+/*# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+# pour la Sant�)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+# This software is governed by the CeCILL-B license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL-B
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+# or in the file LICENSE.txt.
+#
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
+
//----------------------------------------------------------------------------------------------------------------
// Class definition include
#include "KernelManagerContour.h"
-KernelManagerContour::KernelManagerContour(){
-
-
+KernelManagerContour::KernelManagerContour()
+{
/**THIS ALL SHOULD BE IN AN OTHER LIB CALLED PERSISTANCE
**
**/
- inredo = 0;
- inundo = 0;
-
+ inredo = 0;
+ inundo = 0;
time_t seconds;
- seconds = time (NULL);
- int time = seconds;
-
-
- stundoredo = "data/temp"+intToString(time);
- _currentIndex = 0;
-
+ seconds = time (NULL);
+ int time = seconds;
+ stundoredo = "data/temp"+intToString(time);
+ _currentIndex = 0;
_contourPropagation = NULL;
#if(WIN32)
mkdir(stundoredo.c_str());
/**
** FINISH PERSISTANCE
**/
-
}
+
KernelManagerContour::KernelManagerContour(std::vector<vtkImageData*> images,std::string datadir,std::string tmpdir)
{
-
-
/**THIS ALL SHOULD BE IN AN OTHER LIB CALLED PERSISTANCE
**
**/
- inredo = 0;
- inundo = 0;
-
+ inredo = 0;
+ inundo = 0;
time_t seconds;
- seconds = time (NULL);
- int time = seconds;
-
-
+ seconds = time (NULL);
+ int time = seconds;
stundoredo = tmpdir+"/temp"+intToString(time);
_currentIndex = 0;
-
_contourPropagation = NULL;
#if(WIN32)
mkdir(tmpdir.c_str());
/**
** FINISH PERSISTANCE
**/
- setVectImages(images);
+ setVectImages(images);
initializeEnvironment(datadir);
-
}
-KernelManagerContour::~KernelManagerContour(){
+
+KernelManagerContour::~KernelManagerContour()
+{
}
-std::vector<vtkImageData*> KernelManagerContour::getVectImages(){
+std::vector<vtkImageData*> KernelManagerContour::getVectImages()
+{
return vectimages;
}
-void KernelManagerContour::setVectImages(std::vector<vtkImageData*> vectimg){
- for(int i = 0; i < (int)(vectimg.size()); i++){
+
+void KernelManagerContour::setVectImages(std::vector<vtkImageData*> vectimg)
+{
+ double spc[3];
+ std::vector<double> vectspc;
+ for(int i = 0; i < (int)(vectimg.size()); i++)
+ {
vtkImageData* img = vectimg[i];
vtkImageChangeInformation* change = vtkImageChangeInformation::New();
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
change->SetInformationInput(img);
change->SetInputConnection(img->GetProducerPort());
-
+#else
+ change->SetInputData(img);
+#endif
+ img->GetSpacing(spc);
change->SetOutputSpacing(1,1,1);
-
+//EED 18 fev 2014
+ change->SetOutputOrigin (0, 0, 0);
change->Update();
-
+ vectspc.clear();
+ vectspc.push_back(spc[0]);
+ vectspc.push_back(spc[1]);
+ vectspc.push_back(spc[2]);
+ vectimagesSpacing.push_back(vectspc);
vectimg[i] = change->GetOutput();
- }
-
+ } // for i
vectimages = vectimg;
}
-void KernelManagerContour::initializeEnvironment(std::string datadir){
+void KernelManagerContour::GetSpacing(double *vecspc, int iImage)
+{
+ vecspc[0]=vectimagesSpacing[iImage][0];
+ vecspc[1]=vectimagesSpacing[iImage][1];
+ vecspc[2]=vectimagesSpacing[iImage][2];
+}
+
+void KernelManagerContour::initializeEnvironment(std::string datadir)
+{
_datadir = datadir;
std::string conceptsFN = datadir+"holaConceptsFile.cf";
std::string imageSourcesFN = datadir+"holaImagesInstantsFile.of";
std::map<std::string, AxeThing *>* axesMap = new std::map<std::string, AxeThing *>();
std::map<std::string, ContourThing *>* outlinesMap = new std::map<std::string, ContourThing *>();
- for(int i = 0; i < (int)(vectimages.size()); i++){
+ for(int i = 0; i < (int)(vectimages.size()); i++)
+ {
vtkImageData* selectedimage = vectimages[i];
- ImageSourceThing * thing = new ImageSourceThing(selectedimage);
+ ImageSourceThing * thing = new ImageSourceThing(selectedimage);
std::string imgstring = "Source Image "+intToString(i+1);
sourcesMap->insert(std::pair<std::string, ImageSourceThing *>( imgstring, thing));
- }
-
+ } // for
OutlineModelBuilder * _builder = new OutlineModelBuilder( conceptsFN ,datadir);
_builder->buildImageSource_Envornment( imageSourcesFN, sourcesMap );
_builder->buildImageSection_Envornment( imageSectionsFN, sectionsMap );
_builder->buildAxe_Envornment(axeThingsFN, axesMap );
_builder->buildCountour_Envornment( imageSectionsFN, outlinesMap );
-
//Creating the objects to manage
modelManager = new OutlineModelManager( _builder->getImSourceEnv(), _builder->getImSectionEnv(), _builder->getAxesEnv(), _builder->getContourEnv() );
-
imageSource = modelManager->getImageSourceThingByKeyName( "Source Image 1" );
-
}
-vtkImageData* KernelManagerContour::getSourceImage(){
+
+vtkImageData* KernelManagerContour::getSourceImage()
+{
return imageSource->getSourceImage();
}
-OutlineModelManager* KernelManagerContour::getOutlineModelManager(){
+
+OutlineModelManager* KernelManagerContour::getOutlineModelManager()
+{
return modelManager;
}
-std::string KernelManagerContour::createOutline(manualBaseModel * manModelContour,std::vector<int> instantVector){
+std::string KernelManagerContour::createOutline(manualBaseModel * manModelContour,std::vector<int> instantVector)
+{
return modelManager->createOutline( manModelContour, instantVector );
}
-std::string KernelManagerContour::intToString(int num){
+std::string KernelManagerContour::intToString(int num)
+{
std::string result;
- if(num == 0){
+ if(num == 0)
+ {
result = "0";
}else{
int k=num;
- while (k > 0){
+ while (k > 0)
+ {
char temp = k % 10 + 48;
k = k / 10;
result = temp + result;
- }
- }
+ } // while
+ } // if num
return result;
}
-std::vector<std::string> KernelManagerContour::GetLstNameThingsStatic(){
+std::vector<std::string> KernelManagerContour::GetLstNameThingsStatic()
+{
return modelManager->GetLstNameThingsStatic();
}
-void KernelManagerContour::SaveThingName(FILE* pFile, FILE *pFileData, std::string name ){
+void KernelManagerContour::SaveThingName(FILE* pFile, FILE *pFileData, std::string name )
+{
modelManager->SaveThingName(pFile, pFileData, name);
}
-std::vector<std::string> KernelManagerContour::GetLstNameThings(){
+
+std::vector<std::string> KernelManagerContour::GetLstNameThings()
+{
return modelManager->GetLstNameThings();
}
+
//int KernelManagerContour::IsPartOfStaticList(std::string keyName ){
// return modelManager->IsPartOfStaticList(keyName);
//}
-bool KernelManagerContour::IsPartOfStaticList(std::string theKeyName){
+bool KernelManagerContour::IsPartOfStaticList(std::string theKeyName)
+{
return modelManager->IsPartOfStaticList(theKeyName) == -1;
}
-void KernelManagerContour::deleteCModel(std::string theKeyName){
+void KernelManagerContour::deleteCModel(std::string theKeyName)
+{
manualBaseModel* cModel = modelManager->getOutlineByKeyName(theKeyName)->getModel();
modelManager->removeOutline( theKeyName );
-
delete cModel;
}
-void KernelManagerContour::removeAllOutlines(){
+void KernelManagerContour::removeAllOutlines()
+{
modelManager->removeAllOutlines();
}
-std::vector<NameWrapper *> KernelManagerContour::getActualInstantOutlines(){
+std::vector<NameWrapper *> KernelManagerContour::getActualInstantOutlines()
+{
return modelManager->getActualInstantOutlines();
}
-int KernelManagerContour::getNamesWrappingSize(){
+int KernelManagerContour::getNamesWrappingSize()
+{
return getActualInstantOutlines().size();
}
-std::string KernelManagerContour::getNameWrapping(int i){
+std::string KernelManagerContour::getNameWrapping(int i)
+{
return getActualInstantOutlines()[i]->getKeyName();
}
-void KernelManagerContour::setInstant(Instant * theInstant){
+void KernelManagerContour::setInstant(Instant * theInstant)
+{
modelManager->setInstant(theInstant);
//_actualInstant = theInstant;
}
-Instant * KernelManagerContour::getCurrentInstant(){
+Instant * KernelManagerContour::getCurrentInstant()
+{
return modelManager->getInstant();
}
-void KernelManagerContour::setInstant(std::vector<int> vectInstant){
+
+void KernelManagerContour::setInstant(std::vector<int> vectInstant)
+{
Instant* act = new Instant ( &vectInstant );
modelManager->setInstant(act);
}
return modelManager->getOutlineByKeyName (cloneName )->getModel();
}
-bool KernelManagerContour::onRedo(std::string& filename){
- if(inredo > 0){
+bool KernelManagerContour::onRedo(std::string& filename)
+{
+ if(inredo > 0)
+ {
inredo--;
inundo++;
std::string str = intToString(inundo);
filename = stundoredo + str + ".roi";
//loadState(temp);
return true;
- }
+ } // inredo
return false;
}
-bool KernelManagerContour::onUndo(std::string& filename){
- if(inundo>0){
+bool KernelManagerContour::onUndo(std::string& filename)
+{
+ if(inundo>0)
+ {
inredo++;
inundo--;
-
//char str[9000];
//itoa(inundo, str, 10);
std::string str = intToString(inundo);
-
-
filename = stundoredo + str + ".roi";
-
return true;//loadState(temp);
}
return false;
}
-std::string KernelManagerContour::saveState(){
+std::string KernelManagerContour::saveState()
+{
inredo=0;
std::string str = intToString(inundo);
std::string temp = stundoredo + str + ".roi";
return temp;
}
-bool KernelManagerContour::onUndoSaveFile(std::string& filename){
- if(inundo>0){
- if(inredo==0){
-
+bool KernelManagerContour::onUndoSaveFile(std::string& filename)
+{
+ if(inundo>0)
+ {
+ if(inredo==0)
+ {
//char str[9000];
//itoa(inundo, str, 10);
std::string str = intToString(inundo);
-
filename = stundoredo + str + ".roi";
return true;
//saveFileWithContours(temp);
-
- }
- }
+ } // if inundo ==0
+ } // if inundo > 0
return false;
}
{
_contourPropagation = new ContourPropagation();
}
-
- if (vecX->size()!=0){
-
+ if (vecX->size()!=0)
+ {
int i,size=vecZ->size();
int actualSlice = instants[1];
for ( i=0 ; i<size ; i++ )
{
(*vecZ)[i] = actualSlice;
} // for
-
_contourPropagation->appendContour(vecX , vecY , vecZ);
return intToString(actualSlice);
}
return "";
}
-
void KernelManagerContour::getMaxMinZ(double *minZ,double *maxZ)
{
if (_contourPropagation!=NULL)
}
}
-
void KernelManagerContour::CalculeSplinePropagation()
{
_contourPropagation->setInterpolationNumber(100);
{
bool addedModel = false;
manualBaseModel* manModelContour=NULL;
-
- if (_contourPropagation->ifSliceKeyContourExist(z)==false){
-
+ if (_contourPropagation->ifSliceKeyContourExist(z)==false)
+ {
manModelContour = factoryManualContourModel( typeofcontour );
-
int idTmp = _contourPropagation->FindIdWithZ(z);
-
if (type==0) // Initial Points
{
_contourPropagation->GetInitialControlPoints( idTmp , vecCtrlPointX,vecCtrlPointY,vecCtrlPointZ);
for (int j=0 ; j<sizeCtrPt ; j++)
{
//JSTG_16-07-08_----------------------------------------------------------------
- manModelContour->AddPoint( (*vecCtrlPointX)[j] , (*vecCtrlPointY)[j] , 900 );
+ manModelContour->AddPoint( (*vecCtrlPointX)[j] , (*vecCtrlPointY)[j] , -900 );
//--------------------------------------------------------------------
} // for j
-
tempVector[1]=z;
theName = modelManager->createOutline( manModelContour, tempVector );
addedModel = theName.compare("") != 0;
- if(!addedModel){
+ if(!addedModel)
+ {
manModelContour = NULL;
}
-
}// ifSliceKeyContourExist
return manModelContour;
}
-manualBaseModel * KernelManagerContour::factoryManualContourModel(int typeContour)
+manualBaseModel *KernelManagerContour::factoryManualContourModel(int typeContour)
{
manualBaseModel *manModelContour=NULL;
-
// Creating the model
// NOTE: The view and the controler are created in the wxVtkBaseView_SceneManager class, configureViewControlTo method
-
// spline
if (typeContour==0)
{
manModelContour = new manualContourModel();
}
-
// spline
if (typeContour==1)
{
manModelContour = new manualContourModel();
}
-
// rectangle
if (typeContour==2)
{
manModelContour = new manualContourModelRoi();
}
-
// circle
if (typeContour==3)
{
manModelContour = new manualContourModelCircle();
}
-
// line
if (typeContour==6)
{
manModelContour = new manualContourModelLine();
}
-
// points
if (typeContour==7)
{
manModelContour = new manualBaseModel();
}
-
// polygon
if (typeContour==10)
{
manModelContour = new manualContourModelPolygon();
}
-
return manModelContour;
}
git://git.creatis.insa-lyon.fr / creaContours.git / blobdiff