Debug RTStruct conversion with empty struc

[clitk.git] / itk / clitkSliceBySliceRelativePositionFilter.h

diff --git a/itk/clitkSliceBySliceRelativePositionFilter.h b/itk/clitkSliceBySliceRelativePositionFilter.h
index bc8ae9725e5bd72342c24dcfca41a52fbae1f504..42633a929daf2286a92ff4741308eb5061d699df 100644 (file)
--- a/itk/clitkSliceBySliceRelativePositionFilter.h
+++ b/itk/clitkSliceBySliceRelativePositionFilter.h
@@ -33,13 +33,12 @@ namespace clitk {
   
   template <class ImageType>
   class ITK_EXPORT SliceBySliceRelativePositionFilter:
-    public clitk::FilterBase, 
-    public itk::ImageToImageFilter<ImageType, ImageType> 
+    public AddRelativePositionConstraintToLabelImageFilter<ImageType>
   {
 
   public:
     /** Standard class typedefs. */
-    typedef itk::ImageToImageFilter<ImageType, ImageType>   Superclass;
+    typedef AddRelativePositionConstraintToLabelImageFilter<ImageType>   Superclass;
     typedef SliceBySliceRelativePositionFilter              Self;
     typedef itk::SmartPointer<Self>                         Pointer;
     typedef itk::SmartPointer<const Self>                   ConstPointer;
@@ -54,6 +53,7 @@ namespace clitk {
     /** ImageDimension constants */
     itkStaticConstMacro(ImageDimension, unsigned int, ImageType::ImageDimension);
     typedef itk::Image<float, ImageDimension> FloatImageType;
+    typedef itk::Image<float, ImageDimension-1> FloatSliceType;
 
     /** Some convenient typedefs. */
     typedef typename ImageType::ConstPointer ImageConstPointer;
@@ -67,63 +67,62 @@ namespace clitk {
     typedef typename RelPosFilterType::OrientationTypeEnumeration OrientationTypeEnumeration;
     
     /** Input : initial image and object */
-    void SetInput(const ImageType * image);
+    virtual void SetInput(const ImageType * image) ITK_OVERRIDE;
     void SetInputObject(const ImageType * image);
-    
+
     // Options
+    void PrintOptions(std::ostream & os = std::cout);
     itkGetConstMacro(Direction, int);
     itkSetMacro(Direction, int);
-    itkGetConstMacro(ObjectBackgroundValue, PixelType);
-    itkSetMacro(ObjectBackgroundValue, PixelType);
-
-    itkSetMacro(OrientationTypeString, std::string);
-    itkGetConstMacro(OrientationTypeString, std::string);
-
-    itkGetConstMacro(ResampleBeforeRelativePositionFilter, bool);
-    itkSetMacro(ResampleBeforeRelativePositionFilter, bool);
-    itkBooleanMacro(ResampleBeforeRelativePositionFilter);
-
-    itkGetConstMacro(IntermediateSpacing, double);
-    itkSetMacro(IntermediateSpacing, double);
 
-    itkGetConstMacro(FuzzyThreshold, double);
-    itkSetMacro(FuzzyThreshold, double);
-
-    itkGetConstMacro(UniqueConnectedComponentBySlice, bool);
-    itkSetMacro(UniqueConnectedComponentBySlice, bool);
-    itkBooleanMacro(UniqueConnectedComponentBySlice);
-
-    itkGetConstMacro(AutoCropFlag, bool);
-    itkSetMacro(AutoCropFlag, bool);
-    itkBooleanMacro(AutoCropFlag);
-
-    itkGetConstMacro(NotFlag, bool);
-    itkSetMacro(NotFlag, bool);
-    itkBooleanMacro(NotFlag);
+    itkGetConstMacro(UniqueConnectedComponentBySliceFlag, bool);
+    itkSetMacro(UniqueConnectedComponentBySliceFlag, bool);
+    itkBooleanMacro(UniqueConnectedComponentBySliceFlag);
+
+    itkGetConstMacro(IgnoreEmptySliceObjectFlag, bool);
+    itkSetMacro(IgnoreEmptySliceObjectFlag, bool);
+    itkBooleanMacro(IgnoreEmptySliceObjectFlag);
+
+    itkGetConstMacro(UseTheLargestObjectCCLFlag, bool);
+    itkSetMacro(UseTheLargestObjectCCLFlag, bool);
+    itkBooleanMacro(UseTheLargestObjectCCLFlag);
+
+    itkGetConstMacro(ObjectCCLSelectionFlag, bool);
+    itkSetMacro(ObjectCCLSelectionFlag, bool);
+    itkBooleanMacro(ObjectCCLSelectionFlag);
+    itkGetConstMacro(ObjectCCLSelectionDimension, int);
+    itkSetMacro(ObjectCCLSelectionDimension, int);
+    itkGetConstMacro(ObjectCCLSelectionDirection, int);
+    itkSetMacro(ObjectCCLSelectionDirection, int);
+    itkGetConstMacro(ObjectCCLSelectionIgnoreSingleCCLFlag, bool);
+    itkSetMacro(ObjectCCLSelectionIgnoreSingleCCLFlag, bool);
+    itkBooleanMacro(ObjectCCLSelectionIgnoreSingleCCLFlag);
+
+    itkGetConstMacro(VerboseSlicesFlag, bool);
+    itkSetMacro(VerboseSlicesFlag, bool);
+    itkBooleanMacro(VerboseSlicesFlag);
 
   protected:
     SliceBySliceRelativePositionFilter();
     virtual ~SliceBySliceRelativePositionFilter() {}
     
-    int m_Direction;
-    PixelType m_ObjectBackgroundValue;
-    // OrientationTypeEnumeration m_OrientationType;
-    std::string m_OrientationTypeString;
-    double m_IntermediateSpacing;
-    double m_FuzzyThreshold;
-    bool m_ResampleBeforeRelativePositionFilter;
-
-    virtual void GenerateOutputInformation();
-    virtual void GenerateInputRequestedRegion();
-    virtual void GenerateData();
+    virtual void GenerateOutputInformation() ITK_OVERRIDE;
+    virtual void GenerateInputRequestedRegion() ITK_OVERRIDE;
+    virtual void GenerateData() ITK_OVERRIDE;
 
     ImagePointer input;
     ImagePointer object;
     ImagePointer m_working_input;
     ImagePointer m_working_object;
-    bool m_UniqueConnectedComponentBySlice;
-    bool m_NotFlag;
-    bool m_AutoCropFlag;
+    bool         m_UniqueConnectedComponentBySliceFlag;
+    int          m_Direction;
+    bool         m_IgnoreEmptySliceObjectFlag;
+    bool         m_UseTheLargestObjectCCLFlag;
+    bool         m_ObjectCCLSelectionFlag;
+    int          m_ObjectCCLSelectionDimension;
+    int          m_ObjectCCLSelectionDirection;
+    bool         m_ObjectCCLSelectionIgnoreSingleCCLFlag;
+    bool         m_VerboseSlicesFlag;
 
   private:
     SliceBySliceRelativePositionFilter(const Self&); //purposely not implemented
@@ -138,5 +137,4 @@ namespace clitk {
 #ifndef ITK_MANUAL_INSTANTIATION
 #include "clitkSliceBySliceRelativePositionFilter.txx"
 #endif
-
 #endif