added "-h" for help option VV

[clitk.git] / itk / clitkSliceBySliceRelativePositionFilter.txx

diff --git a/itk/clitkSliceBySliceRelativePositionFilter.txx b/itk/clitkSliceBySliceRelativePositionFilter.txx
index eff331daa9e6d99269629f4ba6f112aca2fcec96..db3c677c0e8701c2a424676fcd72117e26576b12 100644 (file)
--- a/itk/clitkSliceBySliceRelativePositionFilter.txx
+++ b/itk/clitkSliceBySliceRelativePositionFilter.txx
@@ -42,6 +42,7 @@ SliceBySliceRelativePositionFilter():
   SetObjectCCLSelectionDimension(0);
   SetObjectCCLSelectionDirection(1);
   ObjectCCLSelectionIgnoreSingleCCLFlagOff();
+  VerboseSlicesFlagOff();
 }
 //--------------------------------------------------------------------
 
@@ -182,6 +183,11 @@ GenerateOutputInformation()
                                                          m_working_input, 
                                                          this->GetObjectBackgroundValue());
     
+    // Index can be negative in some cases, and lead to problem with
+    // some filter. So we correct it.
+    m_working_input = clitk::RemoveNegativeIndexFromRegion<ImageType>(m_working_input);
+    m_working_object = clitk::RemoveNegativeIndexFromRegion<ImageType>(m_working_object);
+
     // End
     this->template StopCurrentStep<ImageType>(m_working_input);  
   }
@@ -286,6 +292,10 @@ GenerateOutputInformation()
         typedef clitk::AddRelativePositionConstraintToLabelImageFilter<SliceType> RelPosFilterType;
         typename RelPosFilterType::Pointer relPosFilter = RelPosFilterType::New();
         relPosFilter->VerboseStepFlagOff();
+        if (GetVerboseSlicesFlag()) {
+          std::cout << "Slice " << i << std::endl;
+          relPosFilter->VerboseStepFlagOn();
+        }
         relPosFilter->WriteStepFlagOff();
         // relPosFilter->VerboseMemoryFlagOn();
         relPosFilter->SetCurrentStepBaseId(this->GetCurrentStepId()+"-"+toString(i));