// Constructors & Destructors
//------------------------------------------------------------------------------------------------------------
-wxContourMainFrame* wxContourMainFrame:: instance = NULL;
+wxContourMainFrame* wxContourMainFrame::instance=NULL;
char wxContourMainFrame::COPY = 'C';
wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
_viewThresholdImage = NULL;
_viewThresholdImagePanel = NULL;
_viewColorLayerImagePanel = NULL;
-
_frameShowResultImages = NULL;
}
#elif defined(__GNUC__)
std::string str_home(getenv("HOME"));
#endif
- std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
- std::vector<std::string> conceptNameVect;
- std::vector<int> conceptSizeVect;
- notebook = this->createNotebook();
+ std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
+ std::vector<std::string> conceptNameVect;
+ std::vector<int> conceptSizeVect;
+ notebook = this->createNotebook();
kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
_instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
_theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
{
- if(instance == NULL){
- instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
+ if(instance == NULL)
+ {
+ instance=new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
}
return instance;
}
- std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
+ std::vector<vtkImageData*> wxContourMainFrame::getVectImages()
{
return kernelManager->getVectImages();
}
- wxContourMainFrame* wxContourMainFrame :: getInstance()
+ wxContourMainFrame* wxContourMainFrame::getInstance()
{
return instance;
}
- void wxContourMainFrame :: resetInstance()
+ void wxContourMainFrame::resetInstance()
{
instance->Destroy();
}
- wxContourMainFrame :: ~wxContourMainFrame()
+ wxContourMainFrame::~wxContourMainFrame()
{
delete _contourextractdata;
deleteAllContours();
// Creational and initialization methods using WxAui
//------------------------------------------------------------------------------------------------------------
//
- wxAuiNotebook * wxContourMainFrame :: createNotebook()
+ wxAuiNotebook * wxContourMainFrame::createNotebook()
{
wxSize client_size = GetClientSize();
wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
//------------------------------------------------------------------------------------------------------------
// Creational and initialization methods
//------------------------------------------------------------------------------------------------------------
- bool wxContourMainFrame :: configurePanels( )
+ bool wxContourMainFrame::configurePanels( )
{
bool configured = _theViewPanel!=NULL;
}
}
-void wxContourMainFrame :: createContour( int typeContour )
+void wxContourMainFrame::createContour( int typeContour )
{
//Creating the manualContourModel and including in the model
manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
std::vector<int> instantVector;
_instantPanel->getInstant( instantVector );
+
+ std::vector<int> tempVector;
+ getInstantVector( tempVector );
+ manModelContour->SetLabel2( std::to_string(tempVector[1]) );
+
std::string theName = kernelManager->createOutline(manModelContour, instantVector);
/*std::vector<int> instantVector;
_instantPanel->getInstant( instantVector );
//JCP 21 - 11 - 08
}
-void wxContourMainFrame::onDeleteContoursActSlice(){
+void wxContourMainFrame::onDeleteContoursActSlice()
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
- deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
+
+ std::vector<int> tempVector;
+ getInstantVector( tempVector );
+ deleteContours( getOutlinesName( tempVector[1] ) );
+// deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
+
}
void wxContourMainFrame::onDeleteAllContours(){
//JCP 20-10-08 Undo redo implementation
_instantPanel->getInstant(inst);
vtkImageData* img = kernelManager->getImageAtInstant(inst);
- if(img!=NULL){
+ if(img!=NULL)
+ {
_theViewPanel->changeImage(img);
showAxis(false);
}else{
int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
_theViewPanel->setImageSlice(z);
- }
+ } // if img
}
void wxContourMainFrame::updateInstantAxes()
mp->SetPointX( vecOut[0] );
mp->SetPointY( vecOut[1] );
mp->SetPointZ( vecOut[2] );
- }
+ } // for i
_theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
}
onLoadContours(filename,false);
}
-
void wxContourMainFrame::onLoad()
{
std::string fileNameContourROI = GetFileLocation();
if (dialog.ShowModal() == wxID_OK)
{
fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
- }
- }
-
+ } // if dialog
+ } // if FileLocation
onLoadContours(fileNameContourROI,true);
}
-
void wxContourMainFrame::SetZForAllContours(int pz)
{
//-- Normal Contours
std::vector< std::string > lstNameThings;
int i,sizeLstNameThings;
- int ii,sizeLstPoints;
-
+ int ii,sizeLstPoints;
lstNameThings = kernelManager->GetLstNameThings();
sizeLstNameThings = lstNameThings.size();
for (i=0 ; i<sizeLstNameThings ; i++)
readDimSpc(pFile,false); // DimSpc interactive OFF
openContours(pFile,pFileData,true); // Load StaticContours
SetZForAllContours(-900);
- }
- //AD:02-06-09
- else if (version=="1.0.1")
- {
+ } else if (version=="1.0.1") { //AD:02-06-09
openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
- }
-
- //AD:02-06-09
- else if (version=="1.0.0")
- {
+ } else if (version=="1.0.0") { //AD:02-06-09
openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
}
-
fclose(pFile);
-
if(pFileData != NULL)
{
fclose(pFileData);
} // if
- }
+ } // pFile
_theViewPanel->getSceneManager()->removeSceneContours();
changeInstant();
}
filename = dialog.GetPath().mb_str();
filenamecontours = kernelManager->parseOsirixFile(filename);
- if(filenamecontours.compare("") != 0){
+ if(filenamecontours.compare("") != 0)
+ {
onLoadContours(filenamecontours,true);
} // if
} // if
#else
wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
#endif
-
if (dialog.ShowModal() == wxID_OK)
{
filename = dialog.GetPath().mb_str();
} // if
}
-
//AD: 29-05-09
-void wxContourMainFrame::onSave(){
+void wxContourMainFrame::onSave()
+{
//CMRU 03-09-09-----------------------------------------------------------------------------------------------
if(GetFileLocation().empty())
{
kernelManager->setCurrentFileName(fileNameContourROI);
saveFileWithContours( fileNameContourROI );
}
- }
-//CMRU 03-09-09-----------------------------------------------------------------------------------------------
- else
- {
+ } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
std::string fileNameContourROI = GetFileLocation();
std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
{
wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
- wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
+// wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
+ wxFlexGridSizer *dialSizer = new wxFlexGridSizer(1);
- wxString lstOptOperation[2];
- lstOptOperation[0]=_T("By Dimension");
- lstOptOperation[1]=_T("By Spacing");
- wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation, 2, wxRA_SPECIFY_COLS);
+ wxString lstOptOperation[3];
+ lstOptOperation[0]=_T("By Dimension (XY)");
+ lstOptOperation[1]=_T("By Spacing (XY)");
+ lstOptOperation[2]=_T("By Spacing (XYZ)");
+ wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(370,200), 3 , lstOptOperation, 3, wxRA_SPECIFY_ROWS);
dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the ")) , 0, wxGROW );
dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?")) , 0, wxGROW );
dial->Layout();
dial->ShowModal();
- int _tmpReadFileTypeOfTransformation = -1;
+ _tmpReadFileTypeOfTransformation = -1;
//EED bool transform = false;
if (dial->GetReturnCode() == wxID_OK)
//AD:04-06-09
void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
{
-
+printf ("EED wxContourMainFrame::openContours Start \n");
char tmp[255];
vtkImageData *image = _images[0];
//nothing to do..
} else if (_tmpReadFileTypeOfTransformation==0){
double transX, transY;
- transX = (double) imageDim[0]/_tmpReadFileImageDim[0];
- transY = (double) imageDim[1]/_tmpReadFileImageDim[1];
- manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
+ transX = (double) imageDim[0]/_tmpReadFileImageDim[0]; // X
+ transY = (double) imageDim[1]/_tmpReadFileImageDim[1]; // Y
+ manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
} else if (_tmpReadFileTypeOfTransformation==1) {
double transX, transY;
- transX = (double) _tmpReadFileImageSpac[0]/imageDim[0];
- transY = (double) _tmpReadFileImageSpac[1]/imageDim[1];
+ transX = (double) _tmpReadFileImageSpac[0]/imageSpac[0]; // X
+ transY = (double) _tmpReadFileImageSpac[1]/imageSpac[1]; // Y
+ manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
+ } else if (_tmpReadFileTypeOfTransformation==2) { // with Z include
+ double transX, transY;
+ transX = (double) _tmpReadFileImageSpac[0]/imageSpac[0]; // X
+ transY = (double) _tmpReadFileImageSpac[1]/imageSpac[1]; // Y
+ instantVector[1]=instantVector[1]*_tmpReadFileImageSpac[2]/imageSpac[2]; // Z
manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
+ }else {
+ printf ("EED Warnning! wxContourMainFrame::openContours _tmpReadFileTypeOfTransformation not set. \n");
}
fscanf(pFile,"%s",tmp); // TypeView
/* } */
+printf ("EED wxContourMainFrame::openContours END \n");
+
}
void wxContourMainFrame::RefreshInterface()
int typeofcontour = 1;
//Image Data
vtkImageData *imagedata = getImageData();
-
//Tipo de pixeles a utilizar internamente en ITK
typedef float InternalPixelType;
const unsigned int Dimension = 2;
typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
-
//Tipo de pixeles de salida 1
typedef unsigned char OutputPixelType;
typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
-
//Tipo de pixeles de salida 2
typedef unsigned short OutputPixelType2;
typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
-
//DefiniciÛn del thresholder
typedef itk::BinaryThresholdImageFilter<
InternalImageType,
OutputImageType > ThresholdingFilterType;
-
//DefiniciÛn del primer filtro de conversiÛn de pixeles
typedef itk::CastImageFilter<
OutputImageType, OutputImageType2 > CastFilterType;
-
//DefiniciÛn del segundo tipo de conversiÛn de pixeles
typedef itk::CastImageFilter<
OutputImageType2, InternalImageType > CastFilterType2;
-
//Tercer tipo de conversiÛn
typedef itk::RescaleIntensityImageFilter<
InternalImageType,
OutputImageType > CastFilterType3;
-
//Cuarto tipo de conversiÛn
typedef itk::RescaleIntensityImageFilter<
OutputImageType,
OutputImageType > CastFilterType4;
-
ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
-
thresholder->SetLowerThreshold( 0.0 );
thresholder->SetUpperThreshold( 128 );
-
thresholder->SetOutsideValue( 255 );
thresholder->SetInsideValue( 0 );
-
//DefinciÛn de conexiÛnes entre VTK e ITK y el writer
typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
//EED10JUIN2011 typedef itk::ImageFileWriter< OutputImageType > WriterType;
-
- ConnectorType::Pointer connector= ConnectorType::New();
- ConnectorType2::Pointer connector2= ConnectorType2::New();
-
-
- CastFilterType::Pointer filter=CastFilterType::New();
- CastFilterType2::Pointer filter2=CastFilterType2::New();
-
+ ConnectorType::Pointer connector = ConnectorType::New();
+ ConnectorType2::Pointer connector2 = ConnectorType2::New();
+ CastFilterType::Pointer filter = CastFilterType::New();
+ CastFilterType2::Pointer filter2 = CastFilterType2::New();
connector->SetInput( imagedata );
filter2->SetInput(connector->GetOutput());
-
typedef itk::CurvatureAnisotropicDiffusionImageFilter<
InternalImageType,
InternalImageType > SmoothingFilterType;
-
SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
-
typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
InternalImageType,
InternalImageType > GradientFilterType;
-
typedef itk::SigmoidImageFilter<
InternalImageType,
InternalImageType > SigmoidFilterType;
-
GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
-
SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
-
sigmoid->SetOutputMinimum( 0.0 );
sigmoid->SetOutputMaximum( 255.0 );
-
-
typedef itk::FastMarchingImageFilter<
InternalImageType,
InternalImageType > FastMarchingFilterType;
-
-
FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
-
-printf("EED wxContourMainFrame::SegmentationOneSliceITK Skypping this code. Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1 \n ");
-/*EED 17 sept 2010
- > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1
-
-
typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
InternalImageType > GeodesicActiveContourFilterType;
GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
GeodesicActiveContourFilterType::New();
-
typedef itk::ZeroCrossingImageFilter<
InternalImageType,
InternalImageType > ZeroCrossingFilterType;
ZeroCrossingFilterType::Pointer zeroCrossing =
ZeroCrossingFilterType::New();
-
const double propagationScaling = atof( crea::wx2std(prop).c_str() );
-
geodesicActiveContour->SetPropagationScaling( propagationScaling );
geodesicActiveContour->SetCurvatureScaling( 1.0 );
geodesicActiveContour->SetAdvectionScaling( 1.0 );
-
geodesicActiveContour->SetMaximumRMSError( 0.02 );
int it=atoi( crea::wx2std(iter).c_str() );
geodesicActiveContour->SetNumberOfIterations( it );
-
smoothing->SetInput( filter2->GetOutput() );
gradientMagnitude->SetInput( smoothing->GetOutput() );
sigmoid->SetInput( gradientMagnitude->GetOutput() );
