#include <cpPlugins/Interface/Image.h>
#include <itkImageFileReader.h>
+#include <itkImageSeriesReader.h>
#define ITK_MANUAL_INSTANTIATION
#include <itkImage.h>
this->SetNumberOfOutputs( 1 );
this->_MakeOutput< cpPlugins::Interface::Image >( 0 );
- this->m_DefaultParameters[ "FileName" ] =
- TParameter( "string", "no_file_name" );
- this->m_DefaultParameters[ "PixelType" ] = TParameter( "type", "uchar" );
- this->m_DefaultParameters[ "ImageDimension" ] = TParameter( "int", "2" );
- this->m_DefaultParameters[ "IsColorImage" ] = TParameter( "bool", "0" );
+ using namespace cpPlugins::Interface;
+ this->m_DefaultParameters.Configure( Parameters::StringList, "FileNames" );
+ this->m_DefaultParameters.Configure( Parameters::String, "PixelType" );
+ this->m_DefaultParameters.Configure( Parameters::Uint, "Dimension" );
+ this->m_DefaultParameters.Configure( Parameters::Uint, "IsColorImage" );
+ this->m_DefaultParameters.SetValueAsString( "PixelType", "uchar" );
+ this->m_DefaultParameters.SetValueAsUint( "Dimension", 3 );
+ this->m_DefaultParameters.SetValueAsUint( "IsColorImage", 0 );
+ this->m_Parameters = this->m_DefaultParameters;
}
// -------------------------------------------------------------------------
std::string cpPlugins::Plugins::ImageReader::
_GenerateData( )
{
- TParameters::const_iterator dIt;
-
- // Get image dimension
- dIt = this->m_Parameters.find( "ImageDimension" );
- if( dIt == this->m_Parameters.end( ) )
- dIt = this->m_DefaultParameters.find( "ImageDimension" );
-
+ using namespace cpPlugins::Interface;
+ Parameters::TUint dim = this->m_Parameters.GetValueAsUint( "Dimension" );
std::string r = "cpPlugins::Plugins::ImageReader: itk::Image dimension not supported.";
- if ( dIt->second.second == "1" ) r = this->_GD0< 1 >( );
- else if( dIt->second.second == "2" ) r = this->_GD0< 2 >( );
- else if( dIt->second.second == "3" ) r = this->_GD0< 3 >( );
- else if( dIt->second.second == "4" ) r = this->_GD0< 4 >( );
+ if ( dim == 1 ) r = this->_GD0< 1 >( );
+ else if( dim == 2 ) r = this->_GD0< 2 >( );
+ else if( dim == 3 ) r = this->_GD0< 3 >( );
+ else if( dim == 4 ) r = this->_GD0< 4 >( );
return( r );
}
std::string cpPlugins::Plugins::ImageReader::
_GD0( )
{
- TParameters::const_iterator tIt, cIt;
-
- // Get image pixel type
- tIt = this->m_Parameters.find( "PixelType" );
- if( tIt == this->m_Parameters.end( ) )
- tIt = this->m_DefaultParameters.find( "PixelType" );
- cIt = this->m_Parameters.find( "IsColorImage" );
- if( cIt == this->m_Parameters.end( ) )
- cIt = this->m_DefaultParameters.find( "IsColorImage" );
+ using namespace cpPlugins::Interface;
+ Parameters::TString pt = this->m_Parameters.GetValueAsString( "PixelType" );
+ Parameters::TUint ci = this->m_Parameters.GetValueAsUint( "IsColorImage" );
std::string r = "cpPlugins::Plugins::ImageReader: itk::Image pixel type not supported";
- if( cIt->second.second == "0" )
+ if( ci == 0 )
{
- if( tIt->second.second == "char" )
+ if( pt == "char" )
r = this->_GD1< char, D >( );
- else if( tIt->second.second == "short" )
+ else if( pt == "short" )
r = this->_GD1< short, D >( );
- else if( tIt->second.second == "int" )
+ else if( pt == "int" )
r = this->_GD1< int, D >( );
- else if( tIt->second.second == "long" )
+ else if( pt == "long" )
r = this->_GD1< long, D >( );
- else if( tIt->second.second == "uchar" )
+ else if( pt == "uchar" )
r = this->_GD1< unsigned char, D >( );
- else if( tIt->second.second == "ushort" )
+ else if( pt == "ushort" )
r = this->_GD1< unsigned short, D >( );
- else if( tIt->second.second == "uint" )
+ else if( pt == "uint" )
r = this->_GD1< unsigned int, D >( );
- else if( tIt->second.second == "ulong" )
+ else if( pt == "ulong" )
r = this->_GD1< unsigned long, D >( );
- else if( tIt->second.second == "float" )
+ else if( pt == "float" )
r = this->_GD1< float, D >( );
- else if( tIt->second.second == "double" )
+ else if( pt == "double" )
r = this->_GD1< double, D >( );
}
- else if( cIt->second.second == "1" )
+ else
{
- if( tIt->second.second == "char" )
+ if( pt == "char" )
r = this->_GD1< itk::RGBPixel< char >, D >( );
- else if( tIt->second.second == "short" )
+ else if( pt == "short" )
r = this->_GD1< itk::RGBPixel< short >, D >( );
- else if( tIt->second.second == "int" )
+ else if( pt == "int" )
r = this->_GD1< itk::RGBPixel< int >, D >( );
- else if( tIt->second.second == "long" )
+ else if( pt == "long" )
r = this->_GD1< itk::RGBPixel< long >, D >( );
- else if( tIt->second.second == "uchar" )
+ else if( pt == "uchar" )
r = this->_GD1< itk::RGBPixel< unsigned char >, D >( );
- else if( tIt->second.second == "ushort" )
+ else if( pt == "ushort" )
r = this->_GD1< itk::RGBPixel< unsigned short >, D >( );
- else if( tIt->second.second == "uint" )
+ else if( pt == "uint" )
r = this->_GD1< itk::RGBPixel< unsigned int >, D >( );
- else if( tIt->second.second == "ulong" )
+ else if( pt == "ulong" )
r = this->_GD1< itk::RGBPixel< unsigned long >, D >( );
- else if( tIt->second.second == "float" )
+ else if( pt == "float" )
r = this->_GD1< itk::RGBPixel< float >, D >( );
- else if( tIt->second.second == "double" )
+ else if( pt == "double" )
r = this->_GD1< itk::RGBPixel< double >, D >( );
} // fi
return( r );
std::string cpPlugins::Plugins::ImageReader::
_GD1( )
{
- TParameters::const_iterator fIt;
-
- // Get filename
- fIt = this->m_Parameters.find( "FileName" );
- if( fIt == this->m_Parameters.end( ) )
- fIt = this->m_DefaultParameters.find( "FileName" );
-
typedef itk::Image< P, D > _TImage;
- typedef itk::ImageFileReader< _TImage > _TReader;
- _TReader* reader =
- dynamic_cast< _TReader* >( this->m_RealProcessObject.GetPointer( ) );
- if( reader == NULL )
- {
- this->m_RealProcessObject = _TReader::New( );
- reader =
- dynamic_cast< _TReader* >( this->m_RealProcessObject.GetPointer( ) );
+ // Get filenames
+ using namespace cpPlugins::Interface;
+ std::vector< Parameters::TString > unordered_names;
+ this->m_Parameters.GetValueAsStringList( unordered_names, "FileNames" );
- } // fi
- reader->SetFileName( fIt->second.second );
- try
+ if( unordered_names.size( ) == 1 )
{
- reader->Update( );
+ // Read single image
+ typedef itk::ImageFileReader< _TImage > _TSingleReader;
+
+ _TSingleReader* singleReader =
+ dynamic_cast< _TSingleReader* >(
+ this->m_RealProcessObject.GetPointer( )
+ );
+ if( singleReader == NULL )
+ {
+ this->m_RealProcessObject = _TSingleReader::New( );
+ singleReader =
+ dynamic_cast< _TSingleReader* >(
+ this->m_RealProcessObject.GetPointer( )
+ );
+
+ } // fi
+ singleReader->SetFileName( unordered_names.front( ) );
+ try
+ {
+ singleReader->Update( );
+ }
+ catch( itk::ExceptionObject& err )
+ {
+ return( err.GetDescription( ) );
+
+ } // yrt
+ this->_SetOutput( 0, singleReader->GetOutput( ) );
+ return( "" );
}
- catch( itk::ExceptionObject& err )
+ else if( unordered_names.size( ) > 1 )
{
- return( err.GetDescription( ) );
-
- } // yrt
- this->_SetOutput( 0, reader->GetOutput( ) );
- return( "" );
+ // Read image series
+ std::set< std::string > ordered_names;
+ for( unsigned int i = 0; i < unordered_names.size( ); ++i )
+ ordered_names.insert( unordered_names[ i ] );
+
+ typedef itk::ImageSeriesReader< _TImage > _TMultiReader;
+ _TMultiReader* multiReader =
+ dynamic_cast< _TMultiReader* >(
+ this->m_RealProcessObject.GetPointer( )
+ );
+ if( multiReader == NULL )
+ {
+ this->m_RealProcessObject = _TMultiReader::New( );
+ multiReader =
+ dynamic_cast< _TMultiReader* >(
+ this->m_RealProcessObject.GetPointer( )
+ );
+
+ } // fi
+ std::set< std::string >::const_iterator fnIt = ordered_names.begin( );
+ for( ; fnIt != ordered_names.end( ); ++fnIt )
+ multiReader->AddFileName( *fnIt );
+ try
+ {
+ multiReader->Update( );
+ }
+ catch( itk::ExceptionObject& err )
+ {
+ return( err.GetDescription( ) );
+
+ } // yrt
+ this->_SetOutput( 0, multiReader->GetOutput( ) );
+ return( "" );
+ }
+ else
+ return( "No image filename(s) given." );
}
// eof - $RCSfile$
git://git.creatis.insa-lyon.fr / cpPlugins.git / blobdiff