In SliceBySliceSetBackgroundFromLineSeparation add keepIfEqual option

[clitk.git] / itk / clitkSliceBySliceRelativePositionFilter.h

diff --git a/itk/clitkSliceBySliceRelativePositionFilter.h b/itk/clitkSliceBySliceRelativePositionFilter.h
index 0da64dc76179a67f10746f2c615d88a627a6e157..5989e20054c5229a0146543a5be06dba1d60444c 100644 (file)
--- a/itk/clitkSliceBySliceRelativePositionFilter.h
+++ b/itk/clitkSliceBySliceRelativePositionFilter.h
@@ -53,6 +53,7 @@ namespace clitk {
     /** ImageDimension constants */
     itkStaticConstMacro(ImageDimension, unsigned int, ImageType::ImageDimension);
     typedef itk::Image<float, ImageDimension> FloatImageType;
+    typedef itk::Image<float, ImageDimension-1> FloatSliceType;
 
     /** Some convenient typedefs. */
     typedef typename ImageType::ConstPointer ImageConstPointer;
@@ -70,18 +71,37 @@ namespace clitk {
     void SetInputObject(const ImageType * image);
 
     // Options
-    void PrintOptions();
+    void PrintOptions(std::ostream & os = std::cout);
     itkGetConstMacro(Direction, int);
     itkSetMacro(Direction, int);
 
-    itkGetConstMacro(UniqueConnectedComponentBySlice, bool);
-    itkSetMacro(UniqueConnectedComponentBySlice, bool);
-    itkBooleanMacro(UniqueConnectedComponentBySlice);
+    itkGetConstMacro(UniqueConnectedComponentBySliceFlag, bool);
+    itkSetMacro(UniqueConnectedComponentBySliceFlag, bool);
+    itkBooleanMacro(UniqueConnectedComponentBySliceFlag);
 
     itkGetConstMacro(IgnoreEmptySliceObjectFlag, bool);
     itkSetMacro(IgnoreEmptySliceObjectFlag, bool);
     itkBooleanMacro(IgnoreEmptySliceObjectFlag);
 
+    itkGetConstMacro(UseTheLargestObjectCCLFlag, bool);
+    itkSetMacro(UseTheLargestObjectCCLFlag, bool);
+    itkBooleanMacro(UseTheLargestObjectCCLFlag);
+
+    itkGetConstMacro(ObjectCCLSelectionFlag, bool);
+    itkSetMacro(ObjectCCLSelectionFlag, bool);
+    itkBooleanMacro(ObjectCCLSelectionFlag);
+    itkGetConstMacro(ObjectCCLSelectionDimension, int);
+    itkSetMacro(ObjectCCLSelectionDimension, int);
+    itkGetConstMacro(ObjectCCLSelectionDirection, int);
+    itkSetMacro(ObjectCCLSelectionDirection, int);
+    itkGetConstMacro(ObjectCCLSelectionIgnoreSingleCCLFlag, bool);
+    itkSetMacro(ObjectCCLSelectionIgnoreSingleCCLFlag, bool);
+    itkBooleanMacro(ObjectCCLSelectionIgnoreSingleCCLFlag);
+
+    itkGetConstMacro(VerboseSlicesFlag, bool);
+    itkSetMacro(VerboseSlicesFlag, bool);
+    itkBooleanMacro(VerboseSlicesFlag);
+
   protected:
     SliceBySliceRelativePositionFilter();
     virtual ~SliceBySliceRelativePositionFilter() {}
@@ -94,9 +114,15 @@ namespace clitk {
     ImagePointer object;
     ImagePointer m_working_input;
     ImagePointer m_working_object;
-    bool         m_UniqueConnectedComponentBySlice;
+    bool         m_UniqueConnectedComponentBySliceFlag;
     int          m_Direction;
     bool         m_IgnoreEmptySliceObjectFlag;
+    bool         m_UseTheLargestObjectCCLFlag;
+    bool         m_ObjectCCLSelectionFlag;
+    int          m_ObjectCCLSelectionDimension;
+    int          m_ObjectCCLSelectionDirection;
+    bool         m_ObjectCCLSelectionIgnoreSingleCCLFlag;
+    bool         m_VerboseSlicesFlag;
 
   private:
     SliceBySliceRelativePositionFilter(const Self&); //purposely not implemented
@@ -112,4 +138,8 @@ namespace clitk {
 #include "clitkSliceBySliceRelativePositionFilter.txx"
 #endif
 
+typedef unsigned char                    PixelType_uchar;
+typedef itk::Image<PixelType_uchar, 3>   ImageType_uchar;    
+extern template class clitk::SliceBySliceRelativePositionFilter<ImageType_uchar>;
+
 #endif