Use nan of std lib instead of sqrt(-1)

[clitk.git] / itk / clitkSliceBySliceRelativePositionFilter.h

diff --git a/itk/clitkSliceBySliceRelativePositionFilter.h b/itk/clitkSliceBySliceRelativePositionFilter.h
index e17a759b52fb810095fcc8ef3ee494c590e0ad82..35b3b8d88afefefa7edba6a1b96eeea29637ffc4 100644 (file)
--- a/itk/clitkSliceBySliceRelativePositionFilter.h
+++ b/itk/clitkSliceBySliceRelativePositionFilter.h
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #ifndef CLITKSLICEBYSLICERELATIVEPOSITIONFILTER_H
 #define CLITKSLICEBYSLICERELATIVEPOSITIONFILTER_H
@@ -73,53 +73,23 @@ namespace clitk {
     void PrintOptions();
     itkGetConstMacro(Direction, int);
     itkSetMacro(Direction, int);
-    // itkGetConstMacro(ObjectBackgroundValue, PixelType);
-    // itkSetMacro(ObjectBackgroundValue, PixelType);
-
-    // itkSetMacro(OrientationTypeString, std::string);
-    // itkGetConstMacro(OrientationTypeString, std::string);
-
-    // itkGetConstMacro(ResampleBeforeRelativePositionFilter, bool);
-    // itkSetMacro(ResampleBeforeRelativePositionFilter, bool);
-    // itkBooleanMacro(ResampleBeforeRelativePositionFilter);
-
-    // itkGetConstMacro(IntermediateSpacing, double);
-    // itkSetMacro(IntermediateSpacing, double);
-
-    // itkGetConstMacro(FuzzyThreshold, double);
-    // itkSetMacro(FuzzyThreshold, double);
 
     itkGetConstMacro(UniqueConnectedComponentBySlice, bool);
     itkSetMacro(UniqueConnectedComponentBySlice, bool);
     itkBooleanMacro(UniqueConnectedComponentBySlice);
 
-    // itkGetConstMacro(AutoCropFlag, bool);
-    // itkSetMacro(AutoCropFlag, bool);
-    // itkBooleanMacro(AutoCropFlag);
+    itkGetConstMacro(IgnoreEmptySliceObjectFlag, bool);
+    itkSetMacro(IgnoreEmptySliceObjectFlag, bool);
+    itkBooleanMacro(IgnoreEmptySliceObjectFlag);
 
-    // itkGetConstMacro(InverseOrientationFlag, bool);
-    // itkSetMacro(InverseOrientationFlag, bool);
-    // itkBooleanMacro(InverseOrientationFlag);
-
-    // itkGetConstMacro(RemoveObjectFlag, bool);
-    // itkSetMacro(RemoveObjectFlag, bool);
-    // itkBooleanMacro(RemoveObjectFlag);
-
-    // itkGetConstMacro(CombineWithOrFlag, bool);
-    // itkSetMacro(CombineWithOrFlag, bool);
-    // itkBooleanMacro(CombineWithOrFlag);
+    itkGetConstMacro(UseASingleObjectConnectedComponentBySliceFlag, bool);
+    itkSetMacro(UseASingleObjectConnectedComponentBySliceFlag, bool);
+    itkBooleanMacro(UseASingleObjectConnectedComponentBySliceFlag);
 
   protected:
     SliceBySliceRelativePositionFilter();
     virtual ~SliceBySliceRelativePositionFilter() {}
     
-    // PixelType m_ObjectBackgroundValue;
-    // OrientationTypeEnumeration m_OrientationType;
-    // std::string m_OrientationTypeString;
-    // double m_IntermediateSpacing;
-    // double m_FuzzyThreshold;
-    // bool m_ResampleBeforeRelativePositionFilter;
-
     virtual void GenerateOutputInformation();
     virtual void GenerateInputRequestedRegion();
     virtual void GenerateData();
@@ -130,10 +100,8 @@ namespace clitk {
     ImagePointer m_working_object;
     bool         m_UniqueConnectedComponentBySlice;
     int          m_Direction;
-    // bool m_InverseOrientationFlag;
-    // bool m_RemoveObjectFlag;
-    // bool m_AutoCropFlag;
-    // bool m_CombineWithOrFlag;
+    bool         m_IgnoreEmptySliceObjectFlag;
+    bool         m_UseASingleObjectConnectedComponentBySliceFlag;
 
   private:
     SliceBySliceRelativePositionFilter(const Self&); //purposely not implemented