+/*# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+# pour la Sant�)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+# This software is governed by the CeCILL-B license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL-B
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+# or in the file LICENSE.txt.
+#
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
+
//----------------------------------------------------------------------------------------------------------------
// Class definition include
//----------------------------------------------------------------------------------------------------------------
// _gridPanel = NULL;
// _drawToolsPanel = NULL;
// _operationsToolsPanel = NULL;
- //_autoFormsPanel = NULL;
+ //_autoFormsPanel = NULL;
// _standardToolsPanel = NULL;
// _editionToolsPanel = NULL;
// _listViewPanel = NULL;
// _sceneManager = NULL;
- //_actualInstant = NULL;
- _numberOfVariablesStatistics = 6+1;
+ //_actualInstant = NULL;
+ _numberOfVariablesStatistics= 6+1;
_refLineControl = NULL;
_refLineModel = NULL;
_viewMaskImagePanel = NULL;
_viewThresholdImage = NULL;
_viewThresholdImagePanel = NULL;
- _viewColorLayerImage = NULL;
_viewColorLayerImagePanel = NULL;
+
+ _frameShowResultImages = NULL;
}
- wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
+ wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
: wxPanel(parent, id, pos, size, style)
{
m_mgr.SetManagedWindow(this);
_contourGroup = 1;
_creatingContoursActive = false;
_theViewPanel = NULL;
-
_instantPanel = NULL;
_refLineControl = NULL;
_refLineModel = NULL;
_viewMaskImagePanel = NULL;
_viewThresholdImage = NULL;
_viewThresholdImagePanel = NULL;
- _viewColorLayerImage = NULL;
_viewColorLayerImagePanel = NULL;
-
// set up default notebook style
- m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
- m_notebook_theme = 0;
+ m_notebook_style = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
+ m_notebook_theme = 0;
//wxContour_ActionCommandsID a;
- _numberOfVariablesStatistics = 7;
-
- _datadir = datadir;
-
-
- inredo = 0;
- inundo = 0;
-
+ _numberOfVariablesStatistics= 7;
+ _datadir = datadir;
+ inredo = 0;
+ inundo = 0;
_pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
- _performingOperation = new PerformingOperation();
-
+ _performingOperation = new PerformingOperation();
if(images.size() > 0)
{
this->setVectImages(images);
}
-
_contourextractdata = NULL;
}
void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
{
-
_images = imgs;
-
- #if defined(__GNUC__)
+ #if defined(_WIN32)
+ std::string str_home(getenv("USERPROFILE"));
+ #elif defined(__GNUC__)
std::string str_home(getenv("HOME"));
- #elif defined(_WIN32)
- std::string str_home(getenv("USERPROFILE"));
#endif
- std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
-
- std::vector<std::string> conceptNameVect;
- std::vector<int> conceptSizeVect;
-
- notebook = this->createNotebook();
-
-
- kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
-
-
- _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
- _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
-
+ std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
+ std::vector<std::string> conceptNameVect;
+ std::vector<int> conceptSizeVect;
+ notebook = this->createNotebook();
+ kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
+ _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
+ _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
//-------------------------------------------------------------
kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
_instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
-
-
double val = _theViewPanel->getCurrentDeep();
_instantPanel->setConceptValue( "Axe Depth", (int)val );
//JCP _instantPanel->setConceptValue("time", num de imagenes);
ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
//*******************changeInstant();
_theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
-
this->configurePanels( );
-
}
notebook->AddPage( _theViewPanel, wxT(" View ") );
m_mgr.Update();
}
-
-
if( configured )
{
notebook->AddPage( _instantPanel, wxT("Instant Page") );
m_mgr.Update();
}
-
m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
m_mgr.Update();
-
SetMinSize(wxSize(300,300));
m_mgr.Update();
return configured;
createContour( 1 );
}
-void wxContourMainFrame::onCreateContourRectangle( ){
+
+void wxContourMainFrame::onCreateContourRectangle( )
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
createContour( 2 );
}
-void wxContourMainFrame::onCreateContourCircle( ){
+
+void wxContourMainFrame::onCreateContourCircle( )
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
createContour( 3 );
}
-void wxContourMainFrame::onCreateContourLine( ){
+void wxContourMainFrame::onCreateContourLine( )
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
}
// RaC 09-09 --------------------------------------
-void wxContourMainFrame::onCreateContourPoints( ){
+void wxContourMainFrame::onCreateContourPoints( )
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
// RaC 09-09 --------------------------------------
// RaC 10-09 --------------------------------------
-void wxContourMainFrame::onCreateContourPolygon( ){
+void wxContourMainFrame::onCreateContourPolygon( )
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
}
}
-void wxContourMainFrame :: createContour( int typeContour )
+
+void wxContourMainFrame::createContour( int typeContour )
{
//Creating the manualContourModel and including in the model
manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
-
std::vector<int> instantVector;
_instantPanel->getInstant( instantVector );
- std::string theName = kernelManager->createOutline(manModelContour, instantVector);
+ std::vector<int> tempVector;
+ getInstantVector( tempVector );
+ manModelContour->SetLabel2( std::to_string(tempVector[1]) );
+
+ std::string theName = kernelManager->createOutline(manModelContour, instantVector);
/*std::vector<int> instantVector;
_instantPanel->getInstant( instantVector );
std::string theName;
//Adding the manualViewContour to interface objects structure
//_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
- }
-
+ } // if addedModel
}
+
manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
return manModelContour;
}
-void wxContourMainFrame :: saveState(){
+void wxContourMainFrame :: saveState()
+{
std::string temp = kernelManager->saveState();
saveFileWithContours(temp);
}
-void wxContourMainFrame::onDeleteContour(){
+void wxContourMainFrame::onDeleteContour()
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
}
}
-void wxContourMainFrame :: deleteContour( std::string theKeyName ){
+void wxContourMainFrame :: deleteContour( std::string theKeyName )
+{
/*
manualContourModel * cModel;
manualViewBaseContour * cViewer;
//JCP 21 - 11 - 08
}
-void wxContourMainFrame::onDeleteContoursActSlice(){
+void wxContourMainFrame::onDeleteContoursActSlice()
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
- deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
+
+ std::vector<int> tempVector;
+ getInstantVector( tempVector );
+ deleteContours( getOutlinesName( tempVector[1] ) );
+// deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
+
}
void wxContourMainFrame::onDeleteAllContours(){
//JCP 20-10-08 Undo redo implementation
JCP --08-09-2008 */
}
-void wxContourMainFrame::setConceptValue( std::string name, int value ){
+void wxContourMainFrame::setConceptValue( std::string name, int value )
+{
_instantPanel->setConceptValue(name, value);
}
-ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
+ConceptDataWrap* wxContourMainFrame::getLastConceptData()
+{
return _instantPanel->getLastConceptData();
}
-bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
+bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
+{
return _instantPanel->getIfConceptCheckedAt( name, pos );
}
nTypeView.push_back(2);
nTypeView.push_back(0);
- wxFrame *frame = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
- wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
- m_mgr_noteBookViewerResult->SetManagedWindow(frame);
+ if (_frameShowResultImages==NULL)
+ {
+// wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
+ _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
+ wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION | wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER );
+
+ wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
+ m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
- wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(frame, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
- m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
+ wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
+ m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
- wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
- wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
+ wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
+ wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
- noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
- noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
- m_mgr_noteBookViewerResult->Update();
- frame->Show();
+ noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
+ noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
+ m_mgr_noteBookViewerResult->Update();
+ _frameShowResultImages->Show();
+ } // if _frameShowResultImages
}
std::vector<int> instantVect;
_instantPanel->getInstant( instantVect );
int actualSlice = instantVect[1];
-
kernelManager->setInstant(instantVect);
-
// Refresh Mask image
- if(_viewMaskImage!=NULL){
+ if(_viewMaskImage!=NULL)
+ {
_viewMaskImage->SetZ(actualSlice);
if (_viewMaskImagePanel->IsVisible()==true)
{
getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
_viewMaskImage->onThreshold();
}
- }
-
+ } // if _viewMaskImage
// Refresh Threshold image
- if(_viewThresholdImage!=NULL){
+ if(_viewThresholdImage!=NULL)
+ {
_viewThresholdImage->SetZ(actualSlice);
- if (_viewThresholdImagePanel->IsVisible()==true){
+ if (_viewThresholdImagePanel->IsVisible()==true)
+ {
_viewThresholdImage->onThreshold();
}
- }
-
- // Refresh Threshold image
- if(_viewColorLayerImage!=NULL){
- _viewColorLayerImage->SetZ(actualSlice);
- if (_viewColorLayerImagePanel->IsVisible()==true){
- _viewColorLayerImage->onThreshold();
- }
- }
-
+ } // if _viewThresholdImage
updateInstantOutlines();
updateInstantImageData();
updateInstantAxes();
-void wxContourMainFrame :: updateInstantOutlines()
+void wxContourMainFrame::updateInstantOutlines()
{
_theViewPanel->removeSceneContours();
_theViewPanel->addNameWrapperToScene();
//}
}
-int wxContourMainFrame::getNamesWrappingSize(){
+int wxContourMainFrame::getNamesWrappingSize()
+{
return kernelManager->getNamesWrappingSize();
}
-std::string wxContourMainFrame::getNameWrapping(int i){
+
+std::string wxContourMainFrame::getNameWrapping(int i)
+{
return kernelManager->getNameWrapping(i);
}
_instantPanel->getInstant(inst);
vtkImageData* img = kernelManager->getImageAtInstant(inst);
- if(img!=NULL){
+ if(img!=NULL)
+ {
_theViewPanel->changeImage(img);
showAxis(false);
}else{
int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
_theViewPanel->setImageSlice(z);
- }
+ } // if img
}
void wxContourMainFrame::updateInstantAxes()
void wxContourMainFrame::onCopy(){
std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
-
std::vector<int> tempVector;
_instantPanel->getInstant( tempVector );
_performingOperation->reset();
_performingOperation->setKeyNamesOperationElems( currentSelection );
}
-void wxContourMainFrame::onPaste(){
-
-
+void wxContourMainFrame::onPaste()
+{
char theStartCommand = _performingOperation->getStartCommand();
if ( theStartCommand == COPY )
{
}
}
}
-void wxContourMainFrame::onUndo(){
+
+void wxContourMainFrame::onUndo()
+{
std::string filename;
if(kernelManager->onUndoSaveFile(filename)){
saveFileWithContours(filename);
_theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
}
-//EED04
-void wxContourMainFrame ::loadState(std::string filename){
-
+void wxContourMainFrame ::loadState(std::string filename)
+{
deleteAllContours();
onLoadContours(filename,false);
-
- /* EED Borrame
- char tmp[255];
- FILE *pFile=fopen(filename.c_str(),"r+");
-
- fscanf(pFile,"%s",tmp); // --CreaContour--
-
- fscanf(pFile,"%s",tmp); // Version
- fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
-
- deleteAllContours();
-
- loadContours(pFile, false);
- loadContours(pFile, true);
-
- fclose(pFile);
- */
-}
-
-
-//EED03
-/*EED Borrame
-void wxContourMainFrame::loadContours( FILE *pFile, bool staticContour )
-{
- char tmp[255];
-
- if (staticContour==false)
- {
- fscanf(pFile,"%s",tmp); // ImageDimensions
- fscanf(pFile,"%s",tmp); // X
- fscanf(pFile,"%s",tmp); // Y
- fscanf(pFile,"%s",tmp); // Z
-
- fscanf(pFile,"%s",tmp); // ImageSpacing
- fscanf(pFile,"%s",tmp); // X
- fscanf(pFile,"%s",tmp); // Y
- fscanf(pFile,"%s",tmp); // Z
- }
-
- fscanf(pFile,"%s",tmp); // NumberOfContours
- fscanf(pFile,"%s",tmp); // ##
- int numberOfContours = atoi(tmp);
-
- std::vector<int> instantVector;
- int typeContourModel;
- manualBaseModel *manModelContour;
- int typeView;
-
- int i;
- for (i=0;i<numberOfContours;i++)
- {
- instantVector.clear();
- fscanf(pFile,"%s",tmp); // Instant
- fscanf(pFile,"%s",tmp); // 1
- instantVector.push_back( atoi(tmp) );
- fscanf(pFile,"%s",tmp); // 2
- instantVector.push_back( atoi(tmp) );
- fscanf(pFile,"%s",tmp); // 3
- instantVector.push_back( atoi(tmp) );
- fscanf(pFile,"%s",tmp); // 4
- instantVector.push_back( atoi(tmp) );
- fscanf(pFile,"%s",tmp); // 5
- instantVector.push_back( atoi(tmp) );
- fscanf(pFile,"%s",tmp); // 6
- instantVector.push_back( atoi(tmp) );
-
- fscanf(pFile,"%s",tmp); // TypeContourModel
- fscanf(pFile,"%s",tmp); // ##
- typeContourModel = atoi(tmp);
-
- manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
- manModelContour->Open(pFile);
-
- fscanf(pFile,"%s",tmp); // TypeView
- fscanf(pFile,"%s",tmp); // ##
- typeView = atoi(tmp);
-
- std::string theName;
- theName = kernelManager->createOutline( manModelContour, instantVector );
- bool addedModel = theName.compare("") != 0;
- if( addedModel )
- {
- double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
- _theViewPanel->getSpacing(spc);
- //Adding the manualContourControler to interface objects structure
- //Adding the manualViewContour to interface objects structure
- //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
- _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
- }
-
- if (staticContour==true)
- {
- Instant instant(&instantVector);
- kernelManager->changeContourOfManager( theName , &instant );
- }
- }// for numberOfContours
}
-*/
void wxContourMainFrame::onLoad()
if(GetFileLocation().empty())
{
//------------------------------------------------------------------------------------------------------------
+//EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
+#if wxMAJOR_VERSION <= 2
wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
+#else
+ wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
+#endif
if (dialog.ShowModal() == wxID_OK)
{
fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
}
+void wxContourMainFrame::SetZForAllContours(int pz)
+{
+ //-- Normal Contours
+ std::vector< std::string > lstNameThings;
+ int i,sizeLstNameThings;
+ int ii,sizeLstPoints;
+
+ lstNameThings = kernelManager->GetLstNameThings();
+ sizeLstNameThings = lstNameThings.size();
+ for (i=0 ; i<sizeLstNameThings ; i++)
+ {
+printf("EED wxContourMainFrame::SetZForAllContours contour=%d \n", i );
+ manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
+ sizeLstPoints = manualModel->GetSizeLstPoints();
+ for (ii=0 ; ii<sizeLstPoints ; ii++)
+ {
+ manualModel->GetManualPoint(ii)->SetPointZ(-900);
+ }// for ii list of points
+ }// for i list of Things
+
+ //-- Static Contours
+
+ lstNameThings = kernelManager->GetLstNameThingsStatic();
+ sizeLstNameThings = lstNameThings.size();
+ for (i=0 ; i<sizeLstNameThings ; i++)
+ {
+ manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
+ sizeLstPoints = manualModel->GetSizeLstPoints();
+ for (ii=0 ; ii<sizeLstPoints ; ii++)
+ {
+ manualModel->GetManualPoint(ii)->SetPointZ(-900);
+ }// for ii list of points
+ }// for i list of static things
+}
+
void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
{
char tmp[255];
char tmpD[255];
-
FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
-
-
//CMRU 03-09-09- ----------------------------------------------------------------------------------------------
if(pFile != NULL)
{
fscanf(pFileData,"%s",tmpD); // NumberOfContours
fscanf(pFileData,"%s",tmpD); // #
}
-
fscanf(pFile,"%s",tmp); // --CreaContour--
-
fscanf(pFile,"%s",tmp); // Version
fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
std::string version(tmp);
-
//AD:02-06-09
_tmpReadFileTypeOfTransformation=-1;
if (version=="1.0.3")
readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
openContours(pFile,pFileData,false);
openContours(pFile,pFileData,true); //Load StaticContours
- }
-
+ }
if (version=="1.0.2")
{
//EED001
- readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
+ readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
openContours(pFile,pFileData,false);
- readDimSpc(pFile,false); // DimSpc interactive OFF
- openContours(pFile,pFileData,true); //Load StaticContours
+ readDimSpc(pFile,false); // DimSpc interactive OFF
+ openContours(pFile,pFileData,true); // Load StaticContours
+ SetZForAllContours(-900);
}
-
//AD:02-06-09
else if (version=="1.0.1")
{
if(pFileData != NULL)
{
fclose(pFileData);
- }
+ } // if
}
_theViewPanel->getSceneManager()->removeSceneContours();
changeInstant();
-
}
-
-void wxContourMainFrame::onImport(){
+void wxContourMainFrame::onImport()
+{
std::string filename, filenamecontours;
+//EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
+#if wxMAJOR_VERSION <= 2
wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
-
+#else
+ wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
+#endif
if (dialog.ShowModal() == wxID_OK)
{
filename = dialog.GetPath().mb_str();
if(filenamecontours.compare("") != 0){
onLoadContours(filenamecontours,true);
- }
-
- }
+ } // if
+ } // if
}
-void wxContourMainFrame::onTest(){
+
+void wxContourMainFrame::onTest()
+{
std::string filename, filenamecontours;
+//EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
+#if wxMAJOR_VERSION <= 2
wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
+#else
+ wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
+#endif
if (dialog.ShowModal() == wxID_OK)
{
filename = dialog.GetPath().mb_str();
std::cout << "This is the filename: " << filename << std::endl;
- }
+ } // if
}
if(GetFileLocation().empty())
{
//------------------------------------------------------------------------------------------------------------
+//EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
+#if wxMAJOR_VERSION <= 2
wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
+#else
+ wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
+#endif
if (dialog.ShowModal() == wxID_OK)
{
std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
//------------------------------------------------------------------------------------------------------------
+
+// EED 2017-05-30
+ double spc[3];
+ spc[0]=1;
+ spc[1]=1;
+ spc[2]=1;
+
for (i=0 ; i<sizeLstNameThings ; i++)
{
//CMRU 03-09-09-----------------------------------------------------------------------------------------------
manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
- double sizeInPixel = manualModel ->GetPathSize();
+
+// EED 2017-05-30
+// double sizeInPixel = manualModel ->GetPathSize( );
+ double sizeInPixel = manualModel ->GetPathSize( spc );
+
double realContourSize = sizeInPixel*_onePixelSize;
manualModel ->SetRealSize(realContourSize);
//------------------------------------------------------------------------------------------------------------
//Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
{
- wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160));
+ wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
}
-void wxContourMainFrame::RefreshInterface(){
+void wxContourMainFrame::RefreshInterface()
+{
changeInstant();
_theViewPanel->RefreshInterface();
//wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
//wxvtk2dbaseview->Refresh();
}
-vtkImageData* wxContourMainFrame::getImageData(){
+vtkImageData* wxContourMainFrame::getImageData()
+{
return _theViewPanel->getImageData();
}
printf("EED wxContourMainFrame::SegmentationOneSliceITK Skypping this code. Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1 \n ");
/*EED 17 sept 2010
- >>>>>>>>>>> Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1
+ > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1
typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
thresholder->SetInput( geodesicActiveContour->GetOutput() );
connector2->SetInput( thresholder->GetOutput() );
-<<<<<<<<<<<<<<<<<<<
+< - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < -
*/
vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
- cntVTK->SetInput( idata );
-
cntVTK->SetNumberOfContours( 1 );
cntVTK->SetValue( 0, 255 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ cntVTK->SetInput( idata );
cntVTK->Update( );
cntVTK->UpdateInformation();
+#else
+ cntVTK->SetInputData( idata );
+#endif
vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
cpd->SetInput( cntVTK->GetOutput( ) );
cpd->Update( );
cpd->UpdateInformation();
+#else
+ cpd->SetInputData( cntVTK->GetOutput( ) );
+#endif
+
vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
conn->SetExtractionModeToLargestRegion( );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
conn->SetInput( cpd->GetOutput( ) );
conn->Update( );
conn->UpdateInformation();
+#else
+ conn->SetInputData( cpd->GetOutput( ) );
+#endif
+
vtkStripper* vtkstripper = vtkStripper::New( );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
vtkstripper->SetInput( conn->GetOutput() );
vtkstripper->Update();
vtkstripper->UpdateInformation();
+#else
+ vtkstripper->SetInputData( conn->GetOutput() );
+ cntVTK->Update();
+#endif
vtkPolyData* polyDataResult = cntVTK->GetOutput();
//std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
polyDataResult->Update( );
polyDataResult->UpdateInformation();
+#else
+ // ..
+#endif
//EED
/*
{
vecXo.push_back(p[0]);
vecYo.push_back(p[1]);
- }
- else
- {
- vecX.push_back( p[0] );
- myfile <<p[0]<<","<<p[1]<<"\n";
- //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
- //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
- //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
- vecY.push_back( p[1] );
- vecZ.push_back( 900 );
- xAct=x;
- yAct=y;
- }
+ } else {
+ vecX.push_back( p[0] );
+ myfile <<p[0]<<","<<p[1]<<"\n";
+ //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+ //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+ //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+ vecY.push_back( p[1] );
+//EED 2017-12-16
+ vecZ.push_back( -900 );
+ xAct = x;
+ yAct = y;
+ } // if xAct
}
vecX.push_back(vecXo.back());
//std::cout<<" x Siguiente "<<vecXo.back();
vecXo.pop_back();
- vecZ.push_back( 900 );
+//EED 2017-12-16
+ vecZ.push_back( -900 );
}
while(!vecYo.empty())
{
{
int typeofcontour = 1;
//--Extracting Contour
- //vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
vtkImageData *imagedata = getImageData();
-// double *range = imagedata->GetScalarRange();
-// double thr = 1;
vtkImageReslice *imageReslice = vtkImageReslice::New();
//EED
-// double spc[3];
-// imagedata->GetSpacing(spc);
-// x = x*spc[0];
-// y = y*spc[1];
-// z = z*spc[3];
+ double spc[3];
+ imagedata->GetSpacing(spc);
+ x = x*spc[0];
+ y = y*spc[1];
+ z = z;
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
imageReslice->SetInput( imagedata );
+#else
+ imageReslice->SetInputData( imagedata );
+#endif
imageReslice->SetInformationInput(imagedata);
imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
- imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
imageReslice->SetOutputDimensionality(2);
imageReslice->SetInterpolationModeToLinear();
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ // ..
+#else
+ imageReslice->Update();
+#endif
+
imagedata = imageReslice->GetOutput();
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
imagedata->Update();
imagedata->UpdateInformation();
+#else
+ // ..
+#endif
vtkContourFilter* cntVTK = vtkContourFilter::New( );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
cntVTK->SetInput( imagedata );
+#else
+ cntVTK->SetInputData( imagedata );
+#endif
cntVTK->SetNumberOfContours( 1 );
//cntVTK->SetValue( 0, vmin );
cntVTK->UpdateInformation();
vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
cpd->SetInput( cntVTK->GetOutput( ) );
+#else
+ cpd->SetInputData( cntVTK->GetOutput( ) );
+#endif
cpd->ConvertLinesToPointsOff( );
cpd->Update( );
cpd->UpdateInformation();
vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
- conn->SetExtractionModeToClosestPointRegion( );
+
+// conn->SetExtractionModeToPointSeededRegions();
+// conn->SetExtractionModeToCellSeededRegions();
+// conn->SetExtractionModeToSpecifiedRegions();
+// conn->SetExtractionModeToLargestRegion();
+// conn->SetExtractionModeToAllRegions();
+
+ conn->SetExtractionModeToClosestPointRegion();
+
//conn->SetMaxRecursionDepth( 3000 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
conn->SetInput( cpd->GetOutput( ) );
+#else
+ conn->SetInputData( cpd->GetOutput( ) );
+#endif
conn->SetClosestPoint( x, y, 0 );
conn->Update( );
conn->UpdateInformation();
vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
cpd2->SetInput( conn->GetOutput( ) );
+#else
+ cpd2->SetInputData( conn->GetOutput( ) );
+#endif
cpd2->Update();
cpd2->UpdateInformation();
vtkStripper* vtkstripper = vtkStripper::New( );
+vtkstripper->SetJoinContiguousSegments(true);
+ vtkstripper->SetMaximumLength(20000);
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
vtkstripper->SetInput( cpd2->GetOutput() );
+#else
+ vtkstripper->SetInputData( cpd2->GetOutput() );
+// vtkstripper->SetInputData( cntVTK->GetOutput() );
+
+#endif
vtkstripper->Update();
vtkstripper->UpdateInformation();
vtkPolyData* polyDataResult = vtkstripper->GetOutput();
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
polyDataResult->Update( );
polyDataResult->UpdateInformation();
+#else
+ //...
+#endif
/* EED
ofstream myfile;
polyDataResult->GetLines()->Print(myfile);
myfile.close();
*/
-
- cntVTK -> Delete();
- cpd2 -> Delete();
- cpd -> Delete();
- conn -> Delete();
-
+ cntVTK -> Delete();
+ cpd2 -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
//--Calculating control points
-
std::vector<double> vecX;
std::vector<double> vecY;
std::vector<double> vecZ;
-
std::vector<double> vecCtrlPointX;
std::vector<double> vecCtrlPointY;
std::vector<double> vecCtrlPointZ;
+printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
- double *p;
- int ii,size=polyDataResult->GetNumberOfPoints();
- int id;
- for (ii=1;ii<=size;ii++)
- {
- id = polyDataResult->GetLines()->GetData()->GetValue(ii);
- p = polyDataResult->GetPoint(id);
-// double x=p[0];
-// double y=p[1];
- vecX.push_back( p[0] );
- vecY.push_back( p[1] );
- vecZ.push_back( 900 );
-// vecZ.push_back( p[2] );
- }
+int numberOfPointsInCell;
+int numberOfcells=polyDataResult->GetNumberOfCells();
+for (int jj=0; jj<numberOfcells ; jj++)
+{
+ vtkCell* vtkcell = polyDataResult->GetCell( jj );
+ numberOfPointsInCell=vtkcell->GetNumberOfPoints();
+ printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d points=%d \n",jj,numberOfPointsInCell );
+}// for jj
+printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
- ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
- extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
-//PROOFS
- /*if (methodRadiobox->GetSelection()==0){
- extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- if (methodRadiobox->GetSelection()==1){
- extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- if (methodRadiobox->GetSelection()==2){
- extractcontrolpoints2d->SetSamplingControlPoints( sampling );
- extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }*/
- if (method==0){
- extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- else if (method==1){
- extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
- else if (method==2){
- extractcontrolpoints2d->SetSamplingControlPoints( sampling );
- extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
- }
+ if (polyDataResult->GetNumberOfCells()>0)
+ {
+ double *p;
+ printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
+ vtkCell* vtkcell = polyDataResult->GetCell( 0 );
+ printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
+ // int ii,size=polyDataResult->GetNumberOfPoints();
+ int ii,size=vtkcell->GetNumberOfPoints();
+ printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
+ int id;
+ for (ii=1;ii<=size;ii++)
+ {
+ // id = polyDataResult->GetLines()->GetData()->GetValue(ii);
+ // p = polyDataResult->GetPoint(id);
+ p = vtkcell->GetPoints()->GetPoint(ii);
- //--Adding contour to the system
+ printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d px=%f py=%f\n",ii,id, p[0],p[1]);
+ // double x=p[0];
+ // double y=p[1];
+ vecX.push_back( p[0] );
+ vecY.push_back( p[1] );
+ //EED 2017-12-16
+ vecZ.push_back( -900 );
+ // vecZ.push_back( p[2] );
+ }
- std::vector<int> actualInstantVector;
- _instantPanel->getInstant( actualInstantVector );
- actualInstantVector[1]=z;
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
- int j,sizeCtrPt = vecCtrlPointX.size();
- manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
- manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
- if (sizeCtrPt>=3){
- for (j=0 ; j<sizeCtrPt ; j++)
+ //PROOFS
+ /*if (methodRadiobox->GetSelection()==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }*/
+
+ if (method==0)
{
- manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
- } // for
- std::string theName;
- //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
- theName = kernelManager->createOutline( manModelContour, actualInstantVector );
- bool addedModel = theName.compare("") != 0;
- if( addedModel )
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ } else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ } else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+
+ //--Adding contour to the system
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+ manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
+ manModelContour->SetLabel2( std::to_string(z) );
+ if (sizeCtrPt>=3)
{
- double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
- _theViewPanel->getSpacing(spc);
- //Adding the manualContourControler to interface objects structure
- //Adding the manualViewContour to interface objects structure
- //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
- _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
- //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
- } // if addedModel
- } // if sizeCtrPt
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+ } // if NumberOfCells > 0
+
+printf("EED wxContourMainFrame::SegmentationOneSlice End\n");
}
-int wxContourMainFrame::GetImageDataSizeZ(){
+
+int wxContourMainFrame::GetImageDataSizeZ()
+{
return _theViewPanel->GetImageDataSizeZ();
}
-void wxContourMainFrame::GetImageDataRange(double *range){
+void wxContourMainFrame::GetImageDataRange(double *range)
+{
_theViewPanel->GetImageDataRange(range);
}
-void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
+void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
wxBusyCursor wait;
- int x = _theViewPanel->GetX();
- int y = _theViewPanel->GetY();
- int z;
- double porcent;
- wxString tmpString;
- double totalZ = maxZ-minZ+1;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z;
+ double porcent;
+ wxString tmpString;
+ double totalZ = maxZ-minZ+1;
for( z=minZ ; z<=maxZ ; z++ )
{
porcent = 100.0* (z-minZ)/totalZ;
return _theViewPanel->getWindowLevel();
}
-void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
+void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
+{
_theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
RefreshInterface();
}
-void wxContourMainFrame::onInterpolation(bool interpolate){
+void wxContourMainFrame::onInterpolation(bool interpolate)
+{
_theViewPanel->onInterpolation(interpolate);
RefreshInterface();
}
-void wxContourMainFrame::onChangeInstant(std::string name,int actual){
- _instantPanel->setConceptValue( name, actual );
+void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
+{
+ _theViewPanel->onBeforeAfterContour(before,after);
+ RefreshInterface();
}
+void wxContourMainFrame::onJumpSlice(int step, int shift)
+{
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int ss = abs(step);
+ int pos = tempVector[1];
+ int maxZ = interfMainPanel::getInstance()->GetImageDataSizeZ();
+ pos=(pos/ss)*ss+step+shift;
+ if ((pos>=0) && (pos<maxZ))
+ {
+ tempVector[1]=pos;
+ _instantPanel->setInstant( tempVector );
+ RefreshInterface();
+ } // if pos
+}
-void wxContourMainFrame::resetAppend(){
- kernelManager->resetAppend();
+void wxContourMainFrame::onShowTextContour(bool show)
+{
+ _theViewPanel->onShowTextContour(show);
+ RefreshInterface();
+}
+void wxContourMainFrame::onChangeInstant(std::string name,int actual)
+{
+ _instantPanel->setConceptValue( name, actual );
}
+void wxContourMainFrame::resetAppend()
+{
+ kernelManager->resetAppend();
+}
-void wxContourMainFrame::onSpreadAdd(){
+void wxContourMainFrame::onSpreadAdd()
+{
std::vector<double> vecX;
std::vector<double> vecY;
std::vector<double> vecZ;
}
-void wxContourMainFrame::onSpreadAddAll(){
+void wxContourMainFrame::onSpreadAddAll()
+{
//EED02
std::vector<int> tempVector;
_instantPanel->getInstant( tempVector );
}
-void wxContourMainFrame::onSpreadGo(int type){
+void wxContourMainFrame::onSpreadGo(int type)
+{
//JCP 20-10-08 Undo redo implementation
saveState();
//JCP 20-10-08 Undo redo implementation
//RefreshInterface();
}
-void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
-
+void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
+{
+ _instantPanel->getInstant( tempVector );
}
-std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
+std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
+{
std::vector<int> tempVector;
_instantPanel->getInstant(tempVector);
//Asignation of slide number should be different ex by name
void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
{
-//EED01Juillet2009 GenerateContourExtractData();
wxString tempString;
int maxContourGroup = 0;
std::vector<int> tempVector;
_instantPanel->getInstant( tempVector );
-//EED01Juillet2009 vtkImageData *imagedata = _theViewPanel->getImageData();
-// int sizeZ = _theViewPanel->GetImageDataSizeZ();
int z;
int ii,sizeLstContourThings;
totalZ = maxZ-minZ+1;
-//EED01Juillet2009 _contourextractdata->SetImage( imagedata);
_contourextractdata->InitVolumeStatistics();
void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
{
wxBusyCursor wait;
-//EED01Juillet2009 GenerateContourExtractData();
//int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
_contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
std::vector<int> tempVector;
_instantPanel->getInstant( tempVector );
-//EED01Juillet2009 vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
int z;
int ii,sizeLstContourThings;
maxZ = sizeZ;//_mbarrange->GetEnd();
totalZ = maxZ-minZ+1;
-//EED01Juillet2009 _contourextractdata->SetImage( imagedata);
// For each slice..
for ( z=0 ; z<sizeZ ; z++)
void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
wxBusyCursor wait;
-//EED01Juillet2009 GenerateContourExtractData();
//int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
if (typeContourGroup==3)
int z;
int ii,sizeLstContourThings;
-
double totalZ;
double porcent;
totalZ = maxZ-minZ;
-//EED01Juillet2009 _contourextractdata->SetImage( imagedata);
// cleanning image before range
for (z=0; z<minZ; z++){
}
-void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
+std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
{
+ std::string result="";
+ if ( image->GetScalarType()==VTK_CHAR )
+ {
+ result="CHAR";
+ } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
+ result="UCHAR";
+ } else if ( image->GetScalarType()==VTK_FLOAT ){
+ result="FLOAT";
+ } else if ( image->GetScalarType()==VTK_DOUBLE ){
+ result="DOUBLE";
+ } else if ( image->GetScalarType()==VTK_INT ){
+ result="INT";
+ } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
+ result="UINT";
+ } else if ( image->GetScalarType()==VTK_SHORT ){
+ result="SHORT";
+ } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
+ result="USHORT";
+ } else if ( image->GetScalarType()==VTK_LONG ){
+ result="LONG";
+ } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
+ result="ULONG";
+ }
+ return result;
+}
+void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
+{
+ std::string stringType;
double spc[3];
kernelManager->GetSpacing(spc,0); // returns the spacing of the first image
-
- std::string temp = directory + "/" + namefile + "-image-Value.mhd";
+ stringType = GetStringTypeImage(value);
+ std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
wxString filename = crea::std2wx(temp);
// Image Value
vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
valueChInfo->SetInput(value);
+#else
+ valueChInfo->SetInputData(value);
+#endif
valueChInfo->SetSpacingScale(spc);
+ valueChInfo->Update();
vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
writerValueImage->SetInput( valueChInfo->GetOutput() );
+#else
+ writerValueImage->SetInputData( valueChInfo->GetOutput() );
+#endif
writerValueImage->SetFileName( (const char *)filename.mb_str() );
writerValueImage->SetFileDimensionality( 3 );
writerValueImage->SetCompression(false);
writerValueImage->Write( );
// Image Mask
- temp = directory + "/" + namefile + "-image-Mask.mhd";
+ stringType = GetStringTypeImage(mask);
+ temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
// LG 14/01/09 : using crea
filename = crea::std2wx(temp);
vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
maskChInfo->SetInput(mask);
+#else
+ maskChInfo->SetInputData(mask);
+#endif
maskChInfo->SetSpacingScale(spc);
+ maskChInfo->Update();
vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
writerMaskImage->SetInput( maskChInfo->GetOutput() );
+#else
+ writerMaskImage->SetInputData( maskChInfo->GetOutput() );
+#endif
+
writerMaskImage->SetFileName( (const char *)filename.mb_str() );
writerMaskImage->SetFileDimensionality( 3 );
writerMaskImage->SetCompression(false);
wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
{
-
+
if (_viewMaskImagePanel==NULL)
{
_contourextractdata = new ContourExtractData(true);
// _theViewPanel->getImageData()->GetScalarRange(range);
//int min = (int)floor (range[0]);
//int max = (int)ceil (range[1]);
+
+//EED 2017-12-17
int min = 254;
int max = 256;
- _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , 0);
+
+ _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1, 0);
_viewMaskImage = new ThresholdImageView();
- _viewMaskImage->SetImage(_contourextractdata->GetVtkImageMaskResult() );
+ _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
_viewMaskImage->SetminMaxValue( min, max);
_viewMaskImage->SetBaseColor( 0,0,1 );
+
+
+ std::vector<int> colorbarposition;
+ colorbarposition.push_back( -999 );
+ colorbarposition.push_back( -999 );
+ _viewMaskImage->SetColorBarPosition( colorbarposition );
+ double spc[3];
+ _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
+ _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
+
_viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
_viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
+ _viewMaskImage->onThresholdChangeOpacity( 25 );
}
return _viewMaskImagePanel;
}
_theViewPanel->getImageData()->GetScalarRange(range);
int min = (int)floor (range[0]);
int max = (int)ceil (range[1]);
- _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max , 1);
- _viewColorLayerImage = new ColorLayerImageView();
-// _viewColorLayerImage->SetImage( _theViewPanel->getImageData() );
- _viewColorLayerImage->SetImage( NULL );
- _viewColorLayerImagePanel->SetColorLayerImageView( _viewColorLayerImage );
- _viewColorLayerImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
+ _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
+ _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
+ // std::vector<double> range = bbGetInputlstRangeForColorBar();
+ // clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
+ std::vector<int> colorbarposition;
+ colorbarposition.push_back( 50 );
+ colorbarposition.push_back( 105 );
+ _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
+ // std::vector<double> base_color;
+ // _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
+ // std::vector<double> grey_level_boundaries;
+ // clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
+ std::vector<double> transparence_level_boundaries;
+ transparence_level_boundaries.push_back(0);
+ _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
+ _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
+// _viewColorLayerImagePanel->SetFittingMode( 3 );
}
return _viewColorLayerImagePanel;
}
_theViewPanel->getImageData()->GetScalarRange(range);
int min = (int)floor (range[0]);
int max = (int)ceil (range[1]);
- _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max , 1);
+ int start= (max+min)/2 - (max-min)*0.25;
+ int end= (max+min)/2 + (max-min)*0.25;
+ _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
_viewThresholdImage = new ThresholdImageView();
+ _viewThresholdImage->SetminMaxValue(start,end);
_viewThresholdImage->SetImage( _theViewPanel->getImageData() );
- _viewThresholdImage->SetminMaxValue( min, max);
+ std::vector<int> colorbarposition;
+ colorbarposition.push_back( 10 );
+ colorbarposition.push_back( 105 );
+ _viewThresholdImage->SetColorBarPosition( colorbarposition );
+ double spc[3];
+ _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
+ _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
+
_viewThresholdImage->SetBaseColor( 1,0,0 );
_viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
_viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
+ _viewThresholdImage->onThresholdChangeOpacity( 25 );
+ RefreshInterface();
}
return _viewThresholdImagePanel;
}
std::string cloneName = currentSelection [0];
manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
- contourSize = manualModel-> GetPathSize();
+
+// EED 2017-05-30
+// contourSize = manualModel->GetPathSize();
+ double spc[3];
+ spc[0]=1;
+ spc[1]=1;
+ spc[2]=1;
+ contourSize = manualModel->GetPathSize( spc );
}
return contourSize;
}
+
manualBaseModel * wxContourMainFrame::getContour ()
{
std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
}
void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
{
- double sizeInPixel = manualModel ->GetPathSize();
+// EED 2017-05-30
+// double sizeInPixel = manualModel ->GetPathSize( );
+ double spc[3];
+ spc[0]=1; // ????
+ spc[1]=1; // ????
+ spc[2]=1; // ????
+ double sizeInPixel = manualModel ->GetPathSize( spc );
+
double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
- double realContourSize = sizeInPixel*onePixelRealSize;
+ double realContourSize = sizeInPixel*onePixelRealSize;
manualModel ->SetRealSize(realContourSize);
}
std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
}
//------------------------------------------------------------------------------------------------------------
+
+
+
+
+
+
+
+
+void wxContourMainFrame::FlipSelectedContours(int flipDirection)
+{
+ FlipLstOfContours(
+ (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
+ flipDirection
+ );
+
+}
+
+void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
+{
+ FlipLstOfContours(
+ (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
+ flipDirection
+ );
+}
+
+void wxContourMainFrame::FlipAllContours(int flipDirection)
+{
+ FlipLstOfContours(
+ kernelManager->GetLstNameThings() ,
+ flipDirection
+ );
+}
+
+void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
+{
+ int ext[6];
+ getImageData()->GetExtent(ext);
+ int sizeX = ext[1]-ext[0];
+ int sizeY = ext[3]-ext[2];
+
+
+ int i,sizeLstNameThings;
+ int ii,sizeLstPoints;
+
+ sizeLstNameThings = lstNameThings.size();
+ for (i=0 ; i<sizeLstNameThings ; i++)
+ {
+ printf("EED wxContourMainFrame::FlipAllContours contour=%d \n", i );
+ manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
+ if (flipDirection==0)
+ {
+ manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
+ } else {
+ manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
+ }
+ }// for i list of Things
+
+ //-- Static Contours
+
+ lstNameThings = kernelManager->GetLstNameThingsStatic();
+ sizeLstNameThings = lstNameThings.size();
+ for (i=0 ; i<sizeLstNameThings ; i++)
+ {
+ manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
+ if (flipDirection==0)
+ {
+ manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
+ } else {
+ manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
+ }
+ }// for i list of static things
+}
+
+void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
+{
+ printf("EED wxContourMainFrame::FlipContours( %d , %d ) \n",typeContourFlip, flipDirection );
+
+ saveState();
+
+ if (typeContourFlip==0) //
+ {
+ FlipSelectedContours(flipDirection);
+ }
+
+ if (typeContourFlip==1) //
+ {
+ FlipActualSliceContours(flipDirection);
+ }
+
+ if (typeContourFlip==2) //
+ {
+ FlipAllContours(flipDirection);
+ }
+ RefreshInterface();
+}
+
+
+void wxContourMainFrame::SetXY(int x, int y)
+{
+ _theViewPanel->SetXY(x,y);
+}
+
+
+
+
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff