#include "wxInstantChooserPanel.h"
#include "wxContourViewPanel.h"
-
-
//#include "ContourWorkspace.h"
#include "ContourExtractData.h"
#include "PerformingOperation.h"
+#include "manualLineControler.h"
+#include "manualContourModelLine.h"
+#include "manualViewLine.h"
+
+#include "ThresholdImageView.h"
+#include "ThresholdImageViewPanel.h"
//#include "ContourThing.h"
//#include "wxContour_ListViewPanel.h"
+//ITK
+#include "itkImage.h"
+#include "itkGeodesicActiveContourLevelSetImageFilter.h"
+
+#include "itkCurvatureAnisotropicDiffusionImageFilter.h"
+#include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
+#include "itkSigmoidImageFilter.h"
+#include "itkFastMarchingImageFilter.h"
+#include "itkRescaleIntensityImageFilter.h"
+#include "itkBinaryThresholdImageFilter.h"
+#include "itkZeroCrossingImageFilter.h"
+#include "itkCastImageFilter.h"
+#include "itkImageFileWriter.h"
+#include "itkImageToVTKImageFilter.h"
+#include "itkVTKImageToImageFilter.h"
+
+//VTK
+#include <vtkImageSeedConnectivity.h>
+#include <vtkImageMarchingCubes.h>
#include "vtkContourFilter.h"
+#include "vtkMarchingContourFilter.h"
#include "vtkPolyDataConnectivityFilter.h"
#include "vtkCleanPolyData.h"
#include "vtkImageReslice.h"
#include "vtkMetaImageWriter.h"
#include "vtkImageData.h"
+#include "vtkTransform.h"
+
+#include "vtkCamera.h"
+#include "vtkImageActor.h"
+#include <vtkImageMapToColors.h>
+#include <vtkLookupTable.h>
+#include <vtkCommand.h>
+
//#include "vtkMetaImageReader.h"
//------------------------------------------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------------
// Class definition
//------------------------------------------------------------------------------------------------------------
-
+class interfMainPanel;
class wxContourMainFrame : public wxPanel {
public:
wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
- wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="<void>");
+ wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
~wxContourMainFrame();
//------------------------------------------------------------------------------------------------------------
// Creational and initialization methods
//------------------------------------------------------------------------------------------------------------
- bool configurePanels(wxAuiNotebook * theNoteBook );
- void setNotebook( wxAuiNotebook * theNoteBook );
+ void setVectImages(std::vector<vtkImageData*> imgs);
+
+ bool configurePanels( );
+
+ bool addNewPanel(wxPanel* panel);
wxAuiNotebook * createNotebook();
void setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel );
-// void setButtonsBar( wxContour_ButtonsBar * theButtonsBar );
+ void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
-// void setGrid( wxContour_Grid * theGridPanel );
+ void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
-// void setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel );
+ void ShowToolsPanel(bool show);
-// void setOperationsToolsPanel( wxContour_OperationsToolsPanel * theDrawToolsPanel );
+// void setButtonsBar( wxContour_ButtonsBar * theButtonsBar );
+// void setGrid( wxContour_Grid * theGridPanel );
+// void setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel );
+// void setOperationsToolsPanel( wxContour_OperationsToolsPanel * theDrawToolsPanel );
// void setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel );
-
// void setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel );
-
// void setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel );
-
// void setListViewPanel( wxContour_ListViewPanel * theListViewPanel );
//------------------------------------------------------------------------------------------------------------
// Attributes getters and setters
//------------------------------------------------------------------------------------------------------------
- static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="<void>");
+ static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
static wxContourMainFrame* getInstance();
+ static void resetInstance();
+
//------------------------------------------------------------------------------------------------------------
// Other functional methods
//------------------------------------------------------------------------------------------------------------
void onCreateContourRectangle( );
void onCreateContourCircle( );
void onCreateContourLine( );
+ void onCreateContourPoints( );
+ void onCreateContourPolygon( );
void onCreateContourBullEye(wxPanel* pan);
/////////////////////////////////
void onDeleteContour();
std::string getNameWrapping(int i);
-
void updateInstantOutlines();
void updateInstantImageData();
void updateInstantAxes();
void onUndo();
void onRedo();
void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
+ void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
///////////////////////7
void onLoad();
void onSave();
-
- void openContours( FILE *pFile, bool staticContour );
+ void onImport();
+ void onTest();
+ void openContours( FILE *pFile, FILE *pFileData, int version, bool staticContour );
void RefreshInterface();
vtkImageData* getImageData();
void onSegmentationOneSlice(int isovalue,int sampling,int method);
-
+ void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
-
+ void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
-
- int GetImageDataSizeZ();
-
+ int GetImageDataSizeZ();
void GetImageDataRange(double *range);
-
void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
+ //AD
+ void referenceLine();
+ void refLineHide();
+ void refLineShow();
+ void refLineChangeWidth(int width);
+
+ //AD
void onMirror();
+
+
+//====================================================================================================
void showAxis(bool show);
std::vector<std::string> getOutlinesName(int slide);
- void onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ);
+ //
+ //
+ // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
+ //
+ void onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
- void onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup);
+ void onSaveResults(std::string directory,std::string namefile, std::string filename,
+ int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
void SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
- void SaveImageResult(std::string directory,std::string namefile, int typeContourGroup);
+
void onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
void onSnakePressed();
void saveFileWithContoursAutomatique();
+
+ void ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
+
+ wxPanel *getMaskImageViewPanel(wxWindow *parent);
+ void SetContourGroup(int contourGroup);
+ wxPanel *getThresholdImageViewPanel(wxWindow *parent);
+
+
+//CMRU 17-08-09-----------------------------------------------------------------------------------------------
+
+ /**
+ * Associates the String parameter with the contour
+ * @param label Label entered by the user
+ * @param manualBaseModel Currently selected contour
+ */
+ void onPrintLabel (wxString label, manualBaseModel* manualModel);
+
+ /**
+ * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
+ * @param manualBaseModel Currently selected contour
+ */
+ void onInsertCalculation(manualBaseModel* manualModel);
+
+ /**
+ * Assigns and returns the value of a pixel in millimeters
+ @ param value Measure of the pixel in millimeters
+ */
+ double onePixelSize(double value);
+
+ /**
+ * Returns the type of the currently selected contour
+ */
+ int getType();
+
+ /**
+ * Returns the size in pixels of the currently selected contour
+ */
+ double getContourSizeInPixels();
+
+ /**
+ * Returns the currently selected contour. If no contour is selected returns NULL
+ */
+ manualBaseModel* getContour();
+
+ /**
+ * Returns the Path of the data persistence file
+ */
+ std::string GetFileLocation();
+
+ /**
+ * Assign a new path to the data persistence file
+ @ param newFileLocation New path of the file
+ */
+ void SetFileLocation(std::string newFileLocation);
+//------------------------------------------------------------------------------------------------------------
+
+ void SetScalarRange(int grayRangeMin, int grayRangeMax);
+
+//------------------------------------------------------------------------------------------------------------
+
private:
//------------------------------------------------------------------------------------------------------------
// Private methods
//------------------------------------------------------------------------------------------------------------
// Attributtes
//------------------------------------------------------------------------------------------------------------
+
+ int _contourGroup;
+
static wxContourMainFrame* instance;
KernelManagerContour* kernelManager;
- wxContourViewPanel* _theViewPanel;
-
- wxInstantChooserPanel * _instantPanel;
-
+ interfMainPanel* _pannew;
- wxAuiManager m_mgr;
- /*
- wxArrayString m_perspectives;
- wxMenu* m_perspectives_menu;
- */
- long m_notebook_style;
- long m_notebook_theme;
- int _numberOfVariablesStatistics;
-
- //OutlineModelManager * _modelManager;
-
-
+ PerformingOperation* _performingOperation;
- //wxContour_ButtonsBar * _buttonsBar;
+ std::string _datadir;
- //wxContour_Grid * _gridPanel;
+ wxContourViewPanel* _theViewPanel;
- //wxContour_DrawToolsPanel * _drawToolsPanel;
+ wxInstantChooserPanel * _instantPanel;
- //wxContour_OperationsToolsPanel * _operationsToolsPanel;
+ //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
+ manualLineControler * _refLineControl;
+ manualContourModelLine * _refLineModel;
+ manualViewLine * _refLineView;
- //wxContour_AutomaticFormsToolsPanel * _autoFormsPanel;
- //wxContour_StandardToolsPanel *_standardToolsPanel;
- //wxContour_EdtionToolsPanel * _editionToolsPanel;
+ wxAuiManager m_mgr;
+ wxAuiNotebook * notebook;
- //wxContour_ListViewPanel * _listViewPanel;
+ long m_notebook_style;
+ long m_notebook_theme;
+ int _numberOfVariablesStatistics;
+
- //wxVtkBaseView_SceneManager * _sceneManager;
+ // Contour Image Mask
+ ThresholdImageView *_viewMaskImage;
+ ThresholdImageViewPanel *_viewMaskImagePanel;
+
+ // Threshold Image
+ ThresholdImageView *_viewThresholdImage;
+ ThresholdImageViewPanel *_viewThresholdImagePanel;
+
+
+ std::vector<vtkImageData*> _images;
- //Instant * _actualInstant;
+ bool _actorPresent;
+
+
/*DECLARE_CLASS(wxContourMainFrame)
// any class wishing to process wxWindows events must use this macro
//manualContourModel * factoryManualContourModel(int typeContour);
- manualContourModel * factoryManualContourModel(wxPanel* panel);
-
-
+ manualBaseModel * factoryManualContourModel(wxPanel* panel);
+
+ ContourExtractData *_contourextractdata;
+
void saveState();
void loadState(std::string filename);
+ void loadContours( FILE *pFile, bool staticContour );
void saveFileWithContours( std::string filename );
+ void onLoadContours(std::string fileNameContourROI);
int inredo;
int inundo;
std::string stundoredo;
-
-
- //wxContourViewPanel* _viewPan;
- PerformingOperation* _performingOperation;
static char COPY;
+//CMRU 17-08-09-----------------------------------------------------------------------------------------------
+ wxWindow *infoWin2;
+ wxPanel *calibrationPanel;
+ wxPanel *calibrationPanelError;
+ double _onePixelSize;
+ std::string _imageLocation;
+ std::string _fileLocation;
+//------------------------------------------------------------------------------------------------------------
+
};
#endif
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff