+/*# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+# pour la Sant�)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+# This software is governed by the CeCILL-B license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL-B
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+# or in the file LICENSE.txt.
+#
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
+
#ifndef __wxContourMainFrame_h_INCLUDED_H__
#define __wxContourMainFrame_h_INCLUDED_H__
//------------------------------------------------------------------------------------------------------------
#include "wx/aui/aui.h"
-#include "ContourThing.h"
-#include "AxeThing.h"
-#include "ImageSourceThing.h"
-#include "ImageSectionThing.h"
-#include "InstantMembersNameList.h"
-#include "OutlineGroup.h"
-#include "SomeEnvironment.h"
-#include "ContourWorkspace.h"
-#include "ContourWrap_ViewControl.h"
-#include "Instant.h"
-
-#include "OutlineModelManager.h"
+#include "interfMainPanel.h"
+#include "KernelManagerContour.h"
+
+//#include "wxVtkBaseView_SceneManager.h"
#include "wxInstantChooserPanel.h"
-#include "wxContour_ButtonsBar.h"
-#include "wxContour_ControlPanel.h"
#include "wxContourViewPanel.h"
-#include "wxContour_Grid.h"
-#include "wxContour_DrawToolsPanel.h"
-#include "wxContour_OperationsToolsPanel.h"
-#include "wxContour_AutomaticFormsToolsPanel.h"
-#include "wxContour_StandardToolsPanel.h"
-#include "wxContour_EdtionToolsPanel.h"
-#include "wxContour_ListViewPanel.h"
-#include "wxVtkBaseView_SceneManager.h"
+//#include "ContourWorkspace.h"
+#include "ContourExtractData.h"
+#include "PerformingOperation.h"
+
+#include "manualLineControler.h"
+#include "manualContourModelLine.h"
+#include "manualViewLine.h"
+
+#include "ThresholdImageView.h"
+#include "ThresholdImageViewPanel.h"
+#include "ColorLayerImageView.h"
+#include "ColorLayerImageViewPanel.h"
+
+
+//ITK
+#include "itkImage.h"
+#include "itkGeodesicActiveContourLevelSetImageFilter.h"
+
+#include "itkCurvatureAnisotropicDiffusionImageFilter.h"
+#include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
+#include "itkSigmoidImageFilter.h"
+#include "itkFastMarchingImageFilter.h"
+#include "itkRescaleIntensityImageFilter.h"
+#include "itkBinaryThresholdImageFilter.h"
+#include "itkZeroCrossingImageFilter.h"
+#include "itkCastImageFilter.h"
+
+//EED10JUIN2011 #include "itkImageFileWriter.h"
+
+#include "itkImageToVTKImageFilter.h"
+#include "itkVTKImageToImageFilter.h"
+
+//VTK
+#include <vtkImageSeedConnectivity.h>
+#include <vtkImageMarchingCubes.h>
+#include "vtkContourFilter.h"
+#include "vtkMarchingContourFilter.h"
+#include "vtkPolyDataConnectivityFilter.h"
+#include "vtkCleanPolyData.h"
+#include "vtkImageReslice.h"
+#include "vtkMetaImageWriter.h"
+#include "vtkImageData.h"
+#include "vtkTransform.h"
+
+#include "vtkCamera.h"
+#include "vtkImageActor.h"
+#include <vtkImageMapToColors.h>
+#include <vtkLookupTable.h>
+#include <vtkCommand.h>
+
+//#include "vtkMetaImageReader.h"
//------------------------------------------------------------------------------------------------------------
// Events declaration
//------------------------------------------------------------------------------------------------------------
// Class definition
//------------------------------------------------------------------------------------------------------------
-
+class interfMainPanel;
class wxContourMainFrame : public wxPanel {
public:
//------------------------------------------------------------------------------------------------------------
// Constructors & Destructors
//------------------------------------------------------------------------------------------------------------
-
+
wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
+ wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
~wxContourMainFrame();
//------------------------------------------------------------------------------------------------------------
// Creational and initialization methods
//------------------------------------------------------------------------------------------------------------
- bool configurePanels(wxAuiNotebook * theNoteBook );
- void setNotebook( wxAuiNotebook * theNoteBook );
+ void setVectImages(std::vector<vtkImageData*> imgs);
+
+ bool configurePanels( );
+
+ bool addNewPanel(wxPanel* panel);
wxAuiNotebook * createNotebook();
void createInstantChooserPanel(wxAuiNotebook * parent);
void createViewPanel(wxAuiNotebook * parent);
-
+
void createInstantChooserPanel(wxWindow * parent);
void createViewPanel(wxWindow * parent);
-
- void setViewPanel( wxContourViewPanel * theViewPanel );
void setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel );
- void setButtonsBar( wxContour_ButtonsBar * theButtonsBar );
-
- void setGrid( wxContour_Grid * theGridPanel );
-
- void setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel );
-
- void setOperationsToolsPanel( wxContour_OperationsToolsPanel * theDrawToolsPanel );
-
- void setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel );
+ void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
- void setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel );
+ void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
- void setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel );
-
- void setListViewPanel( wxContour_ListViewPanel * theListViewPanel );
+ void ShowToolsPanel(bool show);
////------------------------------------------------------------------------------------------------------------
//// Methods for capturing events
////------------------------------------------------------------------------------------------------------------
-
+
////------------------------------------------------------------------------------------------------------------
//// Model management methods
////------------------------------------------------------------------------------------------------------------
-
+
//------------------------------------------------------------------------------------------------------------
// Attributes getters and setters
//------------------------------------------------------------------------------------------------------------
+ static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
+ static wxContourMainFrame* getInstance();
+ static void resetInstance();
//------------------------------------------------------------------------------------------------------------
// Other functional methods
//------------------------------------------------------------------------------------------------------------
+ /*
+ ** This method returns the vector of images selected by the user
+ ** return value std::vector<vtkImageData*>
+ */
+ std::vector<vtkImageData*> getVectImages();
+
+ /**
+ ** This methods connect the event in the class interfMainPanel with the world of the appli
+ **/
+ void onCreateContourSpline( );
+ void onCreateContourRectangle( );
+ void onCreateContourCircle( );
+ void onCreateContourLine( );
+ void onCreateContourPoints( );
+ void onCreateContourPolygon( );
+ void onCreateContourBullEye(wxPanel* pan);
+ /////////////////////////////////
+ void onDeleteContour();
+ void deleteContours( std::vector<std::string> keyNamesVector );
+ void deleteContour( std::string theKeyName );
+ void onDeleteContoursActSlice();
+ void onDeleteAllContours();
+ void deleteAllContours();
+ void setConceptValue( std::string name, int value );
+ ConceptDataWrap* getLastConceptData();
+ bool getIfConceptCheckedAt( std::string name, int pos );
+
+ void changeInstant();
+
+ int getNamesWrappingSize();
+
+ std::string getNameWrapping(int i);
+
+ void updateInstantOutlines();
+ void updateInstantImageData();
+ void updateInstantAxes();
+
+ void onChangeDeep(int val);
+
+///////////////////////////
+ void onCopy();
+ void onPaste();
+ void onUndo();
+ void onRedo();
+ void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
+ void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
+///////////////////////7
+ void onLoad();
+ void onSave();
+ void onImport();
+ void onTest();
+ void openContours( FILE *pFile, FILE *pFileData, bool staticContour );
+
+ void RefreshInterface();
+
+ vtkImageData* getImageData();
+
+ void onSegmentationOneSlice(int isovalue,int sampling,int method);
+ void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
+ void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
+ void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
+ void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
+ int GetImageDataSizeZ();
+ void GetImageDataRange(double *range);
+ void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
+
+ //AD
+ void referenceLine();
+ void refLineHide();
+ void refLineShow();
+ void refLineChangeWidth(int width);
+
+ //AD
+ void onMirror();
+
+
+//====================================================================================================
+
+ void showAxis(bool show);
+ void onRigidPressed();
+ void onWidthOfContour(double width);
+ int getColorWindow();
+ int getWindowLevel();
+ void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
+ void onInterpolation(bool interpolate);
+ void onChangeInstant(std::string name,int actual);
+ void resetAppend();
+ void onSpreadAdd();
+ void onSpreadAddAll();
+ void onSpreadGo(int type);
+ void getInstantVector(std::vector<int>& tempVector);
+ std::vector<std::string> getOutlinesName(int slide);
+
+ //
+ //
+ // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
+ //
+ void onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
+ void onSaveResults(std::string directory,std::string namefile, std::string filename,
+ int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
+ void SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
+ void onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
+ void onSnakePressed();
+ void saveFileWithContoursAutomatique();
+ void ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
+ wxPanel *getMaskImageViewPanel(wxWindow *parent);
+ void SetContourGroup(int contourGroup);
+ wxPanel *getThresholdImageViewPanel(wxWindow *parent);
+ wxPanel *getColorLayerImageViewPanel(wxWindow *parent);
+
+
+//CMRU 17-08-09-----------------------------------------------------------------------------------------------
+
+ /**
+ * Associates the String parameter with the contour
+ * @param label Label entered by the user
+ * @param manualBaseModel Currently selected contour
+ */
+ void onPrintLabel (wxString label, manualBaseModel* manualModel);
-private:
- //------------------------------------------------------------------------------------------------------------
- // Private methods
- //------------------------------------------------------------------------------------------------------------
-
-
- //------------------------------------------------------------------------------------------------------------
- // Attributtes
- //------------------------------------------------------------------------------------------------------------
-
- wxAuiManager m_mgr;
- /*
- wxArrayString m_perspectives;
- wxMenu* m_perspectives_menu;
+ /**
+ * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
+ * @param manualBaseModel Currently selected contour
*/
- long m_notebook_style;
- long m_notebook_theme;
+ void onInsertCalculation(manualBaseModel* manualModel);
- wxContourViewPanel * _theViewPanel;
+ /**
+ * Assigns and returns the value of a pixel in millimeters
+ @ param value Measure of the pixel in millimeters
+ */
+ double onePixelSize(double value);
- OutlineModelManager * _modelManager;
+ /**
+ * Returns the type of the currently selected contour
+ */
+ int getType();
- wxInstantChooserPanel * _instantPanel;
+ /**
+ * Returns the size in pixels of the currently selected contour
+ */
+ double getContourSizeInPixels();
- wxContour_ButtonsBar * _buttonsBar;
+ /**
+ * Returns the currently selected contour. If no contour is selected returns NULL
+ */
+ manualBaseModel* getContour();
- wxContour_Grid * _gridPanel;
+ /**
+ * Returns the Path of the data persistence file
+ */
+ std::string GetFileLocation();
- wxContour_DrawToolsPanel * _drawToolsPanel;
+ /**
+ * Assign a new path to the data persistence file
+ @ param newFileLocation New path of the file
+ */
+ void SetFileLocation(std::string newFileLocation);
+//------------------------------------------------------------------------------------------------------------
- wxContour_OperationsToolsPanel * _operationsToolsPanel;
+ void SetScalarRange(int grayRangeMin, int grayRangeMax);
- wxContour_AutomaticFormsToolsPanel * _autoFormsPanel;
+//------------------------------------------------------------------------------------------------------------
- wxContour_StandardToolsPanel *_standardToolsPanel;
+private:
+ //------------------------------------------------------------------------------------------------------------
+ // Private methods
+ //------------------------------------------------------------------------------------------------------------
- wxContour_EdtionToolsPanel * _editionToolsPanel;
- wxContour_ListViewPanel * _listViewPanel;
+ //------------------------------------------------------------------------------------------------------------
+ // Attributtes
+ //------------------------------------------------------------------------------------------------------------
- wxVtkBaseView_SceneManager * _sceneManager;
+ int _contourGroup;
+ static wxContourMainFrame *instance;
+ KernelManagerContour *kernelManager;
+ interfMainPanel *_pannew;
+ PerformingOperation *_performingOperation;
+ std::string _datadir;
+ wxContourViewPanel *_theViewPanel;
+ wxInstantChooserPanel *_instantPanel;
+
+ //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
+ manualLineControler *_refLineControl;
+ manualContourModelLine *_refLineModel;
+ manualViewLine *_refLineView;
+
+ wxAuiManager m_mgr;
+ wxAuiNotebook *notebook;
+ long m_notebook_style;
+ long m_notebook_theme;
+ int _numberOfVariablesStatistics;
+
+ // Contour Image Mask
+ ThresholdImageView *_viewMaskImage;
+ ThresholdImageViewPanel *_viewMaskImagePanel;
+
+ // Threshold Image
+ ThresholdImageView *_viewThresholdImage;
+ ThresholdImageViewPanel *_viewThresholdImagePanel;
+
+ // Color Layer Image
+ ColorLayerImageView *_viewColorLayerImage;
+ ColorLayerImageViewPanel *_viewColorLayerImagePanel;
+ std::vector<vtkImageData*> _images;
+ bool _actorPresent;
+
+ // temporary variables readding .roi file
+ int _tmpReadFileImageDim[3];
+ double _tmpReadFileImageSpac[3];
+ int _tmpReadFileTypeOfTransformation;
+ void readDimSpc(FILE *pFile, bool interactiveOption);
- Instant * _actualInstant;
/*DECLARE_CLASS(wxContourMainFrame)
// any class wishing to process wxWindows events must use this macro
DECLARE_EVENT_TABLE()*/
- bool _creatingContoursActive;
+ bool _creatingContoursActive;
+////////JCP 21 - 11 - 08
+ void createContour( int typeContour );
+ //manualContourModel * factoryManualContourModel(int typeContour);
+ manualBaseModel * factoryManualContourModel(wxPanel* panel);
+ ContourExtractData *_contourextractdata;
+
+ void saveState();
+ void loadState(std::string filename);
+
+// void loadContours( FILE *pFile, bool staticContour );
+
+ void saveFileWithContours( std::string filename );
+ void onLoadContours(std::string fileNameContourROI, bool interactiveInterface);
+
+ int inredo;
+ int inundo;
+ std::string stundoredo;
+ static char COPY;
+
+//CMRU 17-08-09-----------------------------------------------------------------------------------------------
+ wxWindow *infoWin2;
+ wxPanel *calibrationPanel;
+ wxPanel *calibrationPanelError;
+ double _onePixelSize;
+ std::string _imageLocation;
+ std::string _fileLocation;
+//------------------------------------------------------------------------------------------------------------
};
-#endif
+#endif
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff