//#include "wxContour_ActionCommandsID.h"
//#include "OutlineModelBuilder.h"
//#include "wxContourEventHandler.h"
+#include <creaWx.h>
//----------------------------------------------------------------------------------------------------------------
// Class implementation
_theViewPanel = NULL;
// _modelManager = NULL;
_instantPanel = NULL;
- _buttonsBar = NULL;
- _gridPanel = NULL;
- _drawToolsPanel = NULL;
- _operationsToolsPanel = NULL;
- _autoFormsPanel = NULL;
- _standardToolsPanel = NULL;
- _editionToolsPanel = NULL;
- _listViewPanel = NULL;
- _sceneManager = NULL;
+// _buttonsBar = NULL;
+// _gridPanel = NULL;
+// _drawToolsPanel = NULL;
+// _operationsToolsPanel = NULL;
+ //_autoFormsPanel = NULL;
+// _standardToolsPanel = NULL;
+// _editionToolsPanel = NULL;
+// _listViewPanel = NULL;
+// _sceneManager = NULL;
//_actualInstant = NULL;
_numberOfVariablesStatistics = 6+1;
+ _refLineControl = NULL;
+ _refLineModel = NULL;
+ _refLineView = NULL;
+ _thresholdActor = NULL;
+ _actorPresent = false;
+
// set up default notebook style
- m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
- m_notebook_theme = 0;
+// m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
+// m_notebook_theme = 0;
//wxContour_ActionCommandsID a;
}
-wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style)
+ wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
: wxPanel(parent, id, pos, size, style)
{
m_mgr.SetManagedWindow(this);
_creatingContoursActive = false;
_theViewPanel = NULL;
-// _modelManager = NULL;
+
_instantPanel = NULL;
- _buttonsBar = NULL;
- _gridPanel = NULL;
- _drawToolsPanel = NULL;
- _operationsToolsPanel = NULL;
- _autoFormsPanel = NULL;
- _standardToolsPanel = NULL;
- _editionToolsPanel = NULL;
- _listViewPanel = NULL;
- _sceneManager = NULL;
- //_actualInstant = NULL;
+ _refLineControl = NULL;
+ _refLineModel = NULL;
+ _refLineView = NULL;
+ _thresholdActor = NULL;
+ _actorPresent = false;
// set up default notebook style
m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
m_notebook_theme = 0;
//wxContour_ActionCommandsID a;
- _numberOfVariablesStatistics = 6+1;
-
+ _numberOfVariablesStatistics = 7;
- _performingOperation = new PerformingOperation();
-//JCP 17 - 10 - 2008
+ _datadir = datadir;
- inredo = 0;
- inundo = 0;
-
- kernelManager = new KernelManagerContour(images);
- //kernelManager->setVectImages(images);
- //kernelManager->initializeEnvironment();
-
- //vtkImageData* selectedimage = kernelManager->getVectImages()[0];
-//-------------------------------------------------------------
+ inredo = 0;
+ inundo = 0;
- /*frame = new wxContourMainFrame(_builder->getImSourceEnv(), _builder->getImSectionEnv(), _builder->getAxesEnv(), _builder->getContourEnv(),NULL, wxID_ANY, wxT("ROI Application Sample"), wxPoint(50,50), wxSize(800, 600));
- frame->Show(TRUE);*/
+ _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
+ _performingOperation = new PerformingOperation();
+
+ if(images.size() > 0)
+ {
+ this->setVectImages(images);
+ }
- //Creating the evtHandler of the panels
- //wxContourEventHandler * eventHandler = new wxContourEventHandler();
+}
- //Creating the window that will show the panels
+void wxContourMainFrame::setVectImages( std::vector<vtkImageData*> images ){
- //Getting the parent for the panels ( using aui )
- wxAuiNotebook * notebook = this->createNotebook();
+ #if defined(__GNUC__)
+ std::string str_home(getenv("HOME"));
+ #elif defined(_WIN32)
+ std::string str_home(getenv("USERPROFILE"));
+ #endif
+ std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
- //JCP 17 - 11 - 08
- //wxInstantChooserPanel * instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true);
- //JCP 17 - 11 - 08
std::vector<std::string> conceptNameVect;
std::vector<int> conceptSizeVect;
-
+ notebook = this->createNotebook();
- _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
- _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
+ kernelManager = new KernelManagerContour( images , _datadir+"/data/" , strCreaContourDataTmp );
- kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
+ _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
+ _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
+
+//-------------------------------------------------------------
+ kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
_instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
//*******************changeInstant();
_theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
- //eventHandler->setModelManager( kernelManager->getOutlineModelManager() );
- //eventHandler->setViewPanel( _theViewPanel );
- //_theViewPanel->initializeScenceManager();
- //eventHandler->setInstantChooserPanel( _instantPanel );
-
- //bool successConfiuration = eventHandler->configureEventsHandling();
-
- //successConfiuration &= this->configurePanels( notebook );
- this->configurePanels( notebook );
-
- interfMainPanel* pannew = interfMainPanel::getInstance(parent);//, eventHandler);
+ this->configurePanels( );
-//JCP 17 -10 - 2008
-
-
- }
+}
- wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style ){
+ wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
if(instance == NULL){
- instance = new wxContourMainFrame(parent, id, title, pos, size, images, style);
+ instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
}
return instance;
}
- std::vector<vtkImageData*> wxContourMainFrame ::getVectImages(){
+ std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
+ {
return kernelManager->getVectImages();
}
- wxContourMainFrame* wxContourMainFrame :: getInstance(){
- return instance;
-
+
+ wxContourMainFrame* wxContourMainFrame :: getInstance()
+ {
+ return instance;
+ }
+
+ void wxContourMainFrame :: resetInstance()
+ {
+ delete instance;
+ instance = NULL;
}
wxContourMainFrame :: ~wxContourMainFrame()
{
- m_mgr.UnInit();
- //El problema al cerrar la aplicacion puede estar asociado
- //a que wxAUINotebook esta en la aplicacion
- //principal (wxContourGUIExample)tambien
-//EED???? delete _theViewPanel;
-//EED???? delete _instantPanel;
-//EED???? delete _buttonsBar;
-//EED???? delete _actualInstant;
-//EED???? delete _sceneManager;
+
+ _pannew->Close();
+ interfMainPanel::resetInstance();
+ //_pannew->Destroy();
+ //delete _pannew;
+
+ m_mgr.UnInit();
+ //delete m_mgr;
+
+ //El problema al cerrar la aplicacion puede estar asociado
+ //a que wxAUINotebook esta en la aplicacion
+ //principal (wxContourGUIExample)tambien
+ //EED???? delete _theViewPanel;
+ //EED???? delete _instantPanel;
+ //EED???? delete _buttonsBar;
+ //EED???? delete _actualInstant;
+ //EED???? delete _sceneManager;
}
//------------------------------------------------------------------------------------------------------------
// Creational and initialization methods
//------------------------------------------------------------------------------------------------------------
- bool wxContourMainFrame :: configurePanels(wxAuiNotebook* theNoteBook)
+ bool wxContourMainFrame :: configurePanels( )
{
bool configured = _theViewPanel!=NULL;
configured &= _theViewPanel!=NULL;
if( _theViewPanel!=NULL )
{
- theNoteBook->AddPage( _theViewPanel, wxT(" View ") );
+ notebook->AddPage( _theViewPanel, wxT(" View ") );
m_mgr.Update();
}
if( configured )
{
- theNoteBook->AddPage( _instantPanel, wxT("Instant Page") );
+ notebook->AddPage( _instantPanel, wxT("Instant Page") );
m_mgr.Update();
}
- m_mgr.AddPane(theNoteBook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
+ m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
m_mgr.Update();
- configured &= _buttonsBar!=NULL;
- if( _buttonsBar!=NULL )
- {
- m_mgr.AddPane(_buttonsBar, wxAuiPaneInfo().
- Name(wxT("TB")).Caption(wxT("Buttons Bar")).
- ToolbarPane().Top().
- LeftDockable( ).RightDockable( false ).CloseButton(false));
- m_mgr.Update();
- }
- //CreateStatusBar();
-
+
SetMinSize(wxSize(300,300));
m_mgr.Update();
return configured;
}
- void wxContourMainFrame :: setNotebook( wxAuiNotebook * noteBook )
- {
+ bool wxContourMainFrame::addNewPanel(wxPanel* panel)
+ {
+ bool configured = panel!=NULL;
+ configured &= panel!=NULL;
+
+ if( configured )
+ {
+ notebook->AddPage( panel, wxT(" Viewer "), true );
+ m_mgr.Update();
+ }
+ return configured;
}
//------------------------------------------------------------------------------------------------------------
_instantPanel = theInstantChooserPanel;
}
- void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
- {
- _buttonsBar = theButtonsBar;
- }
+// void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
+// {
+// _buttonsBar = theButtonsBar;
+// }
- void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
- {
- _gridPanel = theGridPanel;
- }
+// void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
+// {
+// _gridPanel = theGridPanel;
+// }
- void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
- {
- _drawToolsPanel = theDrawToolsPanel;
- }
+// void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
+// {
+// _drawToolsPanel = theDrawToolsPanel;
+// }
- void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
- {
- _operationsToolsPanel = theOperationsToolsPanel;
- }
+// void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
+// {
+// _operationsToolsPanel = theOperationsToolsPanel;
+// }
- void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
- {
- _autoFormsPanel = theAutoFormsPanel;
- }
+// void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
+// {
+// _autoFormsPanel = theAutoFormsPanel;
+// }
- void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
- {
- _standardToolsPanel= theStandardToolsPanel;
- }
+// void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
+// {
+// _standardToolsPanel= theStandardToolsPanel;
+// }
- void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
- {
- _editionToolsPanel = theEditionToolsPanel;
- }
+// void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
+// {
+// _editionToolsPanel = theEditionToolsPanel;
+// }
- void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
- {
- _listViewPanel = theListViewPanel;
- }
+// void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
+// {
+// _listViewPanel = theListViewPanel;
+// }
//JCP 20-10-08 Undo redo implementation
createContour( 3 );
}
+
+void wxContourMainFrame::onCreateContourLine( ){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ createContour( 6 );
+}
+
//------------------------------------------------------------------------------------------------------------
void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
}
void wxContourMainFrame :: deleteContour( std::string theKeyName ){
- /*manualContourModel * cModel;
+ /*
+ manualContourModel * cModel;
manualViewBaseContour * cViewer;
manualContourBaseControler * cControler;
return _instantPanel->getIfConceptCheckedAt( name, pos );
}
-void wxContourMainFrame::changeInstant(){
+void wxContourMainFrame::changeInstant()
+{
std::vector<int> instantVect;
_instantPanel->getInstant( instantVect );
// Instant * theInstant = new Instant ( &instantVect );
updateInstantOutlines();
updateInstantImageData();
updateInstantAxes();
-
-
+ updateActor();
}
-void wxContourMainFrame :: updateInstantOutlines(){
-
+
+
+void wxContourMainFrame :: updateInstantOutlines()
+{
_theViewPanel->removeSceneContours();
_theViewPanel->addNameWrapperToScene();
return kernelManager->getNameWrapping(i);
}
-void wxContourMainFrame::updateInstantImageData(){
+void wxContourMainFrame::updateInstantImageData()
+{
std::vector<int> inst;
_instantPanel->getInstant(inst);
vtkImageData* img = kernelManager->getImageAtInstant(inst);
if(img!=NULL){
_theViewPanel->changeImage(img);
- }
+ showAxis(false);
+ }else{
+ int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
+ _theViewPanel->setImageSlice(z);
+ }
}
-void wxContourMainFrame::updateInstantAxes(){
+
+void wxContourMainFrame::updateInstantAxes()
+{
+}
+
+void wxContourMainFrame :: updateActor()
+{
+ if (_actorPresent)
+ {
+ int minMax[2];
+ _pannew->onThresholdInstantChange(minMax);
+
+ int z = _theViewPanel->GetZ();
+
+ vtkImageData * img = getImageData();
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+
+ imageReslice->SetInput( img );
+ imageReslice->SetInformationInput(img);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ img = imageReslice->GetOutput();
+ img->Update();
+ img->UpdateInformation();
+
+//EED??? wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+
+ double range[2];
+ img->GetScalarRange(range);
+
+ int min = floor (range[0]);
+ int max = ceil (range[1]);
+
+ //Lookup Table
+ vtkLookupTable *lookup = vtkLookupTable::New();
+ lookup->SetNumberOfTableValues(max+1);
+ lookup->SetTableRange(range);
+ lookup->SetAlphaRange(0, 1);
+ lookup->SetValueRange(0, 1);
+ lookup->SetSaturationRange(0, 0);
+ lookup->SetRampToLinear( );
+
+ //Assign a fake color for the upper image, and set the white as transparent
+ int i;
+ int minVal = minMax[0];
+ int maxVal = minMax[1];
+
+ for(i = min; i <= max; i++)
+ {
+ if( i >= minVal && i <= maxVal )
+ {
+ lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
+ }
+ else if( i >= min && i < minVal )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else if( i > maxVal && i < max )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ }
+
+ lookup->Build( );
+
+ vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
+ mapperImage->SetLookupTable( lookup );
+ mapperImage->SetInput( img );
+ //mapperImage->SetOutputFormatToRGBA( );
+
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ }
}
void wxContourMainFrame::onChangeDeep(int val){
_performingOperation->setStartOperationInstantVector( tempVector );
_performingOperation->setKeyNamesOperationElems( currentSelection );
}
+
void wxContourMainFrame::onPaste(){
}
}
-void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append ){
+void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
+{
std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
_theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
}
+///AD: 03-09 Copy the object and apply the given transformation
+void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
+{
+ std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
+ manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
+
+ manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
+ manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
+
+ double pnt1X = refPoint1->GetX();
+ double pnt1Y = refPoint1->GetY();
+// double pnt1Z = refPoint1->GetZ();
+ double pnt2X = refPoint2->GetX();
+ double pnt2Y = refPoint2->GetY();
+// double pnt2Z = refPoint2->GetZ();
+
+ double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
+ vtkTransform *t = vtkTransform::New();
+
+ t->PostMultiply();
+ t->Identity();
+ t->Translate(-pnt1X, -pnt1Y, 0);
+ t->RotateZ(-angle);
+ t->Scale(-1,1,1);
+ t->RotateZ(angle);
+ t->Translate(pnt1X, pnt1Y, 0);
+ t->Update();
+
+ int i,size=manualModel->GetSizeLstPoints();
+ for (i=0;i<size;i++)
+ {
+ manualPoint * mp = manualModel->GetManualPoint(i);
+ float vecIn[3];
+ float vecOut[3];
+ vecIn[0]=mp->GetX();
+ vecIn[1]=mp->GetY();
+ vecIn[2]=mp->GetZ();
+ t->TransformPoint( vecIn, vecOut );
+ mp->SetPointX( vecOut[0] );
+ mp->SetPointY( vecOut[1] );
+ mp->SetPointZ( vecOut[2] );
+ }
+
+ _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
+}
+
void wxContourMainFrame ::loadState(std::string filename){
char tmp[255];
FILE *pFile=fopen(filename.c_str(),"r+");
if (dialog.ShowModal() == wxID_OK)
{
std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
+ kernelManager->setCurrentFileName(fileNameContourROI);
saveFileWithContours( fileNameContourROI );
}
}
return _theViewPanel->getImageData();
}
+void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
+{
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z = _theViewPanel->GetZ();
+ SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
+ RefreshInterface();
+}
+
+void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
+{
+
+ int typeofcontour = 1;
+ //Image Data
+ vtkImageData *imagedata = getImageData();
+
+ //Tipo de pixeles a utilizar internamente en ITK
+ typedef float InternalPixelType;
+ const unsigned int Dimension = 2;
+ typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
+
+ //Tipo de pixeles de salida 1
+ typedef unsigned char OutputPixelType;
+ typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
+
+ //Tipo de pixeles de salida 2
+ typedef unsigned short OutputPixelType2;
+ typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
+
+ //DefiniciÛn del thresholder
+ typedef itk::BinaryThresholdImageFilter<
+ InternalImageType,
+ OutputImageType > ThresholdingFilterType;
+
+ //DefiniciÛn del primer filtro de conversiÛn de pixeles
+ typedef itk::CastImageFilter<
+ OutputImageType, OutputImageType2 > CastFilterType;
+
+ //DefiniciÛn del segundo tipo de conversiÛn de pixeles
+ typedef itk::CastImageFilter<
+ OutputImageType2, InternalImageType > CastFilterType2;
+
+ //Tercer tipo de conversiÛn
+ typedef itk::RescaleIntensityImageFilter<
+ InternalImageType,
+ OutputImageType > CastFilterType3;
+
+ //Cuarto tipo de conversiÛn
+ typedef itk::RescaleIntensityImageFilter<
+ OutputImageType,
+ OutputImageType > CastFilterType4;
+
+ ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
+
+ thresholder->SetLowerThreshold( 0.0 );
+ thresholder->SetUpperThreshold( 128 );
+
+ thresholder->SetOutsideValue( 255 );
+ thresholder->SetInsideValue( 0 );
+
+ //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
+ typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
+ typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
+ typedef itk::ImageFileWriter< OutputImageType > WriterType;
+
+ ConnectorType::Pointer connector= ConnectorType::New();
+ ConnectorType2::Pointer connector2= ConnectorType2::New();
+
+
+ CastFilterType::Pointer filter=CastFilterType::New();
+ CastFilterType2::Pointer filter2=CastFilterType2::New();
+
+ connector->SetInput( imagedata );
+ filter2->SetInput(connector->GetOutput());
+
+ typedef itk::CurvatureAnisotropicDiffusionImageFilter<
+ InternalImageType,
+ InternalImageType > SmoothingFilterType;
+
+ SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
+
+ typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
+ InternalImageType,
+ InternalImageType > GradientFilterType;
+
+ typedef itk::SigmoidImageFilter<
+ InternalImageType,
+ InternalImageType > SigmoidFilterType;
+
+ GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
+
+ SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
+
+ sigmoid->SetOutputMinimum( 0.0 );
+ sigmoid->SetOutputMaximum( 255.0 );
+
+
+ typedef itk::FastMarchingImageFilter<
+ InternalImageType,
+ InternalImageType > FastMarchingFilterType;
+
+
+ FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
+
+ typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
+ InternalImageType > GeodesicActiveContourFilterType;
+ GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
+ GeodesicActiveContourFilterType::New();
+
+ typedef itk::ZeroCrossingImageFilter<
+ InternalImageType,
+ InternalImageType > ZeroCrossingFilterType;
+ZeroCrossingFilterType::Pointer zeroCrossing =
+ ZeroCrossingFilterType::New();
+
+const double propagationScaling = atof( crea::wx2std(prop).c_str() );
+
+ geodesicActiveContour->SetPropagationScaling( propagationScaling );
+ geodesicActiveContour->SetCurvatureScaling( 1.0 );
+ geodesicActiveContour->SetAdvectionScaling( 1.0 );
+
+ geodesicActiveContour->SetMaximumRMSError( 0.02 );
+ int it=atoi( crea::wx2std(iter).c_str() );
+ geodesicActiveContour->SetNumberOfIterations( it );
+
+ smoothing->SetInput( filter2->GetOutput() );
+ gradientMagnitude->SetInput( smoothing->GetOutput() );
+ sigmoid->SetInput( gradientMagnitude->GetOutput() );
+ fastMarching->SetInput( sigmoid->GetOutput() );
+ geodesicActiveContour->SetInput( fastMarching->GetOutput() );
+ geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
+
+ zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
+ //thresholder->SetInput( zeroCrossing->GetOutput() );
+ thresholder->SetInput( geodesicActiveContour->GetOutput() );
+ connector2->SetInput( thresholder->GetOutput() );
+
+
+ smoothing->SetTimeStep( 0.125 );
+ smoothing->SetNumberOfIterations( 5 );
+ smoothing->SetConductanceParameter( 9.0 );
+
+
+ const double sigma = atof( crea::wx2std(sigm).c_str() );
+ gradientMagnitude->SetSigma( sigma );
+
+ const double alpha = atof( crea::wx2std(alf).c_str() );
+ const double beta = atof( crea::wx2std(bet).c_str() );
+
+ sigmoid->SetAlpha( alpha );
+ sigmoid->SetBeta( beta );
+
+ typedef FastMarchingFilterType::NodeContainer NodeContainer;
+ typedef FastMarchingFilterType::NodeType NodeType;
+
+ NodeContainer::Pointer seeds = NodeContainer::New();
+
+ InternalImageType::IndexType seedPosition;
+ seedPosition[0] = x;
+ seedPosition[1] = y;
+
+ const double initialDistance = atof( crea::wx2std(distanc).c_str() );
+
+ NodeType node;
+
+ const double seedValue = - initialDistance;
+
+ node.SetValue( seedValue );
+ node.SetIndex( seedPosition );
+
+ seeds->Initialize();
+ seeds->InsertElement( 0, node );
+
+ fastMarching->SetTrialPoints( seeds );
+
+ fastMarching->SetSpeedConstant( 1.0 );
+
+ fastMarching->SetOutputSize(
+ connector->GetOutput()->GetBufferedRegion().GetSize() );
+
+ fastMarching->SetStoppingValue( 800 );
+ try
+ {
+
+ connector2->Update();
+ vtkImageData *idata = connector2->GetOutput();
+
+ vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
+
+ cntVTK->SetInput( idata );
+
+ cntVTK->SetNumberOfContours( 1 );
+ cntVTK->SetValue( 0, 255 );
+ cntVTK->Update( );
+ cntVTK->UpdateInformation();
+
+ vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
+ cpd->SetInput( cntVTK->GetOutput( ) );
+ cpd->Update( );
+ cpd->UpdateInformation();
+
+ vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
+ conn->SetExtractionModeToLargestRegion( );
+ conn->SetInput( cpd->GetOutput( ) );
+ conn->Update( );
+ conn->UpdateInformation();
+
+ vtkStripper* vtkstripper = vtkStripper::New( );
+ vtkstripper->SetInput( conn->GetOutput() );
+ vtkstripper->Update();
+ vtkstripper->UpdateInformation();
+
+
+ vtkPolyData* polyDataResult = cntVTK->GetOutput();
+ std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
+ polyDataResult->Update( );
+ polyDataResult->UpdateInformation();
+
+//EED
+ /*
+ofstream myfile;
+myfile.open ("C:/Creatis/example.txt");
+myfile << "\n";
+polyDataResult->Print(myfile);
+myfile << "-------------------------------------\n";
+polyDataResult->GetLines()->Print(myfile);
+myfile.close();*/
+
+ cntVTK -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
+
+
+//--Calculating control points
+
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecXo;
+ std::vector<double> vecYo;
+ std::vector<double>::iterator vecXoi;
+ std::vector<double>::iterator vecYoi;
+ std::vector<double> vecZ;
+
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+
+
+ double *p;
+ double xAct=0;
+ double yAct=0;
+ int ii,size=polyDataResult->GetNumberOfPoints();
+ofstream myfile;
+myfile.open ("C:/Creatis/example2.txt");
+
+ size=polyDataResult->GetNumberOfPoints();
+ for (ii=0;ii<size;ii++)
+ {
+ if(ii==0)
+ {
+ xAct=x;
+ yAct=y;
+ }
+ p = polyDataResult->GetPoint(ii);
+ double x=p[0];
+ double y=p[1];
+ /*if(fabs(yAct-y)>20)
+ {
+ if((xAct-x)>1 || (xAct-x)<-1)
+ {
+ vecX.push_back( p[0] );
+ vecY.push_back( p[1] );
+ myfile <<p[0]<<","<<p[1]<<"\n";
+ std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+ std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+ std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+ vecZ.push_back( 900 );
+ xAct=x;
+ yAct=y;
+ }
+ else
+ {
+ vecXo.push_back(p[0]);
+ vecYo.push_back(p[1]);
+ }
+
+ }
+ else*/ if(fabs(xAct-x)>11)
+ {
+ vecXo.push_back(p[0]);
+ vecYo.push_back(p[1]);
+ }
+ else
+ {
+ vecX.push_back( p[0] );
+ myfile <<p[0]<<","<<p[1]<<"\n";
+ std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
+ std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
+ std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
+ vecY.push_back( p[1] );
+ vecZ.push_back( 900 );
+ xAct=x;
+ yAct=y;
+ }
+
+
+ }
+
+ while(!vecXo.empty())
+ {
+ vecX.push_back(vecXo.back());
+ std::cout<<" x Siguiente "<<vecXo.back();
+ vecXo.pop_back();
+ vecZ.push_back( 900 );
+ }
+ while(!vecYo.empty())
+ {
+ vecY.push_back(vecYo.back());
+ vecYo.pop_back();
+ }
+ myfile.close();
+
+ /*for(int l=0;l<vecX.size();l++)
+ {
+ if(l==0)
+ {
+ vecXo.push_back(p[0]);
+ vecYo.push_back(p[1]);
+ }
+ else
+ {
+ if(vecXoi[l-1]==)
+ {
+ }
+ }
+
+ }*/
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+
+int method=2;
+ if (method==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( 15 );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ //--Adding contour to the system
+
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+
+ manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
+ if (sizeCtrPt>=3){
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+
+
+
+ WriterType::Pointer writer = WriterType::New();
+ CastFilterType3::Pointer caster = CastFilterType3::New();
+
+ caster->SetInput( gradientMagnitude->GetOutput() );
+ writer->SetInput( caster->GetOutput() );
+ writer->SetFileName("Gradient Magnitude.png");
+ caster->SetOutputMinimum( 0 );
+ caster->SetOutputMaximum( 255 );
+ writer->Update();
+
+ CastFilterType3::Pointer caster2 = CastFilterType3::New();
+ WriterType::Pointer writer2 = WriterType::New();
+
+ caster2->SetInput( sigmoid->GetOutput() );
+ writer2->SetInput( caster2->GetOutput() );
+ writer2->SetFileName("Sigmoid.png");
+ caster2->SetOutputMinimum( 0 );
+ caster2->SetOutputMaximum( 255 );
+ writer2->Update();
+
+ CastFilterType3::Pointer caster3 = CastFilterType3::New();
+ WriterType::Pointer writer3 = WriterType::New();
+
+ caster3->SetInput( fastMarching->GetOutput() );
+ writer3->SetInput( caster3->GetOutput() );
+ writer3->SetFileName("FastMarching.bmp");
+ caster3->SetOutputMinimum( 0 );
+ caster3->SetOutputMaximum( 255 );
+ writer3->Update();
+
+ CastFilterType3::Pointer caster4 = CastFilterType3::New();
+ WriterType::Pointer writer4 = WriterType::New();
+
+ caster4->SetInput( geodesicActiveContour->GetOutput() );
+ writer4->SetInput( caster4->GetOutput() );
+ writer4->SetFileName("GeodesicActiveContour.png");
+ caster4->SetOutputMinimum( 0 );
+ caster4->SetOutputMaximum( 255 );
+ writer4->Update();
+
+ CastFilterType3::Pointer caster5 = CastFilterType3::New();
+ WriterType::Pointer writer5 = WriterType::New();
+
+ caster5->SetInput( zeroCrossing->GetOutput() );
+ writer5->SetInput( caster5->GetOutput() );
+ writer5->SetFileName("ZeroCrossing.bmp");
+ caster5->SetOutputMinimum( 0 );
+ caster5->SetOutputMaximum( 255 );
+ writer5->Update();
+ }
+ catch( itk::ExceptionObject & excep )
+ {
+ std::cerr << "Exception caught !" << std::endl;
+ std::cerr << excep << std::endl;
+ }
+}
+
void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
//JCP 20-10-08 Undo redo implementation
RefreshInterface();
}
+
void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
{
int typeofcontour = 1;
{
id = polyDataResult->GetLines()->GetData()->GetValue(ii);
p = polyDataResult->GetPoint(id);
- double x=p[0];
- double y=p[1];
+// double x=p[0];
+// double y=p[1];
vecX.push_back( p[0] );
vecY.push_back( p[1] );
- vecZ.push_back( -900 );
+ vecZ.push_back( 900 );
// vecZ.push_back( p[2] );
}
} // if addedModel
} // if sizeCtrPt
}
-
int wxContourMainFrame::GetImageDataSizeZ(){
return _theViewPanel->GetImageDataSizeZ();
}
RefreshInterface();
}
-void wxContourMainFrame::showAxis(bool show){
+
+//Creates a reference line to be used as the axis of the mirroring
+void wxContourMainFrame::referenceLine()
+{
+ if (_refLineControl==NULL)
+ {
+ wxBusyCursor wait;
+ double spc[3];
+
+ vtkImageData *vtkimagedata = _theViewPanel->getImageData();
+ vtkimagedata->GetSpacing(spc);
+
+ wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
+
+ _refLineControl = new manualLineControler();
+ _refLineModel = new manualContourModelLine();
+ _refLineView = new manualViewLine();
+ _refLineView->SetModel( _refLineModel );
+ _refLineView->SetWxVtkBaseView( viewer2D );
+ _refLineView->SetRange( 2 );
+ _refLineView->SetZ( 1200 );
+
+ _refLineView->SetSpacing(spc);
+
+ _refLineView->SetColorNormalContour(0, 0, 1);
+ _refLineView->SetColorEditContour(0, 0.5, 0.5);
+ _refLineView->SetWidthLine(4);
+
+ _refLineControl->SetModelView( _refLineModel , _refLineView );
+ viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
+ _refLineModel->SetCloseContour(false);
+ _refLineControl->CreateNewManualContour();
+
+//EED?? double z = _refLineControl->GetZ();
+ /*
+ _refLineControl->AddPoint(50,100,z);
+ _refLineControl->AddPoint(80,40,z);
+ _refLineControl->SetCompleteCreation(true);
+
+ _refLineModel->AddPoint(50,100,z);
+ _refLineModel->AddPoint(80,40,z);
+ _refLineModel->UpdateSpline();
+
+ _refLineView->UpdateViewPoint(0);
+ _refLineView->UpdateViewPoint(1);
+ */
+
+ _refLineControl->SetActive(true);
+ _refLineView->RefreshContour();
+ }
+}
+
+//Hides the referenceLine
+void wxContourMainFrame::refLineHide()
+{
+ if (_refLineControl!=NULL)
+ {
+ if (_refLineControl->GetActive())
+ {
+ _refLineView->RemoveCompleteContourActor();
+ _refLineControl->SetEditable(false);
+ _refLineControl->SetActive(false);
+
+ RefreshInterface();
+ }
+ }
+}
+
+//Shows the referenceLine
+void wxContourMainFrame::refLineShow()
+{
+ if (_refLineControl!=NULL)
+ {
+ if (_refLineControl->GetActive()==false)
+ {
+ wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
+
+ _refLineView->SetModel( _refLineModel );
+ _refLineView->SetWxVtkBaseView( viewer2D );
+ _refLineView->SetRange( 2 );
+ _refLineView->SetZ( 1200 );
+
+ _refLineControl->SetModelView( _refLineModel , _refLineView );
+ viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
+ _refLineControl->CreateNewManualContour();
+ _refLineControl->SetActive(true);
+ _refLineView->RefreshContour();
+
+ RefreshInterface();
+ }
+ }
+}
+
+void wxContourMainFrame::refLineChangeWidth(int width)
+{
+ _refLineView->SetWidthLine(width);
+ _refLineView->RefreshContour();
+
+ RefreshInterface();
+}
+
+
+void wxContourMainFrame::onMirror()
+{
+ //AD:02-09
+ std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
+ std::vector<std::string> filterCurrentSelection;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->reset();
+ _performingOperation->setStartCommand( COPY );
+ _performingOperation->setStartOperationInstantVector( tempVector );
+ _performingOperation->setKeyNamesOperationElems( currentSelection );
+
+ char theStartCommand = _performingOperation->getStartCommand();
+ if ( theStartCommand == COPY )
+ {
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->setEndOperationInstantVector ( tempVector );
+ std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
+ int i,size = elems.size();
+ for( i=0; i<size; i++ )
+ {
+ createMirrorContourOf( elems[i], tempVector, i>0 );
+ }
+ }
+
+ //deleteContour( _refName );
+ //_refName = "";
+}
+
+void wxContourMainFrame::onThreshold(int minVal, int maxVal)
+{
+ if (!_actorPresent)
+ {
+ int z = _theViewPanel->GetZ();
+
+ vtkImageData * img = getImageData();
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+
+ imageReslice->SetInput( img );
+ imageReslice->SetInformationInput(img);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ img = imageReslice->GetOutput();
+ img->Update();
+ img->UpdateInformation();
+
+ wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+
+ double range[2];
+ img->GetScalarRange(range);
+
+ int min = floor (range[0]);
+ int max = ceil (range[1]);
+
+ //Lookup Table
+ vtkLookupTable *lookup = vtkLookupTable::New();
+ lookup->SetNumberOfTableValues(max+1);
+ lookup->SetTableRange(range);
+ lookup->SetAlphaRange(0, 1);
+ lookup->SetValueRange(0, 1);
+ lookup->SetSaturationRange(0, 0);
+ lookup->SetRampToLinear( );
+
+ //Assign a fake color for the upper image, and set the white as transparent
+ int i;
+ for(i = min; i <= max; i++)
+ {
+ if( i >= minVal && i <= maxVal )
+ {
+ lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
+ }
+ else if( i >= min && i < minVal )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else if( i > maxVal && i < max )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ }
+
+ lookup->Build( );
+
+ vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
+ mapperImage->SetLookupTable( lookup );
+ mapperImage->SetInput( img );
+ //mapperImage->SetOutputFormatToRGBA( );
+
+ if (_thresholdActor==NULL)
+ {
+ _thresholdActor = vtkImageActor::New( );
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ _thresholdActor->SetOpacity( 0.6 );
+ _thresholdActor->SetPosition( 0,0, z+1 );
+ _thresholdActor->InterpolateOn( );
+ }
+ else
+ {
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ }
+
+ baseView->GetRenderer()->AddActor( _thresholdActor );
+ _actorPresent = true;
+ }
+
+ RefreshInterface();
+/*
+ vtkImageViewer2* viewer = vtkImageViewer2::New();
+ viewer->SetInput( upperImageActor->GetInput() );
+ viewer->SetColorLevel((range[1]-range[0])/2);
+ viewer->SetColorWindow(range[1]);
+ viewer->GetRenderer()->AddActor( upperImageActor );
+ viewer->Render();
+*/
+
+}
+
+void wxContourMainFrame::onThresholdChange(int minVal, int maxVal)
+{
+ if (_actorPresent)
+ {
+ int z = _theViewPanel->GetZ();
+
+ vtkImageData * img = getImageData();
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+
+ imageReslice->SetInput( img );
+ imageReslice->SetInformationInput(img);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ img = imageReslice->GetOutput();
+ img->Update();
+ img->UpdateInformation();
+
+//EED?? wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+
+ double range[2];
+ img->GetScalarRange(range);
+
+ int min = floor (range[0]);
+ int max = ceil (range[1]);
+
+ //Lookup Table
+ vtkLookupTable *lookup = vtkLookupTable::New();
+ lookup->SetNumberOfTableValues(max+1);
+ lookup->SetTableRange(range);
+ lookup->SetAlphaRange(0, 1);
+ lookup->SetValueRange(0, 1);
+ lookup->SetSaturationRange(0, 0);
+ lookup->SetRampToLinear( );
+
+ //Assign a fake color for the upper image, and set the white as transparent
+ int i;
+ for(i = min; i <= max; i++)
+ {
+ if( i >= minVal && i <= maxVal )
+ {
+ lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
+ }
+ else if( i >= min && i < minVal )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else if( i > maxVal && i < max )
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ else
+ {
+ lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
+ }
+ }
+
+ lookup->Build( );
+
+ vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
+ mapperImage->SetLookupTable( lookup );
+ mapperImage->SetInput( img );
+ //mapperImage->SetOutputFormatToRGBA( );
+
+ _thresholdActor->SetInput( mapperImage->GetOutput() );
+ }
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onThresholdInterpolation(bool interpolate)
+{
+ if (_thresholdActor!=NULL)
+ {
+ if (interpolate)
+ {
+ _thresholdActor->InterpolateOn( );
+ }
+
+ else
+ {
+ _thresholdActor->InterpolateOff( );
+ }
+
+ RefreshInterface();
+ }
+}
+
+void wxContourMainFrame::onThresholdChangeOpacity (int opacity)
+{
+ if (_actorPresent)
+ {
+ _thresholdActor->SetOpacity(opacity*0.1);
+ }
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onThresholdRemove()
+{
+ if (_actorPresent)
+ {
+ wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
+ baseView->GetRenderer()->RemoveActor( _thresholdActor );
+ _actorPresent = false;
+ }
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::showAxis(bool show)
+{
_theViewPanel->SetVisibleAxis(show);
_theViewPanel->Refresh();
}
void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
_theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
-
RefreshInterface();
}
void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){
SaveValuesXYZ( directory , namefile, typeContourGroup );
- SaveImageResult( directory , namefile, typeContourGroup);
+
+ vtkImageData* mask, *value;
+ this->getMaskValue(mask, value, typeContourGroup);
+ this->SaveImageResult( directory , namefile, mask, value);
FILE *pFile=fopen(filename.c_str(),"w+");
int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
{
- fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
+ // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
+ fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
}
fprintf(pFile,"\n" );
temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
temp = temp + ".txt";
- wxString filename;
+ // LG 14/01/09 : using crea
+ wxString filename = crea::std2wx(temp);
/*filename.Printf(_T("%s"),directory.c_str());
filename.append(_T("\\"));
filename.append(_T("%s"),namefile.c_str());
filename.append(_T("-cont"));
filename.append(_T("%d"),iContourGroup);
filename.append(_T(".txt"));*/
- filename.Printf(temp.c_str());
+ // filename.Printf(temp.c_str());
+
+
+
FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
fprintf(pFile,"value \t x \t y \t z\n" );
int iLstValue,sizeLstValue=pLstValue.size();
delete contourextractdata;
}
-void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, int typeContourGroup)
-{
+void wxContourMainFrame::getMaskValue(vtkImageData* mask,vtkImageData* value,int typeContourGroup){
wxBusyCursor wait;
ContourExtractData *contourextractdata = new ContourExtractData( true );
//int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
}
contourextractdata->SetLstManualContourModel( lstManConModTmp );
-
-
-// for (ii=0 ; ii<sizeLstContourThings ; ii++)
-// {
-// ContourThing **contourthing = lstContourThings[ii];
-// lstManConMod.push_back( (*contourthing)->getModel() );
-// }
-// contourextractdata->SetLstManualContourModel( lstManConMod );
-
contourextractdata->CalculateImageResult(); // with actual Z
} // for iContourGroup
} // for z
+ value = contourextractdata->GetVtkImageValueResult();
+ mask = contourextractdata->GetVtkImageMaskResult();
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
+{
+
std::string temp = directory + "/" + namefile + "-Value.mhd";
- wxString filename;
- filename.Printf(_T(temp.c_str()));
+ wxString filename = crea::std2wx(temp);
+ // LG
+ // filename.Printf(_T(temp.c_str()));
//filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
/*filename.Printf(_T("%s"),directory.c_str());
filename.append(_T("\\"));
// Image Value
vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
- writerValueImage->SetInput( contourextractdata->GetVtkImageValueResult() );
+ writerValueImage->SetInput( value );
writerValueImage->SetFileName( (const char *)filename.mb_str() );
writerValueImage->SetFileDimensionality( 3 );
writerValueImage->Write( );
// filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
temp = directory + "/" + namefile + "-Mask.mhd";
- filename.Printf(_T(temp.c_str()));
+ // LG 14/01/09 : using crea
+ filename = crea::std2wx(temp);
+ // filename.Printf(_T(temp.c_str()));
/*filename.Printf(_T("%s"),directory.c_str());
filename.append(_T("\\"));
filename.append(_T("-Mask.mhd"));*/
vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
- writerMaskImage->SetInput( contourextractdata->GetVtkImageMaskResult() );
+ writerMaskImage->SetInput( mask );
writerMaskImage->SetFileName( (const char *)filename.mb_str() );
writerMaskImage->SetFileDimensionality( 3 );
writerMaskImage->Write( );
interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
- delete contourextractdata;
+
}
+
+
void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
_theViewPanel->setActualVertical( value);
changeInstant();
}
+
+void wxContourMainFrame::onSnakePressed(){
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+ _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
+
+ if (vecX.size()!=0){
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int i,size=vecZ.size();
+ int actualSlice = tempVector[1];
+ for ( i=0 ; i<size ; i++ )
+ {
+ vecZ[i] = actualSlice;
+ } // for
+
+ wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
+ wxPanel* panel = new wxPanel(dialog,-1);
+ // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
+ new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
+ dialog->ShowModal();
+ } // if
+
+}
+
+void wxContourMainFrame::saveFileWithContoursAutomatique(){
+ std::string filename = kernelManager->getCurrentFileName();
+ if(filename.compare("")!=0){
+ saveFileWithContours(filename);
+ }else{
+ onSave();
+ }
+}
+
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff