void
- ExtractSlices(const ImageType * image, int dim,
- std::vector< typename itk::Image<typename ImageType::PixelType,
- ImageType::ImageDimension-1>::Pointer > & slices);
+ ExtractSlices(const ImageType * image, int direction,
+ std::vector<typename itk::Image<typename ImageType::PixelType,
+ ImageType::ImageDimension-1>::Pointer > & slices)
+ {
+ typedef ExtractSliceFilter<ImageType> ExtractSliceFilterType;
+ typedef typename ExtractSliceFilterType::SliceType SliceType;
+ typename ExtractSliceFilterType::Pointer
+ extractSliceFilter = ExtractSliceFilterType::New();
+ extractSliceFilter->SetInput(image);
+ extractSliceFilter->SetDirection(direction);
+ extractSliceFilter->Update();
+ extractSliceFilter->GetOutputSlices(slices);
+ }
//--------------------------------------------------------------------
void AndNot(ImageType * input,
const ImageType * object,
typename ImageType::PixelType BG=0);
+ template<class ImageType>
+ void And(ImageType * input,
+ const ImageType * object,
+ typename ImageType::PixelType BG=0);
//--------------------------------------------------------------------
//--------------------------------------------------------------------
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ typename ImageType::Pointer
+ SliceBySliceSetBackgroundFromSingleLine(const ImageType * input,
+ typename ImageType::PixelType BG,
+ typename ImageType::PointType & A,
+ typename ImageType::PointType & B,
+ int dim1, int dim2, bool removeLowerPartFlag);
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ typename ImageType::Pointer
+ SliceBySliceSetBackgroundFromPoints(const ImageType * input,
+ typename ImageType::PixelType BG,
+ int sliceDim,
+ std::vector<typename ImageType::PointType> & A,
+ bool removeGreaterThanXFlag,
+ bool removeGreaterThanYFlag);
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ void
+ FillRegionWithValue(ImageType * input, typename ImageType::PixelType value,
+ typename ImageType::RegionType & region);
+ //--------------------------------------------------------------------
+
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ void
+ GetMinMaxBoundary(ImageType * input, typename ImageType::PointType & min,
+ typename ImageType::PointType & max);
+ //--------------------------------------------------------------------
+
}
#include "clitkSegmentationUtils.txx"