fastMarching->SetInput( sigmoid->GetOutput() );
geodesicActiveContour->SetInput( fastMarching->GetOutput() );
geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
-
zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
//thresholder->SetInput( zeroCrossing->GetOutput() );
thresholder->SetInput( geodesicActiveContour->GetOutput() );
connector2->SetInput( thresholder->GetOutput() );
-
-< - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < -
-*/
-
-
-
-
smoothing->SetTimeStep( 0.125 );
smoothing->SetNumberOfIterations( 5 );
smoothing->SetConductanceParameter( 9.0 );
-
-
- const double sigma = atof( crea::wx2std(sigm).c_str() );
+ const double sigma = atof( crea::wx2std(sigm).c_str() );
gradientMagnitude->SetSigma( sigma );
-
- const double alpha = atof( crea::wx2std(alf).c_str() );
- const double beta = atof( crea::wx2std(bet).c_str() );
-
+ const double alpha = atof( crea::wx2std(alf).c_str() );
+ const double beta = atof( crea::wx2std(bet).c_str() );
sigmoid->SetAlpha( alpha );
sigmoid->SetBeta( beta );
-
typedef FastMarchingFilterType::NodeContainer NodeContainer;
typedef FastMarchingFilterType::NodeType NodeType;
-
NodeContainer::Pointer seeds = NodeContainer::New();
-
InternalImageType::IndexType seedPosition;
- seedPosition[0] = x;
- seedPosition[1] = y;
-
+ seedPosition[0] = x;
+ seedPosition[1] = y;
const double initialDistance = atof( crea::wx2std(distanc).c_str() );
-
NodeType node;
-
const double seedValue = - initialDistance;
-
node.SetValue( seedValue );
node.SetIndex( seedPosition );
-
seeds->Initialize();
seeds->InsertElement( 0, node );
-
fastMarching->SetTrialPoints( seeds );
-
fastMarching->SetSpeedConstant( 1.0 );
-
- fastMarching->SetOutputSize(
- connector->GetOutput()->GetBufferedRegion().GetSize() );
-
+ fastMarching->SetOutputSize( connector->GetOutput()->GetBufferedRegion().GetSize() );
fastMarching->SetStoppingValue( 800 );
try
{
-
- connector2->Update();
- vtkImageData *idata = connector2->GetOutput();
-
- vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
-
- cntVTK->SetNumberOfContours( 1 );
- cntVTK->SetValue( 0, 255 );
+// connector2->Update();
+ vtkImageData *idata = NULL;
+ idata = connector2->GetOutput();
+ vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
+ cntVTK->SetNumberOfContours( 1 );
+ cntVTK->SetValue( 0, 255 );
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
- cntVTK->SetInput( idata );
- cntVTK->Update( );
- cntVTK->UpdateInformation();
+ cntVTK->SetInput( idata );
+ cntVTK->Update( );
+ cntVTK->UpdateInformation();
#else
- cntVTK->SetInputData( idata );
+ cntVTK->SetInputData( idata );
#endif
-
- vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
-
+ vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
- cpd->SetInput( cntVTK->GetOutput( ) );
- cpd->Update( );
- cpd->UpdateInformation();
+ cpd->SetInput( cntVTK->GetOutput( ) );
+ cpd->Update( );
+ cpd->UpdateInformation();
#else
- cpd->SetInputData( cntVTK->GetOutput( ) );
+ cpd->SetInputData( cntVTK->GetOutput( ) );
#endif
-
-
- vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
- conn->SetExtractionModeToLargestRegion( );
+ vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
+ conn->SetExtractionModeToLargestRegion( );
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
- conn->SetInput( cpd->GetOutput( ) );
- conn->Update( );
- conn->UpdateInformation();
+ conn->SetInput( cpd->GetOutput( ) );
+ conn->Update( );
+ conn->UpdateInformation();
#else
- conn->SetInputData( cpd->GetOutput( ) );
+ conn->SetInputData( cpd->GetOutput( ) );
#endif
-
-
- vtkStripper* vtkstripper = vtkStripper::New( );
-
+ vtkStripper* vtkstripper = vtkStripper::New( );
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
- vtkstripper->SetInput( conn->GetOutput() );
- vtkstripper->Update();
- vtkstripper->UpdateInformation();
+ vtkstripper->SetInput( conn->GetOutput() );
+ vtkstripper->Update();
+ vtkstripper->UpdateInformation();
#else
- vtkstripper->SetInputData( conn->GetOutput() );
- cntVTK->Update();
+ vtkstripper->SetInputData( conn->GetOutput() );
+ cntVTK->Update();
#endif
-
- vtkPolyData* polyDataResult = cntVTK->GetOutput();
- //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
+ vtkPolyData* polyDataResult = cntVTK->GetOutput();
+ //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
- polyDataResult->Update( );
- polyDataResult->UpdateInformation();
+ polyDataResult->Update( );
+ polyDataResult->UpdateInformation();
#else
// ..
#endif
-
- //EED
- /*
- ofstream myfile;
- myfile.open ("C:/Creatis/example.txt");
- myfile << "\n";
- polyDataResult->Print(myfile);
- myfile << "-------------------------------------\n";
- polyDataResult->GetLines()->Print(myfile);
- myfile.close();*/
-
- cntVTK -> Delete();
- cpd -> Delete();
- conn -> Delete();
-
-
- //--Calculating control points
-
- std::vector<double> vecX;
- std::vector<double> vecY;
- std::vector<double> vecXo;
- std::vector<double> vecYo;
- std::vector<double>::iterator vecXoi;
- std::vector<double>::iterator vecYoi;
- std::vector<double> vecZ;
-
- std::vector<double> vecCtrlPointX;
- std::vector<double> vecCtrlPointY;
- std::vector<double> vecCtrlPointZ;
-
-
- double *p;
- double xAct=0;
- double yAct=0;
- int ii,size=polyDataResult->GetNumberOfPoints();
- ofstream myfile;
- myfile.open ("C:/Creatis/example2.txt");
-
- size=polyDataResult->GetNumberOfPoints();
- for (ii=0;ii<size;ii++)
- {
- if(ii==0)
- {
- xAct=x;
- yAct=y;
- }
- p = polyDataResult->GetPoint(ii);
- double x=p[0];
- double y=p[1];
- /*if(fabs(yAct-y)>20)
+ cntVTK -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
+ //--Calculating control points
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecXo;
+ std::vector<double> vecYo;
+ std::vector<double>::iterator vecXoi;
+ std::vector<double>::iterator vecYoi;
+ std::vector<double> vecZ;
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+ double *p;
+ double xAct=0;
+ double yAct=0;
+ int ii,size=polyDataResult->GetNumberOfPoints();
+ ofstream myfile;
+ myfile.open ("C:/Creatis/example2.txt");
+ size=polyDataResult->GetNumberOfPoints();
+ for (ii=0;ii<size;ii++)
{
- if((xAct-x)>1 || (xAct-x)<-1)
+ if(ii==0)
{
- vecX.push_back( p[0] );
- vecY.push_back( p[1] );
- myfile <<p[0]<<","<<p[1]<<"\n";
- std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
- std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
- std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
- vecZ.push_back( 900 );
- xAct=x;
- yAct=y;
+ xAct=x;
+ yAct=y;
}
- else
+ p = polyDataResult->GetPoint(ii);
+ double x=p[0];
+ double y=p[1];
+// if(fabs(yAct-y)>20)
+// {
+// if((xAct-x)>1 || (xAct-x)<-1)
+// {
+// vecX.push_back( p[0] );
+// vecY.push_back( p[1] );
+// myfile <<p[0]<<","<<p[1]<<"\n";
+// std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+// std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+// std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+// vecZ.push_back( 900 );
+// xAct=x;
+// yAct=y;
+// } else {
+// vecXo.push_back(p[0]);
+// vecYo.push_back(p[1]);
+// }
+// } else
+
+ if(fabs(xAct-x)>11)
{
vecXo.push_back(p[0]);
vecYo.push_back(p[1]);
- }
-
- }
- else*/ if(fabs(xAct-x)>11)
- {
- vecXo.push_back(p[0]);
- vecYo.push_back(p[1]);
- } else {
- vecX.push_back( p[0] );
- myfile <<p[0]<<","<<p[1]<<"\n";
- //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
- //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
- //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
- vecY.push_back( p[1] );
+ } else {
+ vecX.push_back( p[0] );
+ myfile <<p[0]<<","<<p[1]<<"\n";
+ //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+ //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+ //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+ vecY.push_back( p[1] );
//EED 2017-12-16
- vecZ.push_back( -900 );
- xAct = x;
- yAct = y;
- } // if xAct
-
+ vecZ.push_back( -900 );
+ xAct = x;
+ yAct = y;
+ } // if xAct
- }
- while(!vecXo.empty())
- {
- vecX.push_back(vecXo.back());
- //std::cout<<" x Siguiente "<<vecXo.back();
- vecXo.pop_back();
-//EED 2017-12-16
- vecZ.push_back( -900 );
- }
- while(!vecYo.empty())
- {
- vecY.push_back(vecYo.back());
- vecYo.pop_back();
- }
- myfile.close();
+ } // for
- /*for(int l=0;l<vecX.size();l++)
- {
- if(l==0)
+ while(!vecXo.empty())
{
- vecXo.push_back(p[0]);
- vecYo.push_back(p[1]);
+ vecX.push_back(vecXo.back());
+ //std::cout<<" x Siguiente "<<vecXo.back();
+ vecXo.pop_back();
+ //EED 2017-12-16
+ vecZ.push_back( -900 );
}
- else
+ while(!vecYo.empty())
{
- if(vecXoi[l-1]==)
- {
- }
+ vecY.push_back(vecYo.back());
+ vecYo.pop_back();
}
+ myfile.close();
+
+// for(int l=0;l<vecX.size();l++)
+// {
+// if(l==0)
+// {
+// vecXo.push_back(p[0]);
+// vecYo.push_back(p[1]);
+// } else {
+// if(vecXoi[l-1]==)
+// {
+// }
+// } // if
+// } // for
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+
+ int method=2;
+ if (method==0)
+ {
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ } else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ } else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( 15 );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ //--Adding contour to the system
- }*/
-
- ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
-
- extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
-
- int method=2;
- if (method==0){
- extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- else if (method==1){
- extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- else if (method==2){
- extractcontrolpoints2d->SetSamplingControlPoints( 15 );
- extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- //--Adding contour to the system
-
- std::vector<int> actualInstantVector;
- _instantPanel->getInstant( actualInstantVector );
- actualInstantVector[1]=z;
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
- int j,sizeCtrPt = vecCtrlPointX.size();
+ int j,sizeCtrPt = vecCtrlPointX.size();
- manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
- manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
- if (sizeCtrPt>=3){
- for (j=0 ; j<sizeCtrPt ; j++)
- {
- manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
- } // for
- std::string theName;
- //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
- theName = kernelManager->createOutline( manModelContour, actualInstantVector );
- bool addedModel = theName.compare("") != 0;
- if( addedModel )
- {
- double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
- _theViewPanel->getSpacing(spc);
- //Adding the manualContourControler to interface objects structure
- //Adding the manualViewContour to interface objects structure
- //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
- _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
- //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
- } // if addedModel
- } // if sizeCtrPt
+ manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
+ if (sizeCtrPt>=3){
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+ } catch( itk::ExceptionObject & excep ) {
+ std::cerr << "Exception caught !" << std::endl;
+ std::cerr << excep << std::endl;
+ } // try
-/*
-//EED10JUIN2011
- WriterType::Pointer writer = WriterType::New();
- CastFilterType3::Pointer caster = CastFilterType3::New();
-
- caster->SetInput( gradientMagnitude->GetOutput() );
- writer->SetInput( caster->GetOutput() );
- writer->SetFileName("Gradient Magnitude.png");
- caster->SetOutputMinimum( 0 );
- caster->SetOutputMaximum( 255 );
- writer->Update();
-
- CastFilterType3::Pointer caster2 = CastFilterType3::New();
- WriterType::Pointer writer2 = WriterType::New();
-
- caster2->SetInput( sigmoid->GetOutput() );
- writer2->SetInput( caster2->GetOutput() );
- writer2->SetFileName("Sigmoid.png");
- caster2->SetOutputMinimum( 0 );
- caster2->SetOutputMaximum( 255 );
- writer2->Update();
-
- CastFilterType3::Pointer caster3 = CastFilterType3::New();
- WriterType::Pointer writer3 = WriterType::New();
-
- caster3->SetInput( fastMarching->GetOutput() );
- writer3->SetInput( caster3->GetOutput() );
- writer3->SetFileName("FastMarching.bmp");
- caster3->SetOutputMinimum( 0 );
- caster3->SetOutputMaximum( 255 );
- writer3->Update();
-
- CastFilterType3::Pointer caster4 = CastFilterType3::New();
- WriterType::Pointer writer4 = WriterType::New();
-
- caster4->SetInput( geodesicActiveContour->GetOutput() );
- writer4->SetInput( caster4->GetOutput() );
- writer4->SetFileName("GeodesicActiveContour.png");
- caster4->SetOutputMinimum( 0 );
- caster4->SetOutputMaximum( 255 );
- writer4->Update();
-
- CastFilterType3::Pointer caster5 = CastFilterType3::New();
- WriterType::Pointer writer5 = WriterType::New();
-
- caster5->SetInput( zeroCrossing->GetOutput() );
- writer5->SetInput( caster5->GetOutput() );
- writer5->SetFileName("ZeroCrossing.bmp");
- caster5->SetOutputMinimum( 0 );
- caster5->SetOutputMaximum( 255 );
- writer5->Update();
-*/
- }
- catch( itk::ExceptionObject & excep )
- {
- std::cerr << "Exception caught !" << std::endl;
- std::cerr << excep << std::endl;
- }
}
void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
{
+
+printf("EED wxContourMainFrame::SegmentationOneSlice Start=%d %d\n",sampling,method );
+printf("EED wxContourMainFrame::SegmentationOneSlice %d %d %d \n",x,y,z );
+
int typeofcontour = 1;
//--Extracting Contour
- //vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
vtkImageData *imagedata = getImageData();
-// double *range = imagedata->GetScalarRange();
-// double thr = 1;
vtkImageReslice *imageReslice = vtkImageReslice::New();
//EED
-// double spc[3];
-// imagedata->GetSpacing(spc);
-// x = x*spc[0];
-// y = y*spc[1];
-// z = z*spc[3];
+ double spc[3];
+ imagedata->GetSpacing(spc);
+ x = x*spc[0];
+ y = y*spc[1];
+ z = z;
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
#endif
imageReslice->SetInformationInput(imagedata);
imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
- imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
imageReslice->SetOutputDimensionality(2);
imageReslice->SetInterpolationModeToLinear();
cpd->UpdateInformation();
vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
- conn->SetExtractionModeToClosestPointRegion( );
+
+// conn->SetExtractionModeToPointSeededRegions();
+// conn->SetExtractionModeToCellSeededRegions();
+// conn->SetExtractionModeToSpecifiedRegions();
+// conn->SetExtractionModeToLargestRegion();
+// conn->SetExtractionModeToAllRegions();
+
+ conn->SetExtractionModeToClosestPointRegion();
+
//conn->SetMaxRecursionDepth( 3000 );
//EED 2017-01-01 Migration VTK7
cpd2->UpdateInformation();
vtkStripper* vtkstripper = vtkStripper::New( );
+vtkstripper->SetJoinContiguousSegments(true);
+ vtkstripper->SetMaximumLength(20000);
//EED 2017-01-01 Migration VTK7
#if VTK_MAJOR_VERSION <= 5
vtkstripper->SetInput( cpd2->GetOutput() );
#else
vtkstripper->SetInputData( cpd2->GetOutput() );
+// vtkstripper->SetInputData( cntVTK->GetOutput() );
+
#endif
vtkstripper->Update();
vtkstripper->UpdateInformation();
polyDataResult->GetLines()->Print(myfile);
myfile.close();
*/
-
- cntVTK -> Delete();
- cpd2 -> Delete();
- cpd -> Delete();
- conn -> Delete();
-
+ cntVTK -> Delete();
+ cpd2 -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
//--Calculating control points
-
std::vector<double> vecX;
std::vector<double> vecY;
std::vector<double> vecZ;
-
std::vector<double> vecCtrlPointX;
std::vector<double> vecCtrlPointY;
std::vector<double> vecCtrlPointZ;
+printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
- double *p;
- int ii,size=polyDataResult->GetNumberOfPoints();
- int id;
- for (ii=1;ii<=size;ii++)
- {
- id = polyDataResult->GetLines()->GetData()->GetValue(ii);
- p = polyDataResult->GetPoint(id);
-// double x=p[0];
-// double y=p[1];
- vecX.push_back( p[0] );
- vecY.push_back( p[1] );
-//EED 2017-12-16
- vecZ.push_back( -900 );
-// vecZ.push_back( p[2] );
- }
+int numberOfPointsInCell;
+int numberOfcells=polyDataResult->GetNumberOfCells();
+for (int jj=0; jj<numberOfcells ; jj++)
+{
+ vtkCell* vtkcell = polyDataResult->GetCell( jj );
+ numberOfPointsInCell=vtkcell->GetNumberOfPoints();
+ printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d points=%d \n",jj,numberOfPointsInCell );
+}// for jj
+printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
- ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
- extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
-//PROOFS
- /*if (methodRadiobox->GetSelection()==0){
- extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- if (methodRadiobox->GetSelection()==1){
- extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- if (methodRadiobox->GetSelection()==2){
- extractcontrolpoints2d->SetSamplingControlPoints( sampling );
- extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }*/
- if (method==0){
- extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- else if (method==1){
- extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- else if (method==2){
- extractcontrolpoints2d->SetSamplingControlPoints( sampling );
- extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
+ if (polyDataResult->GetNumberOfCells()>0)
+ {
+ double *p;
+ printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
+ vtkCell* vtkcell = polyDataResult->GetCell( 0 );
+ printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
+ // int ii,size=polyDataResult->GetNumberOfPoints();
+ int ii,size=vtkcell->GetNumberOfPoints();
+ printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
+ int id;
+ for (ii=0;ii<size;ii++)
+ {
+ // id = polyDataResult->GetLines()->GetData()->GetValue(ii);
+ // p = polyDataResult->GetPoint(id);
+ p = vtkcell->GetPoints()->GetPoint(ii);
- //--Adding contour to the system
+ printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d px=%f py=%f\n",ii,id, p[0],p[1]);
+ // double x=p[0];
+ // double y=p[1];
+ vecX.push_back( p[0] );
+ vecY.push_back( p[1] );
+ //EED 2017-12-16
+ vecZ.push_back( -900 );
+ // vecZ.push_back( p[2] );
+ }
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
- std::vector<int> actualInstantVector;
- _instantPanel->getInstant( actualInstantVector );
- actualInstantVector[1]=z;
+ //PROOFS
+ /*if (methodRadiobox->GetSelection()==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }*/
- int j,sizeCtrPt = vecCtrlPointX.size();
- manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
- manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
- if (sizeCtrPt>=3){
- for (j=0 ; j<sizeCtrPt ; j++)
+ if (method==0)
{
- manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
- } // for
- std::string theName;
- //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
- theName = kernelManager->createOutline( manModelContour, actualInstantVector );
- bool addedModel = theName.compare("") != 0;
- if( addedModel )
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ } else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ } else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+
+ //--Adding contour to the system
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+ manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
+ manModelContour->SetLabel2( std::to_string(z) );
+ if (sizeCtrPt>=3)
{
- double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
- _theViewPanel->getSpacing(spc);
- //Adding the manualContourControler to interface objects structure
- //Adding the manualViewContour to interface objects structure
- //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
- _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
- //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
- } // if addedModel
- } // if sizeCtrPt
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+ } // if NumberOfCells > 0
+
+printf("EED wxContourMainFrame::SegmentationOneSlice End\n");
}
-int wxContourMainFrame::GetImageDataSizeZ(){
+
+int wxContourMainFrame::GetImageDataSizeZ()
+{
return _theViewPanel->GetImageDataSizeZ();
}
-void wxContourMainFrame::GetImageDataRange(double *range){
+void wxContourMainFrame::GetImageDataRange(double *range)
+{
_theViewPanel->GetImageDataRange(range);
}
-void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
+void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
wxBusyCursor wait;
- int x = _theViewPanel->GetX();
- int y = _theViewPanel->GetY();
- int z;
- double porcent;
- wxString tmpString;
- double totalZ = maxZ-minZ+1;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z;
+ double porcent;
+ wxString tmpString;
+ double totalZ = maxZ-minZ+1;
for( z=minZ ; z<=maxZ ; z++ )
{
porcent = 100.0* (z-minZ)/totalZ;
RefreshInterface();
}
+void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
+{
+ _theViewPanel->onBeforeAfterContour(before,after);
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onJumpSlice(int step, int shift)
+{
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int ss = abs(step);
+ int pos = tempVector[1];
+ int maxZ = interfMainPanel::getInstance()->GetImageDataSizeZ();
+ pos=(pos/ss)*ss+step+shift;
+ if ((pos>=0) && (pos<maxZ))
+ {
+ tempVector[1]=pos;
+ _instantPanel->setInstant( tempVector );
+ RefreshInterface();
+ } // if pos
+}
+
+void wxContourMainFrame::onShowTextContour(bool show)
+{
+ _theViewPanel->onShowTextContour(show);
+ RefreshInterface();
+}
+
void wxContourMainFrame::onChangeInstant(std::string name,int actual)
{
_instantPanel->setConceptValue( name, actual );
}
-
void wxContourMainFrame::resetAppend()
{
kernelManager->resetAppend();
}
-
void wxContourMainFrame::onSpreadAdd()
{
std::vector<double> vecX;
void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
{
+ _instantPanel->getInstant( tempVector );
}
std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
valueChInfo->SetInputData(value);
#endif
valueChInfo->SetSpacingScale(spc);
+ valueChInfo->Update();
vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
//EED 2017-01-01 Migration VTK7
maskChInfo->SetInputData(mask);
#endif
maskChInfo->SetSpacingScale(spc);
+ maskChInfo->Update();
vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
//EED 2017-01-01 Migration VTK7
}
-void wxContourMainFrame::saveFileWithContoursAutomatique(){
+void wxContourMainFrame::saveFileWithContoursAutomatique()
+{
+printf("EED wxContourMainFrame::saveFileWithContoursAutomatique \n");
std::string filename = kernelManager->getCurrentFileName();
if(filename.compare("")!=0){
saveFileWithContours(filename);
onSave();
}
}
-void wxContourMainFrame::ShowToolsPanel(bool show){
+void wxContourMainFrame::ShowToolsPanel(bool show)
+{
_pannew->Show(show);
}
return _viewColorLayerImagePanel;
}
+void wxContourMainFrame::SetColorLayerImage(vtkImageData* img)
+{
+ if (_viewColorLayerImagePanel!=NULL)
+ {
+ if (img!=NULL)
+ {
+ _viewColorLayerImagePanel->SetActive(true);
+ _viewColorLayerImagePanel->SetImage( img );
+// RefreshInterface();
+ } // img
+ } // _viewColorLayerImagePanel
+}
wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
{
{
double range[2];
_theViewPanel->getImageData()->GetScalarRange(range);
- int min = (int)floor (range[0]);
- int max = (int)ceil (range[1]);
- int start= (max+min)/2 - (max-min)*0.25;
- int end= (max+min)/2 + (max-min)*0.25;
- _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
- _viewThresholdImage = new ThresholdImageView();
+ int min = (int)floor (range[0]);
+ int max = (int)ceil (range[1]);
+ int start = (max+min)/2 - (max-min)*0.25;
+ int end = (max+min)/2 + (max-min)*0.25;
+ _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
+ _viewThresholdImage = new ThresholdImageView();
_viewThresholdImage->SetminMaxValue(start,end);
+// _viewThresholdImage->SetminMaxValue(range[0],range[1]);
_viewThresholdImage->SetImage( _theViewPanel->getImageData() );
std::vector<int> colorbarposition;
colorbarposition.push_back( 10 );
{
_fileLocation = newFileLocation;
std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
+
+//EED 2019-12-17
+ kernelManager->setCurrentFileName(_fileLocation);
}
//------------------------------------------------------------------------------------------------------------
sizeLstNameThings = lstNameThings.size();
for (i=0 ; i<sizeLstNameThings ; i++)
{
- printf("EED wxContourMainFrame::FlipAllContours contour=%d \n", i );
manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
if (flipDirection==0)
{
void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
{
- printf("EED wxContourMainFrame::FlipContours( %d , %d ) \n",typeContourFlip, flipDirection );
-
saveState();
if (typeContourFlip==0) //
RefreshInterface();
}
+void wxContourMainFrame::SetXY(int x, int y)
+{
+ _theViewPanel->SetXY(x,y);
+}
+wxVtkBaseView* wxContourMainFrame::GetWxVtkBaseView()
+{
+ if (_theViewPanel!=NULL)
+ {
+ return _theViewPanel->getWxVtkBaseView();;
+ } else {
+ return NULL;
+ }
+}
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff