//----------------------------------------------------------------------------------------------------------------
#include "wxContourMainFrame.h"
+
+
//----------------------------------------------------------------------------------------------------------------
// Includes
//----------------------------------------------------------------------------------------------------------------
#include "ConceptDataWrap.h"
#include <manualContour.h>
-#include "ImageSourceThing.h"
-#include "vtkImageData.h"
-
+//#include "ImageSourceThing.h"
+//#include "wxContour_ActionCommandsID.h"
+//#include "OutlineModelBuilder.h"
+//#include "wxContourEventHandler.h"
+#include <creaWx.h>
//----------------------------------------------------------------------------------------------------------------
// Class implementation
//------------------------------------------------------------------------------------------------------------
// Constructors & Destructors
//------------------------------------------------------------------------------------------------------------
+
+wxContourMainFrame* wxContourMainFrame:: instance = NULL;
+char wxContourMainFrame::COPY = 'C';
wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
//: wxPanel(parent, id, title, pos, size, style)
m_mgr.SetManagedWindow(this);
_creatingContoursActive = false;
_theViewPanel = NULL;
- _modelManager = NULL;
+// _modelManager = NULL;
+ _instantPanel = NULL;
+// _buttonsBar = NULL;
+// _gridPanel = NULL;
+// _drawToolsPanel = NULL;
+// _operationsToolsPanel = NULL;
+ //_autoFormsPanel = NULL;
+// _standardToolsPanel = NULL;
+// _editionToolsPanel = NULL;
+// _listViewPanel = NULL;
+// _sceneManager = NULL;
+ //_actualInstant = NULL;
+ _numberOfVariablesStatistics = 6+1;
+
+ _refLineControl = NULL;
+ _refLineModel = NULL;
+ _refLineView = NULL;
+ _thresholdActor = NULL;
+ _actorPresent = false;
+
+ // set up default notebook style
+// m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
+// m_notebook_theme = 0;
+ //wxContour_ActionCommandsID a;
+
+ }
+
+ wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
+ : wxPanel(parent, id, pos, size, style)
+ {
+ m_mgr.SetManagedWindow(this);
+ _creatingContoursActive = false;
+ _theViewPanel = NULL;
+
_instantPanel = NULL;
- _buttonsBar = NULL;
- _gridPanel = NULL;
- _drawToolsPanel = NULL;
- _operationsToolsPanel = NULL;
- _autoFormsPanel = NULL;
- _standardToolsPanel = NULL;
- _editionToolsPanel = NULL;
- _listViewPanel = NULL;
- _sceneManager = NULL;
- _actualInstant = NULL;
+ _refLineControl = NULL;
+ _refLineModel = NULL;
+ _refLineView = NULL;
+ _thresholdActor = NULL;
+ _actorPresent = false;
// set up default notebook style
m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
m_notebook_theme = 0;
+ //wxContour_ActionCommandsID a;
+ _numberOfVariablesStatistics = 7;
+
+ _datadir = datadir;
+
+
+ inredo = 0;
+ inundo = 0;
+
+ _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
+ _performingOperation = new PerformingOperation();
+
+ if(images.size() > 0)
+ {
+ this->setVectImages(images);
+ }
+
+}
+
+void wxContourMainFrame::setVectImages( std::vector<vtkImageData*> images ){
+
+ #if defined(__GNUC__)
+ std::string str_home(getenv("HOME"));
+ #elif defined(_WIN32)
+ std::string str_home(getenv("USERPROFILE"));
+ #endif
+ std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
+
+ std::vector<std::string> conceptNameVect;
+ std::vector<int> conceptSizeVect;
+
+ notebook = this->createNotebook();
+
+
+ kernelManager = new KernelManagerContour( images , _datadir+"/data/" , strCreaContourDataTmp );
+
+
+ _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
+ _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
+
+//-------------------------------------------------------------
+ kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
+ _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
+
+
+ double val = _theViewPanel->getCurrentDeep();
+ _instantPanel->setConceptValue( "Axe Depth", (int)val );
+ //JCP _instantPanel->setConceptValue("time", num de imagenes);
+ ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
+ //*******************changeInstant();
+ _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
+
+ this->configurePanels( );
+
+}
+
+
+ wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
+ if(instance == NULL){
+ instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
+ }
+ return instance;
+ }
+
+ std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
+ {
+ return kernelManager->getVectImages();
+ }
+
+ wxContourMainFrame* wxContourMainFrame :: getInstance()
+ {
+ return instance;
+ }
+
+ void wxContourMainFrame :: resetInstance()
+ {
+ delete instance;
+ instance = NULL;
}
wxContourMainFrame :: ~wxContourMainFrame()
{
- m_mgr.UnInit();
- //El problema al cerrar la aplicacion puede estar asociado
- //a que wxAUINotebook esta en la aplicacion
- //principal (wxContourGUIExample)tambien
-//EED???? delete _theViewPanel;
-//EED???? delete _instantPanel;
-//EED???? delete _buttonsBar;
-//EED???? delete _actualInstant;
-//EED???? delete _sceneManager;
+
+ _pannew->Close();
+ interfMainPanel::resetInstance();
+ //_pannew->Destroy();
+ //delete _pannew;
+
+ m_mgr.UnInit();
+ //delete m_mgr;
+
+ //El problema al cerrar la aplicacion puede estar asociado
+ //a que wxAUINotebook esta en la aplicacion
+ //principal (wxContourGUIExample)tambien
+ //EED???? delete _theViewPanel;
+ //EED???? delete _instantPanel;
+ //EED???? delete _buttonsBar;
+ //EED???? delete _actualInstant;
+ //EED???? delete _sceneManager;
}
//------------------------------------------------------------------------------------------------------------
// Creational and initialization methods
//------------------------------------------------------------------------------------------------------------
- bool wxContourMainFrame :: configurePanels(wxAuiNotebook* theNoteBook)
+ bool wxContourMainFrame :: configurePanels( )
{
bool configured = _theViewPanel!=NULL;
configured &= _theViewPanel!=NULL;
if( _theViewPanel!=NULL )
{
- theNoteBook->AddPage( _theViewPanel, wxT(" View ") );
+ notebook->AddPage( _theViewPanel, wxT(" View ") );
m_mgr.Update();
}
if( configured )
{
- theNoteBook->AddPage( _instantPanel, wxT("Instant Page") );
+ notebook->AddPage( _instantPanel, wxT("Instant Page") );
m_mgr.Update();
}
- m_mgr.AddPane(theNoteBook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
+ m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
m_mgr.Update();
- configured &= _buttonsBar!=NULL;
- if( _buttonsBar!=NULL )
- {
- m_mgr.AddPane(_buttonsBar, wxAuiPaneInfo().
- Name(wxT("TB")).Caption(wxT("Buttons Bar")).
- ToolbarPane().Top().
- LeftDockable( ).RightDockable( false ).CloseButton(false));
- m_mgr.Update();
- }
- //CreateStatusBar();
-
+
SetMinSize(wxSize(300,300));
m_mgr.Update();
return configured;
}
- void wxContourMainFrame :: setNotebook( wxAuiNotebook * noteBook )
- {
+ bool wxContourMainFrame::addNewPanel(wxPanel* panel)
+ {
+ bool configured = panel!=NULL;
+ configured &= panel!=NULL;
+
+ if( configured )
+ {
+ notebook->AddPage( panel, wxT(" Viewer "), true );
+ m_mgr.Update();
+ }
+ return configured;
}
//------------------------------------------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------------
- void wxContourMainFrame :: setViewPanel( wxContourViewPanel * theViewPanel )
- {
- _theViewPanel = theViewPanel;
- }
-
+
void wxContourMainFrame :: setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel )
{
_instantPanel = theInstantChooserPanel;
}
- void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
+// void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
+// {
+// _buttonsBar = theButtonsBar;
+// }
+
+// void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
+// {
+// _gridPanel = theGridPanel;
+// }
+
+// void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
+// {
+// _drawToolsPanel = theDrawToolsPanel;
+// }
+
+// void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
+// {
+// _operationsToolsPanel = theOperationsToolsPanel;
+// }
+
+// void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
+// {
+// _autoFormsPanel = theAutoFormsPanel;
+// }
+
+// void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
+// {
+// _standardToolsPanel= theStandardToolsPanel;
+// }
+
+// void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
+// {
+// _editionToolsPanel = theEditionToolsPanel;
+// }
+
+// void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
+// {
+// _listViewPanel = theListViewPanel;
+// }
+
+
+
+void wxContourMainFrame::onCreateContourSpline( ){
+
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ createContour( 1 );
+
+}
+void wxContourMainFrame::onCreateContourRectangle( ){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ createContour( 2 );
+}
+void wxContourMainFrame::onCreateContourCircle( ){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ createContour( 3 );
+}
+
+void wxContourMainFrame::onCreateContourLine( ){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ createContour( 6 );
+}
+
+//------------------------------------------------------------------------------------------------------------
+
+void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
+{
+ //Creating the manualContourModel and including in the model
+ manualContourModel * manModelContour = factoryManualContourModel(panel );
+
+ std::vector<int> instantVector;
+ _instantPanel->getInstant( instantVector );
+ std::string theName = kernelManager->createOutline(manModelContour, instantVector);
+
+ /*std::vector<int> instantVector;
+ _instantPanel->getInstant( instantVector );
+ std::string theName;
+ theName= _modelManager->createOutline( manModelContour, instantVector );*/
+ bool addedModel = theName.compare("") != 0;//??
+
+ if( addedModel )
{
- _buttonsBar = theButtonsBar;
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
}
+}
+void wxContourMainFrame :: createContour( int typeContour )
+{
+ //Creating the manualContourModel and including in the model
+ manualContourModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
+
- void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
+ std::vector<int> instantVector;
+ _instantPanel->getInstant( instantVector );
+ std::string theName = kernelManager->createOutline(manModelContour, instantVector);
+
+ /*std::vector<int> instantVector;
+ _instantPanel->getInstant( instantVector );
+ std::string theName;
+ theName= _modelManager->createOutline( manModelContour, instantVector );*/
+ bool addedModel = theName.compare("") != 0;//??
+ if( addedModel )
{
- _gridPanel = theGridPanel;
- }
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
+ }
+
+}
+manualContourModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
+
+ manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
+ manualContourModel *manModelContour=NULL;
+ manModelContour = manModelContourBullEye;
+ if (panel!=NULL){
+ int iCrown,sizeCrowns,iSector,sizeSectors;
+ double radioA,radioB,ang,angDelta ;
+ sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
+ for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
+ {
+ sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
+ radioB = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
+ if (iCrown==sizeCrowns-1)
+ {
+ radioA = 0;
+ } else {
+ radioA = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
+ }
+ radioA=radioA/100.0;
+ radioB=radioB/100.0;
+ for ( iSector=0 ; iSector<sizeSectors ; iSector++ )
+ {
+ ang = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
+ angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
+ manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
+ } // for iSector
+ } // for iCrown
+ } // if _panelBullEyeOptions
+
+ return manModelContour;
+}
+void wxContourMainFrame :: saveState(){
+
+ std::string temp = kernelManager->saveState();
+ saveFileWithContours(temp);
+}
+
+void wxContourMainFrame::onDeleteContour(){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ std::vector<std::string> lstKeyNameToBeErase;
+ lstKeyNameToBeErase = _theViewPanel->getSceneManager()->getSelectedObjects();
+ deleteContours( lstKeyNameToBeErase );
+/*JCP 19 - 11 - 08
+ int i,size=_sceneManager->getSelectedObjects().size();
+ for(i=0;i<size;i++)
+ {
+ std::string keyName = _sceneManager->getSelectedObjects()[i];
+ int ispartofstaticlist = this->_modelManager->IsPartOfStaticList( keyName );
+ if ( ispartofstaticlist>=0 )
+ {
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ Instant instant(&tempVector);
+ this->_modelManager->ChangeContourOfList(keyName, &instant);
+ }
+ }
+
+ std::vector<std::string> lstKeyName;
+ std::vector<std::string> lstKeyNameActualSlice;
+ std::vector<std::string> lstKeyNameToBeErase;
+
+ lstKeyNameToBeErase = _sceneManager->getSelectedObjects();
+ lstKeyNameActualSlice = _sceneManager->GetlstContoursNameActualSlice();
+ int k,kSize=lstKeyNameToBeErase.size();
+ int j,jSize=lstKeyNameActualSlice.size();
+ bool ok;
+ for (k=0;k<kSize; k++)
+ {
+ ok=false;
+ for (j=0;j<jSize; j++)
+ {
+ if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
+ {
+ ok=true;
+ }
+ } // for j
+ if (ok==true)
+ {
+ lstKeyName.push_back( lstKeyNameToBeErase[k] );
+ } // if ok
+ } // for k
- void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
+ deleteContours( lstKeyName );
+JCP 19 - 11 - 08*/
+}
+
+void wxContourMainFrame :: deleteContours( std::vector<std::string> keyNamesVector )
+{
+ int i,size=keyNamesVector.size();
+ for (i=0;i<size;i++)
{
- _drawToolsPanel = theDrawToolsPanel;
+ deleteContour( keyNamesVector[i] );
}
+}
+
+void wxContourMainFrame :: deleteContour( std::string theKeyName ){
+ /*
+ manualContourModel * cModel;
+ manualViewBaseContour * cViewer;
+ manualContourBaseControler * cControler;
+
+ ContourWrap_ViewControl *conwrapviewControl = _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
+ cControler = conwrapviewControl->getControler();*/
+
+ //JCP 21 - 11 - 2008
+ bool isedit = _theViewPanel->isEditableCControler(theKeyName);
+ bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
+
+ if (isedit && ispartofstaticlst)
+ {
+ _theViewPanel->removeFromScene(theKeyName);
+
+ kernelManager->deleteCModel(theKeyName);
+ //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
+ //cViewer = conwrapviewControl->getViewer();
+ //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
+ //cControler* conwrapviewControl->getControler();
+//EED Borrame
+//FILE *ff = fopen("c:/temp/wxVtkBaseView_SceneManagerStadistics.txt","a+");
+//fprintf(ff,"EED wxContourEventHandler::deleteContours() \n" );
+//fprintf(ff," %s %p\n",keyNamesVector[i].c_str(), cControler );
+//fclose(ff);
+ // delete cModel;
+ // delete cViewer;
+ // delete cControler;
+ } // if editable
+//JCP 21 - 11 - 08
+}
+
+void wxContourMainFrame::onDeleteContoursActSlice(){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
+}
+void wxContourMainFrame::onDeleteAllContours(){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ deleteAllContours();
+}
+void wxContourMainFrame::deleteAllContours(){
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+//JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
+// the values in GetStart and GetEnd will then not be initialize also.
+// We use instead the values given when initializing the _deletepanel.
+
+ //int minZ = _mbarrangeDeleteAll->GetStart();
+ //int maxZ = _mbarrangeDeleteAll->GetEnd();
+ int minZ, maxZ;
+
+ minZ = 0;
+ maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
+
+//JCP --08-09-2008
+
+ _theViewPanel->getSceneManager()->removeSceneContours( );
+ _theViewPanel->getSceneManager()->removeAllOutlines();
+ kernelManager->removeAllOutlines();
+//JCP --08-09-2008
+ /*
+ if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
+ {
+ _theViewPanel->getSceneManager()->removeSceneContours( );
+ _modelManager->removeAllOutlines();
+ _theViewPanel->getSceneManager()->removeAllOutlines();
+
+ } else {
+ for ( z=minZ ; z<=maxZ ; z++)
+ {
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
+
+ sizeLstContourThings = lstContourThings.size();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ deleteContour( (*contourthing)->getName() );
+ } //for ii
+ }// for z
+ } // if
+JCP --08-09-2008 */
+}
+
+void wxContourMainFrame::setConceptValue( std::string name, int value ){
+ _instantPanel->setConceptValue(name, value);
+}
+
+ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
+ return _instantPanel->getLastConceptData();
+}
+bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
+ return _instantPanel->getIfConceptCheckedAt( name, pos );
+}
+
+void wxContourMainFrame::changeInstant()
+{
+ std::vector<int> instantVect;
+ _instantPanel->getInstant( instantVect );
+// Instant * theInstant = new Instant ( &instantVect );
+
+ //Setting the actual instant
+ //_actualInstant = theInstant;
+
+ kernelManager->setInstant(instantVect);
+ //_modelManager->setInstant( _actualInstant );
+
+ updateInstantOutlines();
+ updateInstantImageData();
+ updateInstantAxes();
+ updateActor();
+}
+
+
+void wxContourMainFrame :: updateInstantOutlines()
+{
+ _theViewPanel->removeSceneContours();
+ _theViewPanel->addNameWrapperToScene();
+
+ //for( int i=0; i<size; i++)
+ //{
+ // _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
+ //}
+}
+
+int wxContourMainFrame::getNamesWrappingSize(){
+ return kernelManager->getNamesWrappingSize();
+}
+std::string wxContourMainFrame::getNameWrapping(int i){
+ return kernelManager->getNameWrapping(i);
+}
- void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
- {
- _operationsToolsPanel = theOperationsToolsPanel;
+void wxContourMainFrame::updateInstantImageData()
+{
+ std::vector<int> inst;
+ _instantPanel->getInstant(inst);
+
+ vtkImageData* img = kernelManager->getImageAtInstant(inst);
+ if(img!=NULL){
+ _theViewPanel->changeImage(img);
+ showAxis(false);
+ }else{
+ int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
+ _theViewPanel->setImageSlice(z);
}
+}
+
+void wxContourMainFrame::updateInstantAxes()
+{
+}
+
+void wxContourMainFrame :: updateActor()
+{
+ if (_actorPresent)
+ {
+ int minMax[2];
+ _pannew->onThresholdInstantChange(minMax);
+
+ int z = _theViewPanel->GetZ();
+
+ vtkImageData * img = getImageData();
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+
+ imageReslice->SetInput( img );
+ imageReslice->SetInformationInput(img);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ img = imageReslice->GetOutput();
+ img->Update();
+ img->UpdateInformation();
+
+ wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+
+ double range[2];
+ img->GetScalarRange(range);
+
+ int min = floor (range[0]);
+ int max = ceil (range[1]);
+
+ //Lookup Table
+ vtkLookupTable *lookup = vtkLookupTable::New();
+ lookup->SetNumberOfTableValues(max+1);
+ lookup->SetTableRange(range);
+ lookup->SetAlphaRange(0, 1);
+ lookup->SetValueRange(0, 1);
+ lookup->SetSaturationRange(0, 0);
+ lookup->SetRampToLinear( );
+
+ //Assign a fake color for the upper image, and set the white as transparent
+ int i;
+ int minVal = minMax[0];
+ int maxVal = minMax[1];
+
+ for(i = min; i <= max; i++)
+ {
+ if( i >= minVal && i <= maxVal )
+ {
+ lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
+ }
+ else if( i >= min && i < minVal )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else if( i > maxVal && i < max )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ }
+
+ lookup->Build( );
+
+ vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
+ mapperImage->SetLookupTable( lookup );
+ mapperImage->SetInput( img );
+ //mapperImage->SetOutputFormatToRGBA( );
+
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ }
+}
- void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
+void wxContourMainFrame::onChangeDeep(int val){
+ _instantPanel->setConceptValue( "Axe Depth", (int)val );
+ changeInstant();
+}
+
+
+void wxContourMainFrame::onCopy(){
+ std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->reset();
+ _performingOperation->setStartCommand( COPY );
+ _performingOperation->setStartOperationInstantVector( tempVector );
+ _performingOperation->setKeyNamesOperationElems( currentSelection );
+}
+
+void wxContourMainFrame::onPaste(){
+
+
+ char theStartCommand = _performingOperation->getStartCommand();
+ if ( theStartCommand == COPY )
{
- _autoFormsPanel = theAutoFormsPanel;
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->setEndOperationInstantVector ( tempVector );
+ std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
+ int i,size = elems.size();
+ for( i=0; i<size; i++ )
+ {
+ createCopyContourOf( elems[i], tempVector, i>0 );
+ }
+ }
+}
+void wxContourMainFrame::onUndo(){
+ std::string filename;
+ if(kernelManager->onUndoSaveFile(filename)){
+ saveFileWithContours(filename);
+ }
+ if(kernelManager->onUndo(filename)){
+ loadState(filename);
}
+}
+void wxContourMainFrame::onRedo(){
+ std::string filename;
+ if(kernelManager->onRedo(filename)){
+ loadState(filename);
+ }
+
+}
+void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
+{
+ std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
+ manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
+ _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
+}
+
+///AD: 03-09 Copy the object and apply the given transformation
+void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
+{
+ std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
+ manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
+
+ manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
+ manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
- void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
+ double pnt1X = refPoint1->GetX();
+ double pnt1Y = refPoint1->GetY();
+// double pnt1Z = refPoint1->GetZ();
+ double pnt2X = refPoint2->GetX();
+ double pnt2Y = refPoint2->GetY();
+// double pnt2Z = refPoint2->GetZ();
+
+ double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
+ vtkTransform *t = vtkTransform::New();
+
+ t->PostMultiply();
+ t->Identity();
+ t->Translate(-pnt1X, -pnt1Y, 0);
+ t->RotateZ(-angle);
+ t->Scale(-1,1,1);
+ t->RotateZ(angle);
+ t->Translate(pnt1X, pnt1Y, 0);
+ t->Update();
+
+ int i,size=manualModel->GetSizeLstPoints();
+ for (i=0;i<size;i++)
{
- _standardToolsPanel= theStandardToolsPanel;
+ manualPoint * mp = manualModel->GetManualPoint(i);
+ float vecIn[3];
+ float vecOut[3];
+ vecIn[0]=mp->GetX();
+ vecIn[1]=mp->GetY();
+ vecIn[2]=mp->GetZ();
+ t->TransformPoint( vecIn, vecOut );
+ mp->SetPointX( vecOut[0] );
+ mp->SetPointY( vecOut[1] );
+ mp->SetPointZ( vecOut[2] );
+ }
+
+ _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
+}
+
+void wxContourMainFrame ::loadState(std::string filename){
+ char tmp[255];
+ FILE *pFile=fopen(filename.c_str(),"r+");
+
+ fscanf(pFile,"%s",tmp); // --CreaContour--
+
+ fscanf(pFile,"%s",tmp); // Version
+ fscanf(pFile,"%s",tmp); // 1.0.1
+ std::string version(tmp);
+
+ deleteAllContours();
+
+ openContours(pFile,false);
+ if (version!="1.0.0"){
+ openContours(pFile,true);
}
- void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
+ fclose(pFile);
+
+ //_theViewPanel->getSceneManager()->removeSceneContours();
+ //changeInstant();
+
+}
+
+void wxContourMainFrame::onLoad(){
+ char tmp[255];
+ wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
+ if (dialog.ShowModal() == wxID_OK)
+ {
+ std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
+ FILE *pFile=fopen(fileNameContourROI.c_str(),"r+");
+
+ fscanf(pFile,"%s",tmp); // --CreaContour--
+
+ fscanf(pFile,"%s",tmp); // Version
+ fscanf(pFile,"%s",tmp); // 1.0.1
+ std::string version(tmp);
+
+ openContours(pFile,false);
+ if (version!="1.0.0"){
+ openContours(pFile,true);
+ }
+// _theViewPanel->getSceneManager()->openFileWithContours(ff);
+
+ fclose(pFile);
+ }
+ _theViewPanel->getSceneManager()->removeSceneContours();
+ changeInstant();
+}
+void wxContourMainFrame::onSave(){
+ wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
+ if (dialog.ShowModal() == wxID_OK)
{
- _editionToolsPanel = theEditionToolsPanel;
+ std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
+ kernelManager->setCurrentFileName(fileNameContourROI);
+ saveFileWithContours( fileNameContourROI );
}
+}
+void wxContourMainFrame::saveFileWithContours( std::string filename ){
- void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
+ FILE *pFile=fopen(filename.c_str(),"w+");
+ std::vector< std::string > lstNameThings;
+ int i,sizeLstNameThings;
+
+ fprintf(pFile,"--CreaContour--\n");
+ fprintf(pFile,"Version %s\n", "1.0.1" );
+
+ // Normal Contours
+ lstNameThings = kernelManager->GetLstNameThings();
+ sizeLstNameThings = lstNameThings.size();
+ fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
+ for (i=0 ; i<sizeLstNameThings ; i++)
+ {
+ kernelManager->SaveThingName( pFile, lstNameThings[i] );
+ _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
+ }// for i
+
+ //-- Contours Statics
+ lstNameThings = kernelManager->GetLstNameThingsStatic();
+ sizeLstNameThings = lstNameThings.size();
+ fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
+ for (i=0 ; i<sizeLstNameThings ; i++)
+ {
+ kernelManager->SaveThingName( pFile, lstNameThings[i] );
+ _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
+ }// for i
+ fclose(pFile);
+}
+
+void wxContourMainFrame::openContours( FILE *pFile, bool staticContour ){
+ char tmp[255];
+ fscanf(pFile,"%s",tmp); // NumberOfContours
+ fscanf(pFile,"%s",tmp); // ##
+ int numberOfContours = atoi(tmp);
+
+ std::vector<int> instantVector;
+ int typeContourModel;
+ manualContourModel *manModelContour;
+ int typeView;
+
+ int i;
+ for (i=0;i<numberOfContours;i++)
{
- _listViewPanel = theListViewPanel;
+ instantVector.clear();
+ fscanf(pFile,"%s",tmp); // Instant
+
+ fscanf(pFile,"%s",tmp); // 1
+ instantVector.push_back( atoi(tmp) );
+ fscanf(pFile,"%s",tmp); // 2
+ instantVector.push_back( atoi(tmp) );
+ fscanf(pFile,"%s",tmp); // 3
+ instantVector.push_back( atoi(tmp) );
+ fscanf(pFile,"%s",tmp); // 4
+ instantVector.push_back( atoi(tmp) );
+ fscanf(pFile,"%s",tmp); // 5
+ instantVector.push_back( atoi(tmp) );
+ fscanf(pFile,"%s",tmp); // 6
+ instantVector.push_back( atoi(tmp) );
+
+
+ fscanf(pFile,"%s",tmp); // TypeContourModel
+ fscanf(pFile,"%s",tmp); // ##
+ typeContourModel = atoi(tmp);
+
+ manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
+ manModelContour->Open(pFile);
+
+ fscanf(pFile,"%s",tmp); // TypeView
+ fscanf(pFile,"%s",tmp); // ##
+ typeView = atoi(tmp);
+
+
+// if (typeView==1)
+// {
+// }
+
+
+ std::string theName;
+ theName = kernelManager->createOutline( manModelContour, instantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
+ }
+
+ if (staticContour==true)
+ {
+ Instant instant(&instantVector);
+ kernelManager->changeContourOfManager( theName , &instant );
+ }
+
+ }// for numberOfContours
+
+}
+
+void wxContourMainFrame::RefreshInterface(){
+ changeInstant();
+ _theViewPanel->RefreshInterface();
+ //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
+ //wxvtk2dbaseview->Refresh();
+}
+
+vtkImageData* wxContourMainFrame::getImageData(){
+ return _theViewPanel->getImageData();
+}
+
+void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
+{
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z = _theViewPanel->GetZ();
+ SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
+ RefreshInterface();
+}
+
+void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
+{
+
+ int typeofcontour = 1;
+ //Image Data
+ vtkImageData *imagedata = getImageData();
+
+ //Tipo de pixeles a utilizar internamente en ITK
+ typedef float InternalPixelType;
+ const unsigned int Dimension = 2;
+ typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
+
+ //Tipo de pixeles de salida 1
+ typedef unsigned char OutputPixelType;
+ typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
+
+ //Tipo de pixeles de salida 2
+ typedef unsigned short OutputPixelType2;
+ typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
+
+ //DefiniciÛn del thresholder
+ typedef itk::BinaryThresholdImageFilter<
+ InternalImageType,
+ OutputImageType > ThresholdingFilterType;
+
+ //DefiniciÛn del primer filtro de conversiÛn de pixeles
+ typedef itk::CastImageFilter<
+ OutputImageType, OutputImageType2 > CastFilterType;
+
+ //DefiniciÛn del segundo tipo de conversiÛn de pixeles
+ typedef itk::CastImageFilter<
+ OutputImageType2, InternalImageType > CastFilterType2;
+
+ //Tercer tipo de conversiÛn
+ typedef itk::RescaleIntensityImageFilter<
+ InternalImageType,
+ OutputImageType > CastFilterType3;
+
+ //Cuarto tipo de conversiÛn
+ typedef itk::RescaleIntensityImageFilter<
+ OutputImageType,
+ OutputImageType > CastFilterType4;
+
+ ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
+
+ thresholder->SetLowerThreshold( 0.0 );
+ thresholder->SetUpperThreshold( 128 );
+
+ thresholder->SetOutsideValue( 255 );
+ thresholder->SetInsideValue( 0 );
+
+ //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
+ typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
+ typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
+ typedef itk::ImageFileWriter< OutputImageType > WriterType;
+
+ ConnectorType::Pointer connector= ConnectorType::New();
+ ConnectorType2::Pointer connector2= ConnectorType2::New();
+
+
+ CastFilterType::Pointer filter=CastFilterType::New();
+ CastFilterType2::Pointer filter2=CastFilterType2::New();
+
+ connector->SetInput( imagedata );
+ filter2->SetInput(connector->GetOutput());
+
+ typedef itk::CurvatureAnisotropicDiffusionImageFilter<
+ InternalImageType,
+ InternalImageType > SmoothingFilterType;
+
+ SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
+
+ typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
+ InternalImageType,
+ InternalImageType > GradientFilterType;
+
+ typedef itk::SigmoidImageFilter<
+ InternalImageType,
+ InternalImageType > SigmoidFilterType;
+
+ GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
+
+ SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
+
+ sigmoid->SetOutputMinimum( 0.0 );
+ sigmoid->SetOutputMaximum( 255.0 );
+
+
+ typedef itk::FastMarchingImageFilter<
+ InternalImageType,
+ InternalImageType > FastMarchingFilterType;
+
+
+ FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
+
+ typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
+ InternalImageType > GeodesicActiveContourFilterType;
+ GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
+ GeodesicActiveContourFilterType::New();
+
+ typedef itk::ZeroCrossingImageFilter<
+ InternalImageType,
+ InternalImageType > ZeroCrossingFilterType;
+ZeroCrossingFilterType::Pointer zeroCrossing =
+ ZeroCrossingFilterType::New();
+
+const double propagationScaling = atof( crea::wx2std(prop).c_str() );
+
+ geodesicActiveContour->SetPropagationScaling( propagationScaling );
+ geodesicActiveContour->SetCurvatureScaling( 1.0 );
+ geodesicActiveContour->SetAdvectionScaling( 1.0 );
+
+ geodesicActiveContour->SetMaximumRMSError( 0.02 );
+ int it=atoi( crea::wx2std(iter).c_str() );
+ geodesicActiveContour->SetNumberOfIterations( it );
+
+ smoothing->SetInput( filter2->GetOutput() );
+ gradientMagnitude->SetInput( smoothing->GetOutput() );
+ sigmoid->SetInput( gradientMagnitude->GetOutput() );
+ fastMarching->SetInput( sigmoid->GetOutput() );
+ geodesicActiveContour->SetInput( fastMarching->GetOutput() );
+ geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
+
+ zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
+ //thresholder->SetInput( zeroCrossing->GetOutput() );
+ thresholder->SetInput( geodesicActiveContour->GetOutput() );
+ connector2->SetInput( thresholder->GetOutput() );
+
+
+ smoothing->SetTimeStep( 0.125 );
+ smoothing->SetNumberOfIterations( 5 );
+ smoothing->SetConductanceParameter( 9.0 );
+
+
+ const double sigma = atof( crea::wx2std(sigm).c_str() );
+ gradientMagnitude->SetSigma( sigma );
+
+ const double alpha = atof( crea::wx2std(alf).c_str() );
+ const double beta = atof( crea::wx2std(bet).c_str() );
+
+ sigmoid->SetAlpha( alpha );
+ sigmoid->SetBeta( beta );
+
+ typedef FastMarchingFilterType::NodeContainer NodeContainer;
+ typedef FastMarchingFilterType::NodeType NodeType;
+
+ NodeContainer::Pointer seeds = NodeContainer::New();
+
+ InternalImageType::IndexType seedPosition;
+ seedPosition[0] = x;
+ seedPosition[1] = y;
+
+ const double initialDistance = atof( crea::wx2std(distanc).c_str() );
+
+ NodeType node;
+
+ const double seedValue = - initialDistance;
+
+ node.SetValue( seedValue );
+ node.SetIndex( seedPosition );
+
+ seeds->Initialize();
+ seeds->InsertElement( 0, node );
+
+ fastMarching->SetTrialPoints( seeds );
+
+ fastMarching->SetSpeedConstant( 1.0 );
+
+ fastMarching->SetOutputSize(
+ connector->GetOutput()->GetBufferedRegion().GetSize() );
+
+ fastMarching->SetStoppingValue( 800 );
+ try
+ {
+
+ connector2->Update();
+ vtkImageData *idata = connector2->GetOutput();
+
+ vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
+
+ cntVTK->SetInput( idata );
+
+ cntVTK->SetNumberOfContours( 1 );
+ cntVTK->SetValue( 0, 255 );
+ cntVTK->Update( );
+ cntVTK->UpdateInformation();
+
+ vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
+ cpd->SetInput( cntVTK->GetOutput( ) );
+ cpd->Update( );
+ cpd->UpdateInformation();
+
+ vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
+ conn->SetExtractionModeToLargestRegion( );
+ conn->SetInput( cpd->GetOutput( ) );
+ conn->Update( );
+ conn->UpdateInformation();
+
+ vtkStripper* vtkstripper = vtkStripper::New( );
+ vtkstripper->SetInput( conn->GetOutput() );
+ vtkstripper->Update();
+ vtkstripper->UpdateInformation();
+
+
+ vtkPolyData* polyDataResult = cntVTK->GetOutput();
+ std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
+ polyDataResult->Update( );
+ polyDataResult->UpdateInformation();
+
+//EED
+ /*
+ofstream myfile;
+myfile.open ("C:/Creatis/example.txt");
+myfile << "\n";
+polyDataResult->Print(myfile);
+myfile << "-------------------------------------\n";
+polyDataResult->GetLines()->Print(myfile);
+myfile.close();*/
+
+ cntVTK -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
+
+
+//--Calculating control points
+
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecXo;
+ std::vector<double> vecYo;
+ std::vector<double>::iterator vecXoi;
+ std::vector<double>::iterator vecYoi;
+ std::vector<double> vecZ;
+
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+
+
+ double *p;
+ double xAct=0;
+ double yAct=0;
+ int ii,size=polyDataResult->GetNumberOfPoints();
+ofstream myfile;
+myfile.open ("C:/Creatis/example2.txt");
+
+ size=polyDataResult->GetNumberOfPoints();
+ for (ii=0;ii<size;ii++)
+ {
+ if(ii==0)
+ {
+ xAct=x;
+ yAct=y;
+ }
+ p = polyDataResult->GetPoint(ii);
+ double x=p[0];
+ double y=p[1];
+ /*if(fabs(yAct-y)>20)
+ {
+ if((xAct-x)>1 || (xAct-x)<-1)
+ {
+ vecX.push_back( p[0] );
+ vecY.push_back( p[1] );
+ myfile <<p[0]<<","<<p[1]<<"\n";
+ std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+ std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+ std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+ vecZ.push_back( 900 );
+ xAct=x;
+ yAct=y;
+ }
+ else
+ {
+ vecXo.push_back(p[0]);
+ vecYo.push_back(p[1]);
+ }
+
+ }
+ else*/ if(fabs(xAct-x)>11)
+ {
+ vecXo.push_back(p[0]);
+ vecYo.push_back(p[1]);
+ }
+ else
+ {
+ vecX.push_back( p[0] );
+ myfile <<p[0]<<","<<p[1]<<"\n";
+ std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+ std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+ std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+ vecY.push_back( p[1] );
+ vecZ.push_back( 900 );
+ xAct=x;
+ yAct=y;
+ }
+
+
+ }
+
+ while(!vecXo.empty())
+ {
+ vecX.push_back(vecXo.back());
+ std::cout<<" x Siguiente "<<vecXo.back();
+ vecXo.pop_back();
+ vecZ.push_back( 900 );
+ }
+ while(!vecYo.empty())
+ {
+ vecY.push_back(vecYo.back());
+ vecYo.pop_back();
+ }
+ myfile.close();
+
+ /*for(int l=0;l<vecX.size();l++)
+ {
+ if(l==0)
+ {
+ vecXo.push_back(p[0]);
+ vecYo.push_back(p[1]);
+ }
+ else
+ {
+ if(vecXoi[l-1]==)
+ {
+ }
+ }
+
+ }*/
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+
+int method=2;
+ if (method==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( 15 );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ //--Adding contour to the system
+
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+
+ manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
+ if (sizeCtrPt>=3){
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+
+
+
+ WriterType::Pointer writer = WriterType::New();
+ CastFilterType3::Pointer caster = CastFilterType3::New();
+
+ caster->SetInput( gradientMagnitude->GetOutput() );
+ writer->SetInput( caster->GetOutput() );
+ writer->SetFileName("Gradient Magnitude.png");
+ caster->SetOutputMinimum( 0 );
+ caster->SetOutputMaximum( 255 );
+ writer->Update();
+
+ CastFilterType3::Pointer caster2 = CastFilterType3::New();
+ WriterType::Pointer writer2 = WriterType::New();
+
+ caster2->SetInput( sigmoid->GetOutput() );
+ writer2->SetInput( caster2->GetOutput() );
+ writer2->SetFileName("Sigmoid.png");
+ caster2->SetOutputMinimum( 0 );
+ caster2->SetOutputMaximum( 255 );
+ writer2->Update();
+
+ CastFilterType3::Pointer caster3 = CastFilterType3::New();
+ WriterType::Pointer writer3 = WriterType::New();
+
+ caster3->SetInput( fastMarching->GetOutput() );
+ writer3->SetInput( caster3->GetOutput() );
+ writer3->SetFileName("FastMarching.bmp");
+ caster3->SetOutputMinimum( 0 );
+ caster3->SetOutputMaximum( 255 );
+ writer3->Update();
+
+ CastFilterType3::Pointer caster4 = CastFilterType3::New();
+ WriterType::Pointer writer4 = WriterType::New();
+
+ caster4->SetInput( geodesicActiveContour->GetOutput() );
+ writer4->SetInput( caster4->GetOutput() );
+ writer4->SetFileName("GeodesicActiveContour.png");
+ caster4->SetOutputMinimum( 0 );
+ caster4->SetOutputMaximum( 255 );
+ writer4->Update();
+
+ CastFilterType3::Pointer caster5 = CastFilterType3::New();
+ WriterType::Pointer writer5 = WriterType::New();
+
+ caster5->SetInput( zeroCrossing->GetOutput() );
+ writer5->SetInput( caster5->GetOutput() );
+ writer5->SetFileName("ZeroCrossing.bmp");
+ caster5->SetOutputMinimum( 0 );
+ caster5->SetOutputMaximum( 255 );
+ writer5->Update();
+ }
+ catch( itk::ExceptionObject & excep )
+ {
+ std::cerr << "Exception caught !" << std::endl;
+ std::cerr << excep << std::endl;
+ }
+}
+
+void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
+
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z = _theViewPanel->GetZ();
+ SegmentationOneSlice( x,y,z,isovalue, sampling, method );
+ RefreshInterface();
+}
+
+
+void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
+{
+ int typeofcontour = 1;
+ //--Extracting Contour
+ //vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
+ vtkImageData *imagedata = getImageData();
+// double *range = imagedata->GetScalarRange();
+// double thr = 1;
+
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+//EED
+// double spc[3];
+// imagedata->GetSpacing(spc);
+// x = x*spc[0];
+// y = y*spc[1];
+// z = z*spc[3];
+
+ imageReslice->SetInput( imagedata );
+ imageReslice->SetInformationInput(imagedata);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ imagedata = imageReslice->GetOutput();
+ imagedata->Update();
+ imagedata->UpdateInformation();
+
+ vtkContourFilter* cntVTK = vtkContourFilter::New( );
+ cntVTK->SetInput( imagedata );
+
+ cntVTK->SetNumberOfContours( 1 );
+ //cntVTK->SetValue( 0, vmin );
+// cntVTK->SetValue( 0, (range[1]*thr/100) );
+ cntVTK->SetValue( 1, isovalue );
+// cntVTK->SetValue( 1, vmax );
+ cntVTK->Update( );
+ cntVTK->UpdateInformation();
+
+ vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
+ cpd->SetInput( cntVTK->GetOutput( ) );
+ cpd->ConvertLinesToPointsOff( );
+ cpd->Update( );
+ cpd->UpdateInformation();
+
+ vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
+ conn->SetExtractionModeToClosestPointRegion( );
+ //conn->SetMaxRecursionDepth( 3000 );
+
+ conn->SetInput( cpd->GetOutput( ) );
+
+ conn->SetClosestPoint( x, y, 0 );
+ conn->Update( );
+ conn->UpdateInformation();
+
+ vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
+ cpd2->SetInput( conn->GetOutput( ) );
+ cpd2->Update();
+ cpd2->UpdateInformation();
+
+ vtkStripper* vtkstripper = vtkStripper::New( );
+ vtkstripper->SetInput( cpd2->GetOutput() );
+ vtkstripper->Update();
+ vtkstripper->UpdateInformation();
+
+
+ vtkPolyData* polyDataResult = vtkstripper->GetOutput();
+
+ polyDataResult->Update( );
+ polyDataResult->UpdateInformation();
+
+/* EED
+ofstream myfile;
+myfile.open ("c:/temp/example.txt");
+myfile << "\n";
+polyDataResult->Print(myfile);
+myfile << "-------------------------------------\n";
+polyDataResult->GetLines()->Print(myfile);
+myfile.close();
+*/
+
+ cntVTK -> Delete();
+ cpd2 -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
+
+
+//--Calculating control points
+
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+
+
+ double *p;
+ int ii,size=polyDataResult->GetNumberOfPoints();
+ int id;
+ for (ii=1;ii<=size;ii++)
+ {
+ id = polyDataResult->GetLines()->GetData()->GetValue(ii);
+ p = polyDataResult->GetPoint(id);
+// double x=p[0];
+// double y=p[1];
+ vecX.push_back( p[0] );
+ vecY.push_back( p[1] );
+ vecZ.push_back( 900 );
+// vecZ.push_back( p[2] );
+ }
+
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+
+//PROOFS
+ /*if (methodRadiobox->GetSelection()==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }*/
+
+ if (method==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+
+ //--Adding contour to the system
+
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+ manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
+ if (sizeCtrPt>=3){
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+}
+int wxContourMainFrame::GetImageDataSizeZ(){
+ return _theViewPanel->GetImageDataSizeZ();
+}
+
+void wxContourMainFrame::GetImageDataRange(double *range){
+ _theViewPanel->GetImageDataRange(range);
+}
+
+void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z;
+ double porcent;
+ wxString tmpString;
+ double totalZ = maxZ-minZ+1;
+ for( z=minZ ; z<=maxZ ; z++ )
+ {
+ porcent = 100.0* (z-minZ)/totalZ;
+ tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
+ interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
+ //_staticTextSegmentation->SetLabel(tmpString);
+ SegmentationOneSlice( x,y,z,isovalue, sampling,method );
+ }
+ interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T(" "));
+ RefreshInterface();
+}
+
+
+//Creates a reference line to be used as the axis of the mirroring
+void wxContourMainFrame::referenceLine()
+{
+ if (_refLineControl==NULL)
+ {
+ wxBusyCursor wait;
+ double spc[3];
+
+ vtkImageData *vtkimagedata = _theViewPanel->getImageData();
+ vtkimagedata->GetSpacing(spc);
+
+ wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
+
+ _refLineControl = new manualLineControler();
+ _refLineModel = new manualContourModelLine();
+ _refLineView = new manualViewLine();
+ _refLineView->SetModel( _refLineModel );
+ _refLineView->SetWxVtkBaseView( viewer2D );
+ _refLineView->SetRange( 2 );
+ _refLineView->SetZ( 1200 );
+
+ _refLineView->SetSpacing(spc);
+
+ _refLineView->SetColorNormalContour(0, 0, 1);
+ _refLineView->SetColorEditContour(0, 0.5, 0.5);
+ _refLineView->SetWidthLine(4);
+
+ _refLineControl->SetModelView( _refLineModel , _refLineView );
+ viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
+ _refLineModel->SetCloseContour(false);
+ _refLineControl->CreateNewManualContour();
+
+ double z = _refLineControl->GetZ();
+ /*
+ _refLineControl->AddPoint(50,100,z);
+ _refLineControl->AddPoint(80,40,z);
+ _refLineControl->SetCompleteCreation(true);
+
+ _refLineModel->AddPoint(50,100,z);
+ _refLineModel->AddPoint(80,40,z);
+ _refLineModel->UpdateSpline();
+
+ _refLineView->UpdateViewPoint(0);
+ _refLineView->UpdateViewPoint(1);
+ */
+
+ _refLineControl->SetActive(true);
+ _refLineView->RefreshContour();
+ }
+}
+
+//Hides the referenceLine
+void wxContourMainFrame::refLineHide()
+{
+ if (_refLineControl!=NULL)
+ {
+ if (_refLineControl->GetActive())
+ {
+ _refLineView->RemoveCompleteContourActor();
+ _refLineControl->SetEditable(false);
+ _refLineControl->SetActive(false);
+
+ RefreshInterface();
+ }
+ }
+}
+
+//Shows the referenceLine
+void wxContourMainFrame::refLineShow()
+{
+ if (_refLineControl!=NULL)
+ {
+ if (_refLineControl->GetActive()==false)
+ {
+ wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
+
+ _refLineView->SetModel( _refLineModel );
+ _refLineView->SetWxVtkBaseView( viewer2D );
+ _refLineView->SetRange( 2 );
+ _refLineView->SetZ( 1200 );
+
+ _refLineControl->SetModelView( _refLineModel , _refLineView );
+ viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
+ _refLineControl->CreateNewManualContour();
+ _refLineControl->SetActive(true);
+ _refLineView->RefreshContour();
+
+ RefreshInterface();
+ }
+ }
+}
+
+void wxContourMainFrame::refLineChangeWidth(int width)
+{
+ _refLineView->SetWidthLine(width);
+ _refLineView->RefreshContour();
+
+ RefreshInterface();
+}
+
+
+void wxContourMainFrame::onMirror()
+{
+ //AD:02-09
+ std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
+ std::vector<std::string> filterCurrentSelection;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->reset();
+ _performingOperation->setStartCommand( COPY );
+ _performingOperation->setStartOperationInstantVector( tempVector );
+ _performingOperation->setKeyNamesOperationElems( currentSelection );
+
+ char theStartCommand = _performingOperation->getStartCommand();
+ if ( theStartCommand == COPY )
+ {
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->setEndOperationInstantVector ( tempVector );
+ std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
+ int i,size = elems.size();
+ for( i=0; i<size; i++ )
+ {
+ createMirrorContourOf( elems[i], tempVector, i>0 );
+ }
+ }
+
+ //deleteContour( _refName );
+ //_refName = "";
+}
+
+void wxContourMainFrame::onThreshold(int minVal, int maxVal)
+{
+ if (!_actorPresent)
+ {
+ int z = _theViewPanel->GetZ();
+
+ vtkImageData * img = getImageData();
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+
+ imageReslice->SetInput( img );
+ imageReslice->SetInformationInput(img);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ img = imageReslice->GetOutput();
+ img->Update();
+ img->UpdateInformation();
+
+ wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+
+ double range[2];
+ img->GetScalarRange(range);
+
+ int min = floor (range[0]);
+ int max = ceil (range[1]);
+
+ //Lookup Table
+ vtkLookupTable *lookup = vtkLookupTable::New();
+ lookup->SetNumberOfTableValues(max+1);
+ lookup->SetTableRange(range);
+ lookup->SetAlphaRange(0, 1);
+ lookup->SetValueRange(0, 1);
+ lookup->SetSaturationRange(0, 0);
+ lookup->SetRampToLinear( );
+
+ //Assign a fake color for the upper image, and set the white as transparent
+ int i;
+ for(i = min; i <= max; i++)
+ {
+ if( i >= minVal && i <= maxVal )
+ {
+ lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
+ }
+ else if( i >= min && i < minVal )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else if( i > maxVal && i < max )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ }
+
+ lookup->Build( );
+
+ vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
+ mapperImage->SetLookupTable( lookup );
+ mapperImage->SetInput( img );
+ //mapperImage->SetOutputFormatToRGBA( );
+
+ if (_thresholdActor==NULL)
+ {
+ _thresholdActor = vtkImageActor::New( );
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ _thresholdActor->SetOpacity( 0.6 );
+ _thresholdActor->InterpolateOn( );
+ }
+ else
+ {
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ }
+
+ baseView->GetRenderer()->AddActor( _thresholdActor );
+ _actorPresent = true;
+ }
+
+ RefreshInterface();
+/*
+ vtkImageViewer2* viewer = vtkImageViewer2::New();
+ viewer->SetInput( upperImageActor->GetInput() );
+ viewer->SetColorLevel((range[1]-range[0])/2);
+ viewer->SetColorWindow(range[1]);
+ viewer->GetRenderer()->AddActor( upperImageActor );
+ viewer->Render();
+*/
+
+}
+
+void wxContourMainFrame::onThresholdChange(int minVal, int maxVal)
+{
+ if (_actorPresent)
+ {
+ int z = _theViewPanel->GetZ();
+
+ vtkImageData * img = getImageData();
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+
+ imageReslice->SetInput( img );
+ imageReslice->SetInformationInput(img);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ img = imageReslice->GetOutput();
+ img->Update();
+ img->UpdateInformation();
+
+ wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+
+ double range[2];
+ img->GetScalarRange(range);
+
+ int min = floor (range[0]);
+ int max = ceil (range[1]);
+
+ //Lookup Table
+ vtkLookupTable *lookup = vtkLookupTable::New();
+ lookup->SetNumberOfTableValues(max+1);
+ lookup->SetTableRange(range);
+ lookup->SetAlphaRange(0, 1);
+ lookup->SetValueRange(0, 1);
+ lookup->SetSaturationRange(0, 0);
+ lookup->SetRampToLinear( );
+
+ //Assign a fake color for the upper image, and set the white as transparent
+ int i;
+ for(i = min; i <= max; i++)
+ {
+ if( i >= minVal && i <= maxVal )
+ {
+ lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
+ }
+ else if( i >= min && i < minVal )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else if( i > maxVal && i < max )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ }
+
+ lookup->Build( );
+
+ vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
+ mapperImage->SetLookupTable( lookup );
+ mapperImage->SetInput( img );
+ //mapperImage->SetOutputFormatToRGBA( );
+
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ }
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onThresholdInterpolation(bool interpolate)
+{
+ if (_thresholdActor!=NULL)
+ {
+ if (interpolate)
+ {
+ _thresholdActor->InterpolateOn( );
+ }
+
+ else
+ {
+ _thresholdActor->InterpolateOff( );
+ }
+
+ RefreshInterface();
+ }
+}
+
+void wxContourMainFrame::onThresholdChangeOpacity (int opacity)
+{
+ if (_actorPresent)
+ {
+ _thresholdActor->SetOpacity(opacity*0.1);
+ }
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onThresholdRemove()
+{
+ if (_actorPresent)
+ {
+ wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+ baseView->GetRenderer()->RemoveActor( _thresholdActor );
+ _actorPresent = false;
+ }
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::showAxis(bool show)
+{
+ _theViewPanel->SetVisibleAxis(show);
+ _theViewPanel->Refresh();
+}
+
+
+void wxContourMainFrame::onRigidPressed(){
+ std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
+ int elementsSelected = currentSelection.size();
+
+ if ( elementsSelected >= 1 ){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ Instant instant(&tempVector);
+
+ int i , size=currentSelection.size();
+ for ( i=0 ; i<size ; i++ )
+ {
+ kernelManager->changeContourOfManager(currentSelection[i], &instant);
+ } // i
+ }
+}
+
+void wxContourMainFrame::onWidthOfContour(double width){
+
+ _theViewPanel->removeSceneContours();
+ _theViewPanel->SetWidthContour(width);
+
+ //_theViewPanel->getSceneManager()->SetWidthContour( width );
+
+ RefreshInterface();
+}
+int wxContourMainFrame::getColorWindow(){
+ return _theViewPanel->getColorWindow();
+}
+int wxContourMainFrame::getWindowLevel(){
+ return _theViewPanel->getWindowLevel();
+}
+
+void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
+ _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onInterpolation(bool interpolate){
+ _theViewPanel->onInterpolation(interpolate);
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onChangeInstant(std::string name,int actual){
+ _instantPanel->setConceptValue( name, actual );
+}
+
+void wxContourMainFrame::resetAppend(){
+ kernelManager->resetAppend();
+
+}
+
+void wxContourMainFrame::onSpreadAdd(){
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+ _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
+
+ interfMainPanel::getInstance()->appendStringSpread(val);
+
+}
+
+void wxContourMainFrame::onSpreadGo(int type){
+
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+ double minZ,maxZ;
+ int z;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+// tempVector[1];
+
+ kernelManager->getMaxMinZ(&minZ,&maxZ);
+//JSTG_16-07-08_----------------------------------------------------------------
+ //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
+ kernelManager->CalculeSplinePropagation();
+
+ double totalZ = maxZ-minZ+1;
+ double porcent;
+ wxString tmpString;
+//--------------------------------------------------------------------
+ for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
+ {
+ porcent = 100.0* (z-minZ)/totalZ;
+ int numero = (int)(z-minZ+1)/(int)totalZ;
+ std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
+
+ interfMainPanel::getInstance()->setStringSpread(stringtemp);
+
+ int typeofcontour = 1;
+ std::string theName;
+ manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
+
+ if( manModelContour!=NULL ){
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ this->_theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
+ } // if addedModel
+ }
+ if(z > maxZ){
+ porcent = 100.0;
+ int numero = (int)(z-minZ+1)/(int)totalZ;
+ std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
+
+ interfMainPanel::getInstance()->setStringSpread(stringtemp);
+ }// for z
+ //RefreshInterface();
+}
+
+void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
+
+}
+
+std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
+ std::vector<int> tempVector;
+ _instantPanel->getInstant(tempVector);
+ //Asignation of slide number should be different ex by name
+ tempVector[1]=slide;
+ return kernelManager->getOutlinesNameAtInstant(tempVector);
+}
+
+void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ){
+ int maxContourGroup = 0;
+
+ ContourExtractData *contourextractdata = new ContourExtractData();
+
+ contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
+
+ std::vector<manualContourModel*> lstManConMod;
+ std::vector<manualContourModel*> lstManConModTmp;
+ std::vector<manualContourModel*> lstManConModExp;
+ std::vector<double> pLstValue;
+ std::vector<double> pLstValuePosX;
+ std::vector<double> pLstValuePosY;
+ std::vector<double> pLstValuePosZ;
+
+ int resultSize;
+ int resultGrayRangeCount;
+ double resultMin;
+ double resultMax;
+ double resultAverage;
+ double resultStandardeviation;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ vtkImageData *imagedata = _theViewPanel->getImageData();
+ int sizeZ = _theViewPanel->GetImageDataSizeZ();
+ int z;
+ int ii,sizeLstContourThings;
+
+
+ int minZ,maxZ;
+ double totalZ;
+ double porcent;
+ wxString tmpString;
+
+
+
+ if (selection==0 ) // actual slice
+ {
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int actualSlice = tempVector[1];
+ minZ = actualSlice;
+ maxZ = actualSlice;
+ }
+ else if (selection==2 ) // All slices
+ {
+ minZ = 0;
+ maxZ = sizeZ-1;
+ }
+ else if (selection==1 ) // slice range
+ {
+ minZ = minimumZ;
+ maxZ = maximumZ;
+ }
+
+
+ totalZ = maxZ-minZ+1;
+ contourextractdata->SetImage( imagedata);
+
+// For each slice..
+ for ( z=minZ ; z<=maxZ ; z++ )
+ {
+
+ porcent = 100.0* (z-minZ)/totalZ;
+ tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
+
+ interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
+ //_staticTextInformation->SetLabel(tmpString);
+
+ //Extraction data from contours of each slice
+ contourextractdata->SetZtoBeAnalys( z);
+
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
+ sizeLstContourThings = lstContourThings.size();
+
+ lstManConMod.clear();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ lstManConMod.push_back( (*contourthing)->getModel() );
+ }
+ lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
+
+
+ wxString tempString;
+ tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
+ interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
+ //_grid->SetRowLabelValue(z, tempString );
+//EED004
+ int iContourGroup,sizeContourGroup;
+ if (typeContourGroup==3) // contour separete
+ {
+ sizeContourGroup=lstManConModExp.size();
+ if ( maxContourGroup<sizeContourGroup )
+ {
+ maxContourGroup=sizeContourGroup;
+ }
+ } else { // contour AND OR XOR
+ sizeContourGroup=1;
+ maxContourGroup=1;
+ }
+
+ int tmpIntA;
+
+
+
+ for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
+ lstManConModTmp.clear();
+ if (typeContourGroup==3) // contour separete
+ {
+ lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
+ } else { // contour AND OR XOR
+ lstManConModTmp = lstManConModExp;
+ }
+
+ contourextractdata->SetLstManualContourModel( lstManConModTmp );
+
+ pLstValue.clear();
+ pLstValuePosX.clear();
+ pLstValuePosY.clear();
+ pLstValuePosZ.clear();
+ contourextractdata->GetValuesInsideCrown( &pLstValue,
+ &pLstValuePosX,
+ &pLstValuePosY,
+ &pLstValuePosZ);
+ // Statistics of each slice.
+ contourextractdata->Statistics( &pLstValue,
+ minimumZ,
+ maximumZ,
+ &resultGrayRangeCount,
+ &resultSize,
+ &resultMin,
+ &resultMax,
+ &resultAverage,
+ &resultStandardeviation);
+
+ if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1) )
+ {
+ interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
+ }
+
+ tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
+
+ tempString.Printf(_T("%d"),resultSize);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
+
+ tempString.Printf(_T("%d"),resultGrayRangeCount);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
+
+ tempString.Printf(_T("%f"),resultMin);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
+
+ tempString.Printf(_T("%f"),resultMax);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
+
+ tempString.Printf(_T("%f"),resultAverage);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
+
+ tempString.Printf(_T("%f"),resultStandardeviation);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
+
+
+ } // for iContourGroup
+ } // for z
+
+ int iTitleGroup;
+ wxString tmpTitleString;
+ int tmpIntB;
+ for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
+ {
+ tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
+ tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
+ interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
+
+ interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
+ }
+
+ interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){
+ SaveValuesXYZ( directory , namefile, typeContourGroup );
+
+ vtkImageData* mask, *value;
+ this->getMaskValue(mask, value, typeContourGroup);
+ this->SaveImageResult( directory , namefile, mask, value);
+
+
+ FILE *pFile=fopen(filename.c_str(),"w+");
+
+ int sizeZ = _theViewPanel->GetImageDataSizeZ();
+
+ wxString tmpString;
+ int i,j,maxX,maxY=sizeZ;
+ maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
+
+ int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
+ for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
+ {
+ // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
+ fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
+ }
+ fprintf(pFile,"\n" );
+
+
+
+ for ( j=0; j<maxY ; j++)
+ {
+ fprintf(pFile,"%d\t" , j );
+ for (i=0 ; i<maxX ; i++){
+ tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
+ fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
+ } // for i
+ fprintf(pFile,"\n" );
+ } // for j
+
+ fclose(pFile);
+}
+
+void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
+{
+ wxBusyCursor wait;
+ ContourExtractData *contourextractdata = new ContourExtractData();
+ //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
+ contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
+
+ std::vector<manualContourModel*> lstManConMod;
+ std::vector<manualContourModel*> lstManConModTmp;
+ std::vector<manualContourModel*> lstManConModExp;
+ std::vector<double> pLstValue;
+ std::vector<double> pLstValuePosX;
+ std::vector<double> pLstValuePosY;
+ std::vector<double> pLstValuePosZ;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
+ int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
+ int z;
+ int ii,sizeLstContourThings;
+
+
+ int minZ,maxZ;
+ double totalZ;
+ double porcent;
+ wxString tmpString;
+ minZ = 0;// _mbarrange->GetStart();
+ maxZ = sizeZ;//_mbarrange->GetEnd();
+ totalZ = maxZ-minZ+1;
+
+ contourextractdata->SetImage( imagedata);
+
+// For each slice..
+ for ( z=0 ; z<sizeZ ; z++)
+ {
+
+ porcent = 100.0* (z-minZ)/totalZ;
+
+ tmpString.Printf(_T("Saving Values"));
+ tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
+ interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
+ //_staticTextInformation->SetLabel(tmpString);
+
+
+ //Extraction data from contours of each slice
+ contourextractdata->SetZtoBeAnalys( z);
+
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
+ sizeLstContourThings = lstContourThings.size();
+
+ lstManConMod.clear();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ lstManConMod.push_back( (*contourthing)->getModel() );
+ }
+ lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
+
+
+//EED004
+
+ int iContourGroup,sizeContourGroup;
+ if (typeContourGroup==3) // contour separete
+ {
+ sizeContourGroup=lstManConModExp.size();
+ } else { // contour AND OR XOR
+ sizeContourGroup=1;
+ }
+
+ for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
+ lstManConModTmp.clear();
+ if (typeContourGroup==3) // contour separete
+ {
+ lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
+ } else { // contour AND OR XOR
+ lstManConModTmp = lstManConModExp;
+ }
+
+ contourextractdata->SetLstManualContourModel( lstManConModTmp );
+
+ pLstValue.clear();
+ pLstValuePosX.clear();
+ pLstValuePosY.clear();
+ pLstValuePosZ.clear();
+ contourextractdata->GetValuesInsideCrown( &pLstValue,
+ &pLstValuePosX,
+ &pLstValuePosY,
+ &pLstValuePosZ);
+
+ std::string temp = directory + "/" + namefile + "-slice";
+ temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
+ temp = temp + ".txt";
+
+ // LG 14/01/09 : using crea
+ wxString filename = crea::std2wx(temp);
+ /*filename.Printf(_T("%s"),directory.c_str());
+ filename.append(_T("\\"));
+ filename.append(_T("%s"),namefile.c_str());
+ filename.append(_T("-slice"));
+ filename.append(_T("%d"),z);
+ filename.append(_T("-cont"));
+ filename.append(_T("%d"),iContourGroup);
+ filename.append(_T(".txt"));*/
+ // filename.Printf(temp.c_str());
+
+
+
+ FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
+ fprintf(pFile,"value \t x \t y \t z\n" );
+ int iLstValue,sizeLstValue=pLstValue.size();
+ for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
+ {
+ fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
+ }
+ fclose(pFile);
+ } // for iContourGroup
+ } // for z
+ interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
+ //_staticTextInformation->SetLabel( _T("") );
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::getMaskValue(vtkImageData* mask,vtkImageData* value,int typeContourGroup){
+ wxBusyCursor wait;
+ ContourExtractData *contourextractdata = new ContourExtractData( true );
+ //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
+ if (typeContourGroup==3)
+ {
+ typeContourGroup=1;
+ }
+ contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
+
+ std::vector<manualContourModel*> lstManConMod;
+ std::vector<manualContourModel*> lstManConModTmp;
+ std::vector<manualContourModel*> lstManConModExp;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ vtkImageData *imagedata = _theViewPanel->getImageData();
+ int sizeZ = _theViewPanel->GetImageDataSizeZ();
+ int z;
+ int ii,sizeLstContourThings;
+
+
+ int minZ,maxZ;
+ double totalZ;
+ double porcent;
+
+ wxString tmpString;
+
+ minZ = 0;// _mbarrange->GetStart();
+ maxZ = sizeZ;//_mbarrange->GetEnd();
+ totalZ = maxZ-minZ+1;
+
+ contourextractdata->SetImage( imagedata);
+
+// For each slice..
+ for ( z=0 ; z<sizeZ ; z++)
+ {
+
+ porcent = 100.0* (z-minZ)/totalZ;
+ tmpString.Printf(_T("Saving Values"));
+ tmpString.Printf(_T("%d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
+ interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
+
+ //Extraction data from contours of each slice
+ contourextractdata->SetZtoBeAnalys( z);
+
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
+ sizeLstContourThings = lstContourThings.size();
+
+ lstManConMod.clear();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ lstManConMod.push_back( (*contourthing)->getModel() );
+ }
+ lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
+
+
+ int iContourGroup,sizeContourGroup;
+ if (typeContourGroup==3) // contour separete
+ {
+ sizeContourGroup=lstManConModExp.size();
+ } else { // contour AND OR XOR
+ sizeContourGroup=1;
+ }
+
+ for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
+ lstManConModTmp.clear();
+ if (typeContourGroup==3) // contour separete
+ {
+ lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
+ } else { // contour AND OR XOR
+ lstManConModTmp = lstManConModExp;
+ }
+
+ contourextractdata->SetLstManualContourModel( lstManConModTmp );
+ contourextractdata->CalculateImageResult(); // with actual Z
+
+ } // for iContourGroup
+ } // for z
+
+ value = contourextractdata->GetVtkImageValueResult();
+ mask = contourextractdata->GetVtkImageMaskResult();
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
+{
+
+ std::string temp = directory + "/" + namefile + "-Value.mhd";
+
+ wxString filename = crea::std2wx(temp);
+ // LG
+ // filename.Printf(_T(temp.c_str()));
+ //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
+ /*filename.Printf(_T("%s"),directory.c_str());
+ filename.append(_T("\\"));
+ filename.append(_T("%s"),namefile.c_str());
+ filename.append(_T("-Value.mhd"));*/
+
+// Image Value
+ vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
+ writerValueImage->SetInput( value );
+ writerValueImage->SetFileName( (const char *)filename.mb_str() );
+ writerValueImage->SetFileDimensionality( 3 );
+ writerValueImage->Write( );
+
+// Image Mask
+ // filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
+ temp = directory + "/" + namefile + "-Mask.mhd";
+
+ // LG 14/01/09 : using crea
+ filename = crea::std2wx(temp);
+ // filename.Printf(_T(temp.c_str()));
+
+ /*filename.Printf(_T("%s"),directory.c_str());
+ filename.append(_T("\\"));
+ filename.append(_T("%s"),namefile.c_str());
+ filename.append(_T("-Mask.mhd"));*/
+
+ vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
+ writerMaskImage->SetInput( mask );
+ writerMaskImage->SetFileName( (const char *)filename.mb_str() );
+ writerMaskImage->SetFileDimensionality( 3 );
+ writerMaskImage->Write( );
+
+ interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
+
+}
+
+
+
+void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
+ if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
+ _theViewPanel->setActualVertical( value);
+ }
+ else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) ) {
+ _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
+ }
+
+ changeInstant();
+}
+
+void wxContourMainFrame::onSnakePressed(){
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+ _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
+
+ if (vecX.size()!=0){
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int i,size=vecZ.size();
+ int actualSlice = tempVector[1];
+ for ( i=0 ; i<size ; i++ )
+ {
+ vecZ[i] = actualSlice;
+ } // for
+
+ wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
+ wxPanel* panel = new wxPanel(dialog,-1);
+ // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
+ new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
+ dialog->ShowModal();
+ } // if
+
+}
+
+void wxContourMainFrame::saveFileWithContoursAutomatique(){
+ std::string filename = kernelManager->getCurrentFileName();
+ if(filename.compare("")!=0){
+ saveFileWithContours(filename);
+ }else{
+ onSave();
}
+}
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff