+// =========================================================================
+// @author Leonardo Florez Valencia
+// @email florez-l@javeriana.edu.co
+// =========================================================================
+
#ifndef __fpa__Image__Algorithm__hxx__
#define __fpa__Image__Algorithm__hxx__
-// Send Piotr's code to Anna
+// -------------------------------------------------------------------------
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+typename
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+TMarks*
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+GetMarks( )
+{
+ return(
+ dynamic_cast< TMarks* >(
+ this->itk::ProcessObject::GetOutput( this->m_MarksIdx )
+ )
+ );
+}
-#include <itkImage.h>
-#include <fpa/Image/Functors/SimpleNeighborhood.h>
+// -------------------------------------------------------------------------
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+const typename
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+TMarks*
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+GetMarks( ) const
+{
+ return(
+ dynamic_cast< const TMarks* >(
+ this->itk::ProcessObject::GetOutput( this->m_MarksIdx )
+ )
+ );
+}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
Algorithm( )
- : Superclass( )
+ : Superclass( ),
+ m_NeigborhoodOrder( 1 )
{
- typedef fpa::Image::Functors::SimpleNeighborhood< _TInputImage::ImageDimension > _TNeigh;
- typedef itk::Image< TFrontId, _TInputImage::ImageDimension > _TMarks;
-
this->m_MarksIdx = this->GetNumberOfRequiredOutputs( );
this->itk::ProcessObject::SetNumberOfRequiredOutputs( this->m_MarksIdx + 1 );
- typename _TMarks::Pointer marks = _TMarks::New( );
- this->SetNthOutput( this->m_MarksIdx, marks );
-
- typename _TNeigh::Pointer neigh = _TNeigh::New( );
- this->SetNeighborhoodFunction( neigh );
+ this->SetNthOutput( this->m_MarksIdx, TMarks::New( ) );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
~Algorithm( )
{
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-void fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_BeforeGenerateData( )
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+typename
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+TNodes fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_UnifySeeds( )
{
- this->Superclass::_BeforeGenerateData( );
- this->AllocateOutputs( );
-
- TNeighborhoodFunction* neighFunc =
- dynamic_cast< TNeighborhoodFunction* >(
- this->GetNeighborhoodFunction( )
- );
- if( neighFunc == NULL )
- itkExceptionMacro( << "NeighborhoodFunction not well defined." );
- neighFunc->SetImage( this->GetInput( ) );
-
- TVertexFunction* vertexFunc =
- dynamic_cast< TVertexFunction* >(
- this->GetVertexFunction( )
- );
- if( vertexFunc != NULL )
- vertexFunc->SetImage( this->GetInput( ) );
+ const TInputImage* input = this->GetInput( );
+ typename TInputImage::RegionType region = input->GetRequestedRegion( );
+ TSeeds seeds = this->GetSeeds( );
+ TNodes nodes;
+
+ typename TSeeds::iterator sIt = seeds.begin( );
+ for( ; sIt != seeds.end( ); ++sIt )
+ {
+ TNode node;
+ if( sIt->IsPoint )
+ input->TransformPhysicalPointToIndex( sIt->Point, sIt->Vertex );
+ else
+ input->TransformIndexToPhysicalPoint( sIt->Vertex, sIt->Point );
+ if( region.IsInside( sIt->Vertex ) )
+ {
+ sIt->IsUnified = true;
+ node.Vertex = sIt->Vertex;
+ node.Parent = node.Vertex;
+ if( sIt->FrontId == 0 )
+ node.FrontId = nodes.size( ) + 1;
+ else
+ node.FrontId = sIt->FrontId;
+ nodes.insert( node );
+ }
+ else
+ sIt->IsUnified = false;
+
+ } // rof
+
+ return( nodes );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-void fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_InitMarks( )
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+void
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_ConfigureOutput( const TOutputValue& v )
{
- typedef itk::Image< TFrontId, _TInputImage::ImageDimension > _TMarks;
- _TMarks* marks =
- dynamic_cast< _TMarks* >(
- this->itk::ProcessObject::GetOutput( this->m_MarksIdx )
- );
- marks->FillBuffer( 0 );
+ const TInputImage* in = this->GetInput( );
+
+ TOutputImage* out = this->GetOutput( );
+ out->SetLargestPossibleRegion( in->GetLargestPossibleRegion( ) );
+ out->SetRequestedRegion( in->GetRequestedRegion( ) );
+ out->SetBufferedRegion( in->GetBufferedRegion( ) );
+ out->SetSpacing( in->GetSpacing( ) );
+ out->SetOrigin( in->GetOrigin( ) );
+ out->SetDirection( in->GetDirection( ) );
+ out->Allocate( );
+ out->FillBuffer( v );
+
+ TMarks* marks = this->GetMarks( );
+ marks->SetLargestPossibleRegion( in->GetLargestPossibleRegion( ) );
+ marks->SetRequestedRegion( in->GetRequestedRegion( ) );
+ marks->SetBufferedRegion( in->GetBufferedRegion( ) );
+ marks->SetSpacing( in->GetSpacing( ) );
+ marks->SetOrigin( in->GetOrigin( ) );
+ marks->SetDirection( in->GetDirection( ) );
+ marks->Allocate( );
+ marks->FillBuffer( TFrontId( 0 ) );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-void fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_InitResults( const TOutput& init_value )
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+typename
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+TNeighborhood fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_GetNeighbors( const TVertex& v ) const
{
- this->GetOutput( )->FillBuffer( init_value );
+ typename TInputImage::RegionType region =
+ this->GetInput( )->GetRequestedRegion( );
+ TNeighborhood neighborhood;
+ if( this->m_NeigborhoodOrder != 1 )
+ {
+ // TODO
+ }
+ else
+ {
+ for( unsigned int d = 0; d < TInputImage::ImageDimension; ++d )
+ {
+ for( int s = -1; s <= 1; s += 2 )
+ {
+ TVertex n = v;
+ n[ d ] += s;
+ if( region.IsInside( n ) )
+ neighborhood.push_back( n );
+
+ } // rof
+
+ } // rof
+
+ } // fi
+ return( neighborhood );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-bool fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_IsMarked( const TVertex& v ) const
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+typename
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+TInputValue
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_GetInputValue( const TVertex& v ) const
{
- typedef itk::Image< TFrontId, _TInputImage::ImageDimension > _TMarks;
- const _TMarks* marks =
- dynamic_cast< const _TMarks* >(
- this->itk::ProcessObject::GetOutput( this->m_MarksIdx )
- );
- return( marks->GetPixel( v ) != 0 );
+ return( this->GetInput( )->GetPixel( v ) );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-void fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_Mark( const _TQueueNode& n )
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+typename
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+TOutputValue fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_GetOutputValue( const TVertex& v ) const
{
- typedef itk::Image< TFrontId, _TInputImage::ImageDimension > _TMarks;
- _TMarks* marks =
- dynamic_cast< _TMarks* >(
- this->itk::ProcessObject::GetOutput( this->m_MarksIdx )
- );
- marks->SetPixel( n.Vertex, n.FrontId );
+ return( this->GetOutput( )->GetPixel( v ) );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-typename fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-TFrontId fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_GetMark( const TVertex& v ) const
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+void
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_UpdateOutputValue( const TNode& n )
{
- typedef itk::Image< TFrontId, _TInputImage::ImageDimension > _TMarks;
- const _TMarks* marks =
- dynamic_cast< const _TMarks* >(
- this->itk::ProcessObject::GetOutput( this->m_MarksIdx )
- );
- return( marks->GetPixel( v ) );
+ this->GetOutput( )->SetPixel( n.Vertex, n.Value );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-void fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_UpdateResult( const _TQueueNode& n )
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+bool
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_IsMarked( const TVertex& v ) const
{
- this->GetOutput( )->SetPixel( n.Vertex, n.Result );
+ return( this->GetMarks( )->GetPixel( v ) > 0 );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-typename fpa::Image::Algorithm< _TInputImage, _TOutputImage >::TOutput
-fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_GetResult( const TVertex& v ) const
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+unsigned long
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_GetMark( const TVertex& v ) const
{
- if( this->GetOutput( )->GetLargestPossibleRegion( ).IsInside( v ) )
- return( this->GetOutput( )->GetPixel( v ) );
- else
- return( this->m_InitResult );
+ return( ( unsigned long )( this->GetMarks( )->GetPixel( v ) ) );
}
// -------------------------------------------------------------------------
-template< class _TInputImage, class _TOutputImage >
-unsigned int fpa::Image::Algorithm< _TInputImage, _TOutputImage >::
-_GetNumberOfDimensions( ) const
+template< class _TInputImage, class _TOutputImage, class _TMarksInterface, class _TSeedsInterface >
+bool
+fpa::Image::Algorithm< _TInputImage, _TOutputImage, _TMarksInterface, _TSeedsInterface >::
+_Mark( const TVertex& v, unsigned long frontId )
{
- return( _TInputImage::ImageDimension );
+ this->GetMarks( )->SetPixel( v, TFrontId( frontId ) );
+ return( true );
}
#endif // __fpa__Image__Algorithm__hxx__
git://git.creatis.insa-lyon.fr / FrontAlgorithms.git / blobdiff