#include <set>
#include <itkConceptChecking.h>
#include <itkFunctionBase.h>
+#include <ivq/ITK/PeakDetector.h>
+#include <fpa/Config.h>
#include <fpa/Base/Functors/RegionGrow/BinaryThreshold.h>
namespace fpa
typedef itk::SmartPointer< Self > Pointer;
typedef itk::SmartPointer< const Self > ConstPointer;
- typedef typename _TAlgorithm::TNode TNode;
- typedef typename _TAlgorithm::TNodes TNodes;
- typedef typename _TAlgorithm::TInputValue TInputValue;
- typedef typename _TAlgorithm::TOutputValue TOutputValue;
- typedef typename _TAlgorithm::TFrontId TFrontId;
- typedef typename _TAlgorithm::TVertex TVertex;
+ typedef typename _TAlgorithm::TTraits TTraits;
+ fpa_Base_TraitTypes( typename TTraits );
typedef std::deque< TNode > TQueue;
typedef std::set< TInputValue > TThresholds;
+
+ typedef ivq::ITK::PeakDetector TPeakDetector;
+ typedef TPeakDetector::TPeak TPeak;
+
typedef fpa::Base::Functors::RegionGrow::BinaryThreshold< TInputValue > TPredicate;
public:
itkGetConstMacro( InsideValue, TOutputValue );
itkSetMacro( InsideValue, TOutputValue );
+ itkGetConstMacro( MinimumThreshold, TInputValue );
+ itkSetMacro( MinimumThreshold, TInputValue );
+
public:
virtual itk::ModifiedTimeType GetMTime( ) const override;
TOutputValue GetOutsideValue( ) const;
void SetOutsideValue( const TOutputValue& v );
+ unsigned long GetSignalKernelSize( ) const;
+ double GetSignalThreshold( ) const;
+ double GetSignalInfluence( ) const;
+
+ void SetSignalKernelSize( unsigned long k );
+ void SetSignalThreshold( double t );
+ void SetSignalInfluence( double i );
+
void ClearThresholds( );
void AddThreshold( const TInputValue& thr );
void SetThresholds(
const TInputValue& init,
const TInputValue& end,
- unsigned long number_of_thresholds
+ const TInputValue& delta
);
+ const TThresholds& GetThresholds( ) const;
+ unsigned long GetNumberOfEvaluatedThresholds( ) const;
+ TInputValue GetOptimumThreshold( ) const;
+ void GetSignalValues(
+ unsigned long i, double& x, double& y, TPeak& p
+ ) const;
protected:
Mori( );
virtual ~Mori( );
virtual void _BeforeGenerateData( ) override;
- virtual void _AfterGenerateData( ) override;
- virtual TOutputValue _ComputeOutputValue( const TNode& n ) override;
+ virtual void _FinishOneLoop( ) override;
+ virtual void _ComputeOutputValue( TNode& n ) override;
+ virtual void _UpdateOutputValue( TNode& n ) override;
virtual void _QueueClear( ) override;
virtual TNode _QueuePop( ) override;
virtual void _QueuePush( const TNode& node ) override;
protected:
typename TPredicate::Pointer m_Predicate;
- TThresholds m_Thresholds;
- TQueue m_Queues[ 2 ];
- unsigned int m_CurrentQueue;
TOutputValue m_InsideValue;
+ TInputValue m_MinimumThreshold;
+ TThresholds m_Thresholds;
+ typename TThresholds::const_iterator m_CurrThr;
+
+ TQueue m_Queues[ 2 ];
+ unsigned int m_CurrQueue;
+ double m_CurrCount;
+
+ TPeakDetector m_PeakDetector;
};
} // ecapseman