+/*# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+# pour la Sant�)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+# This software is governed by the CeCILL-B license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL-B
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+# or in the file LICENSE.txt.
+#
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
#include "ContourExtractData.h"
//----------------------------------------------------------------------
ContourExtractData::ContourExtractData( bool okImagesResults)
- {
- this->imagedata = NULL;
+{
+ this->imagedata = NULL;
imagedataValueResult = NULL;
imagedataMaskResult = NULL;
this->okImagesResults = okImagesResults;
_typeOperation = 0;
- }
+}
- // ------------------------------------------------------------------------
+// ------------------------------------------------------------------------
- ContourExtractData::~ContourExtractData()
- {
- }
+ContourExtractData::~ContourExtractData()
+{
+}
//----------------------------------------------------------------------
void ContourExtractData::SetImage( vtkImageData* imagedata)
- {
- this->imagedata = imagedata;
- if (this->okImagesResults==true){
- InitVtkImagesResult();
- }
- }
+{
+ this->imagedata = imagedata;
+ this->imagedata->GetScalarRange(scalarRange);
+
+ // RaC 20-11-09 Changes in InitLstContoursLinesYPoints
+ int ext[6];
+ this->imagedata->GetWholeExtent(ext);
+ _sizeImageY = ext[3]-ext[2]+1;
+
+ // init vtk image result : valuesImage maskImage
+ if (this->okImagesResults==true){ InitVtkImagesResult(); }
+}
//----------------------------------------------------------------------
void ContourExtractData::SetZtoBeAnalys( int z )
- {
+{
this->zImage = z;
- }
+}
//------------------------------------------------------------------------
- void ContourExtractData::SetLstManualContourModel( std::vector<manualContourModel*> lstManConMod)
- {
- this->lstManConMod = lstManConMod;
- }
+void ContourExtractData::SetLstManualContourModel( std::vector<manualBaseModel*> lstManConMod)
+{
+ this->lstManConMod = lstManConMod;
+}
//------------------------------------------------------------------------
void ContourExtractData::GetMinMaxPoint(int *minPoint,
- int *maxPoint,
- manualContourModel *manualcontourmodel
- )
+ int *maxPoint,
+ manualBaseModel *manualcontourmodel
+ )
{
int i;
//int np = manualcontourmodel->GetSizeLstPoints( ); // number of control points // JPRx
-// JSTG 26-02-08 ---------------------------------------------------------------------------------------
+ // JSTG 26-02-08 ---------------------------------------------------------------------------------------
//int nps = manualviewbaseecontour->GetNumberOfPointsSpline(); // number of points in the spline
int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
-//------------------------------------------------------------------------------------------------------
-
-// JSTG 26-02-08 ---------------------------------------------------------------------------------------
+ //------------------------------------------------------------------------------------------------------
+
+ // JSTG 26-02-08 ---------------------------------------------------------------------------------------
//double x,y,z,t;
double x,y,z;
//double delta=( double ) ( np ) / ( double ) ( nps );
if (x>maxPoint[0]){ maxPoint[0]=(int)x; }
if (y>maxPoint[1]){ maxPoint[1]=(int)y; }
}
-//------------------------------------------------------------------------------------------------------
+ minPoint[0]--;
+ minPoint[1]--;
+ maxPoint[0]++;
+ maxPoint[1]++;
+ //------------------------------------------------------------------------------------------------------
}
//------------------------------------------------------------------------
void ContourExtractData::GetMinMaxPoint_Of_LstManConMod( int *minPoint,
- int *maxPoint
- )
+ int *maxPoint
+ )
{
int i,size = lstManConMod.size();
+
for(i=0 ; i<size ; i++)
{
GetMinMaxPoint(minPoint,maxPoint,lstManConMod[i]);
}
}
-//------------------------------------------------------------------------
-int ContourExtractData::AnalisisContourInside(int x,
- int y,
- manualContourModel *manualcontourmodel
- )
+
+//------------------------------------------------------------------------
+int ContourExtractData::AnalisisContourInsideV2(int x, int y, int iContour )
{
+ bool inBorder=false;
int result = 0;
int i;
- //int np = manualcontourmodel->GetSizeLstPoints( ); // number of control points // JPRx
-// JSTG 26-02-08 ---------------------------------------------------------------------------------------
- //int nps = manualviewbaseecontour->GetNumberOfPointsSpline(); // number of points in the spline
- int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
- //double x1,y1,z1,x2,y2,z2,t;
- double x1,y1,z1,x2,y2,z2;
+ int nps=_lstlstlstVecX1[iContour][y].size();
+
+ double x1,y1,x2,y2;
+ double borderX, borderY;
double xx1, yy1,xx2, yy2;
- //double delta=( double ) ( np ) / ( double ) ( nps );
- manualcontourmodel->UpdateSpline();
-//------------------------------------------------------------------------------------------------------
+ double xx=x, yy=y;
double d;
- bool ok;
-// if (np>=2)
-// {
-// JSTG 26-02-08 ---------------------------------------------------------------------------------------
- nps--;
- //manualcontourmodel->GetSplinePoint(0,x1,y1,z1);
- manualcontourmodel->GetSpline_i_Point(0,&x1,&y1,&z1);
- for (i=1; i<=nps; i++)
+
+ for (i=0; i<nps; i++)
+ {
+ x1=_lstlstlstVecX1[iContour][y][i];
+ y1=_lstlstlstVecY1[iContour][y][i];
+ x2=_lstlstlstVecX2[iContour][y][i];
+ y2=_lstlstlstVecY2[iContour][y][i];
+
+ borderX=x1;
+ borderY=y1;
+
+ if (y1<y2)
+ {
+ xx1=x1; yy1=y1; xx2=x2; yy2=y2;
+ } else {
+ xx1=x2; yy1=y2; xx2=x1; yy2=y1;
+ }
+
+ double difxx2xx1=fabs(xx2-xx1);
+ if (difxx2xx1==0) difxx2xx1=0.0000000001;
+
+ // Finding border looking in vertical direction AND verifing if pixel is at right of the line
+ if ( (yy>=yy1)&&(yy<=yy2) )
{
- ok=false;
- //t= delta * (double)(i%nps);
- //manualcontourmodel->GetSplinePoint(t,x2,y2,z2);
- manualcontourmodel->GetSpline_i_Point(i,&x2,&y2,&z2);
-//------------------------------------------------------------------------------------------------------
//by triangle similarity
- if ( ((y1<y2)&&(y>=y1)&&(y<y2)) || ((y1>y2)&&(y<=y1)&&(y>y2)) )
+ d = ( fabs(xx2-xx1)*(yy-yy1) ) / (yy2-yy1) ;
+ if ( (xx1<=xx2)&&(x<(xx1+d)) ) { result++; }
+ if ( (xx1>xx2)&&(x<(xx1-d)) ) { result++; }
+
+ if ( (yy2-yy1)/difxx2xx1 >= 1.0)
{
- if (y1<y2) { xx1=x1; yy1=y1; xx2=x2; yy2=y2;} else { xx1=x2; yy1=y2; xx2=x1; yy2=y1; }
- d = ( fabs(xx2-xx1)*(y-yy1) ) / (yy2-yy1) ;
- if ( ((xx1<xx2)&&(x<(xx1+d))) || ((xx1>xx2)&&(x<(xx1-d))) ) { result++; }
- } // if
- x1=x2; y1=y2; z1=z2;
- } // for i
-// } //if
+ if (xx1<=xx2)
+ {
+ borderX = xx1+d;
+ borderY = y;
+ } else {
+ borderX = xx1-d;
+ borderY = y;
+ }
+ }
+ } // if point inside y
+
+
+ // Finding border looking in vertical direction
+ if ( ((xx1<=xx2)&&(xx>=xx1)&&(xx<xx2)) || ((xx1>xx2)&&(xx>=xx2)&&(xx<xx1)) )
+ {
+ if ( (yy2-yy1)/difxx2xx1 <= 1.0)
+ {
+ //by triangle similarity
+ d = ( fabs(xx1-xx)*(yy2-yy1) ) / difxx2xx1;
+ if (yy1+d<=yy2) {
+ borderX=x;
+ borderY=yy1+d;
+ }
+ }
+ } // if point inside x
+
+
+ //Border verification
+ if ( (x==(int)borderX) && (y==(int)borderY) ) { inBorder=true; }// if point in border
+
+ // Verification : border in horizontal line
+ if ( ((int)y1==(int)y2) && ((int)y1==y) && (x1<x2) && (x>=x1) && (x<=x2)) { inBorder=true; }
+ if ( ((int)y1==(int)y2) && ((int)y1==y) && (x2<x1) && (x>=x2) && (x<=x1)) { inBorder=true; }
+
+ if (inBorder==true){ i=nps; }
+ } // for i
+
+ if (inBorder==true) { result=1; }
+
return result;
}
-//------------------------------------------------------------------------
+//------------------------------------------------------------------------
+// typeOperation=0 AND
+// typeOperation=1 OR
+// typeOperation=2 XOR
bool ContourExtractData::isInside(int x, int y, int typeOperation)
{
bool result = false;
int i,size = this->lstManConMod.size();
int numberInside = 0;
+ /* RaC 20-11-09 (C1) Changes to use the method without the image.
int ext[6];
imagedata->GetExtent(ext);
if ((x>=0) && (x<=ext[1]) && (y>=0) && (y<=ext[3]))
{
+ */
- if (typeOperation==0) // AND Intersection
+ if (typeOperation==0) // AND Intersection
+ {
+ for (i=0;i<size;i++)
{
- for (i=0;i<size;i++)
+ // To process the statistics of the Points contour the procedure is different
+ // RaC 19-09-09
+ manualBaseModel *mbm = lstManConMod[i];
+ if(mbm->GetTypeModel()==7)
{
- numberLeft = AnalisisContourInside(x,y, lstManConMod[i] );
- if ( (numberLeft % 2) ==1){ numberInside++; }
- }
- if ( numberInside == (size) ){ result=true; }
- } // AND Intersection
+ if(mbm->IsPoint(x,y)==true)
+ {
+ numberLeft=1;
+ }
+ }//if
+ else
+ {
+ numberLeft = AnalisisContourInsideV2(x,y, i );
+ }//else
+
+ if ( (numberLeft % 2) ==1){ numberInside++; }
+ }
+ if ( numberInside == (size) ){ result=true; }
+ } // AND Intersection
+ numberLeft=0;
- if (typeOperation==1) // OR All
+ if (typeOperation==1) // OR All
+ {
+ for (i=0;i<size;i++)
{
- for (i=0;i<size;i++)
+ // To process the statistics of the Points contour the procedure is different
+ // RaC 19-09-09
+ manualBaseModel *mbm = lstManConMod[i];
+ if(mbm->GetTypeModel()==7)
{
- numberLeft = AnalisisContourInside(x,y, lstManConMod[i] );
- if ( (numberLeft % 2) ==1){ result=true; }
- }
- } // OR All
+ if(mbm->IsPoint(x,y)==true)
+ {
+ numberLeft=1;
+ }
+ }//if
+ else
+ {
+ numberLeft = AnalisisContourInsideV2(x,y, i );
+ }//else
+ if ( (numberLeft % 2) ==1){ result=true; }
+ }
+ } // OR All
+
+ numberLeft=0;
- if (typeOperation==2) // XOR crown
+ if (typeOperation==2) // XOR crown
+ {
+ for (i=0;i<size;i++)
{
- for (i=0;i<size;i++)
+ // To process the statistics of the Points contour the procedure is different
+ // RaC 19-09-09
+ manualBaseModel *mbm = lstManConMod[i];
+ if(mbm->GetTypeModel()==7)
+ {
+ if(mbm->IsPoint(x,y)==true)
+ {
+ numberLeft=1;
+ }
+ }//if
+ else
{
- numberLeft = numberLeft + AnalisisContourInside(x,y, lstManConMod[i] );
- }
- if ( numberLeft % 2 ==1){ result = true; }
- }// XOR crown
+ numberLeft = numberLeft + AnalisisContourInsideV2(x,y, i );
+ }//else
+ }
+ if ( numberLeft % 2 ==1){ result = true; }
+ }// XOR crown
- }
+
+ //RaC }
return result;
}
double ContourExtractData::GetDataValue(int x, int y, int z)
{
-// wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)wxvtkbaseview;
-// int z = (int)wxvtk2dbaseview->GetVtkBaseData()->GetZ();
+ // wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)wxvtkbaseview;
+ // int z = (int)wxvtk2dbaseview->GetVtkBaseData()->GetZ();
//JSTG 13-03-08-----
-//EED OJO avec JS _zz = z;
+ //EED OJO avec JS _zz = z;
//------------------
double result;
void *p;
p = imagedata->GetScalarPointer(x,y,z);
- if (imagedata->GetScalarType()==VTK_UNSIGNED_CHAR)
- { unsigned char *pp = (unsigned char*)p;
+ if (imagedata->GetScalarType()==VTK_CHAR)
+ {
+ char *pp = (char*)p;
result = (double)(*pp);
}
- if (imagedata->GetScalarType()==VTK_FLOAT)
- { float *pp = (float*)p;
+ else if (imagedata->GetScalarType()==VTK_SIGNED_CHAR)
+ {
+ signed char *pp = (signed char*)p;
+ result = (double)(*pp);
+ }
+ else if (imagedata->GetScalarType()==VTK_UNSIGNED_CHAR)
+ {
+ unsigned char *pp = (unsigned char*)p;
result = (double)(*pp);
}
- if (imagedata->GetScalarType()==VTK_SHORT)
- { short *pp = (short*)p;
+ else if (imagedata->GetScalarType()==VTK_SHORT)
+ {
+ short *pp = (short*)p;
result = (double)(*pp);
}
- if (imagedata->GetScalarType()==VTK_UNSIGNED_SHORT)
- { unsigned short *pp = (unsigned short*)p;
+ else if (imagedata->GetScalarType()==VTK_UNSIGNED_SHORT)
+ {
+ unsigned short *pp = (unsigned short*)p;
result = (double)(*pp);
}
+ else if (imagedata->GetScalarType()==VTK_INT)
+ {
+ int *pp = (int*)p;
+ result = (double)(*pp);
+ }
+ else if (imagedata->GetScalarType()==VTK_UNSIGNED_INT)
+ {
+ unsigned int *pp = (unsigned int*)p;
+ result = (double)(*pp);
+ }
+ else if (imagedata->GetScalarType()==VTK_LONG)
+ {
+ long *pp = (long*)p;
+ result = (double)(*pp);
+ }
+ else if (imagedata->GetScalarType()==VTK_UNSIGNED_LONG)
+ {
+ unsigned long *pp = (unsigned long*)p;
+ result = (double)(*pp);
+ }
+ else if (imagedata->GetScalarType()==VTK_FLOAT)
+ {
+ float *pp = (float*)p;
+ result = (double)(*pp);
+ }
+ else if (imagedata->GetScalarType()==VTK_DOUBLE)
+ {
+ double *pp = (double*)p;
+ result = (double)(*pp);
+ }
+
return result;
}
{
unsigned short *pValue;
unsigned short *pMask;
- pValue = (unsigned short *)imagedataValueResult->GetScalarPointer(x,y,z);
- pMask = (unsigned short *)imagedataMaskResult->GetScalarPointer(x,y,z);
- *pMask = 255;
- *pValue = (unsigned short)value;
+//EED 2017-12-18
+ imagedataValueResult->SetScalarComponentFromDouble(x,y,z,0,value);
+ imagedataMaskResult->SetScalarComponentFromDouble(x,y,z,0,255);
+// pValue = (unsigned short *)imagedataValueResult->GetScalarPointer(x,y,z);
+// *pValue = (unsigned short)value;
+// pMask = (unsigned char *)imagedataMaskResult->GetScalarPointer(x,y,z);
+// *pMask = 255;
}
//------------------------------------------------------------------------
unsigned short *pMask;
pValue = (unsigned short *)imagedataValueResult->GetScalarPointer(0,0,z);
pMask = (unsigned short *)imagedataMaskResult->GetScalarPointer(0,0,z);
-
+
int ext[6];
imagedataValueResult->GetExtent(ext);
- int i,size = (ext[1]-ext[0]+1) * (ext[3]-ext[2]+1);
- for(i=0; i<size; i++)
- {
- *pMask = 0;
- *pValue = 0;
- pMask++;
- pValue++;
- }// for
+ int size = (ext[1]-ext[0]+1) * (ext[3]-ext[2]+1);
+ memset(pValue,0, size*imagedataValueResult->GetScalarSize() );
+ memset(pMask,0, size*imagedataMaskResult->GetScalarSize() );
} // if
}
maxPoint[1] = -999999;
GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
- for (j=minPoint[1]; j<maxPoint[1]; j++)
+ InitLstContoursLinesYPoints();
+
+ for (j=minPoint[1]; j<=maxPoint[1]; j++)
{
- for (i=minPoint[0]; i<maxPoint[0]; i++)
+ for (i=minPoint[0]; i<=maxPoint[0]; i++)
{
- if (isInside(i,j,_typeOperation)==true)
+
+ //RaC 20-11-09 Changes specified in isInside (C1)
+ int ext[6];
+ imagedata->GetExtent(ext);
+
+ if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
{
- value = GetDataValue(i,j,zImage);
- PutVtkImageDataResultValue(i,j,zImage, value );
- } // if
+ if (isInside(i,j,_typeOperation)==true)
+ {
+ value = GetDataValue(i,j,zImage);
+ if ( (value>=scalarRange[0]) && (value<=scalarRange[1]) )
+ {
+ PutVtkImageDataResultValue(i,j,zImage, value );
+ } // scalarRange
+ } // if isInside
+
+ } // if ext
} // for i
} // for j
imagedataValueResult->Modified();
imagedataMaskResult->Modified();
- }
+ imagedataValueResult->Update();
+ imagedataMaskResult->Update();
+ } // if
}
//------------------------------------------------------------------------
-void ContourExtractData::GetValuesInsideCrown(std::vector<double> *pLstValue,
+void ContourExtractData::GetValuesInsideCrown( int *numberOfPixels,
+ std::vector<double> *pLstValue,
std::vector<double> *pLstValuePosX,
std::vector<double> *pLstValuePosY,
std::vector<double> *pLstValuePosZ)
pLstValuePosY->clear();
pLstValuePosZ->clear();
-// if (okImagesResults==true)
-// {
-// ResetImageResult(zImage);
-// }
+ // if (okImagesResults==true)
+ // {
+ // ResetImageResult(zImage);
+ // }
int minPoint[2];
int maxPoint[2];
int i,j;
double value;
-
+ int acum=0;
minPoint[0] = 999999;
minPoint[1] = 999999;
maxPoint[1] = -999999;
GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
+ InitLstContoursLinesYPoints();
-
- for (j=minPoint[1]; j<maxPoint[1]; j++)
+ for (j=minPoint[1]; j<=maxPoint[1]; j++)
{
- for (i=minPoint[0]; i<maxPoint[0]; i++)
+ for (i=minPoint[0]; i<=maxPoint[0]; i++)
{
- if (isInside(i,j,_typeOperation)==true)
+ //RaC 20-11-09 Changes specified in isInside (C1)
+ int ext[6];
+ imagedata->GetExtent(ext);
+
+ if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
{
- value = GetDataValue(i,j,zImage);
-
-// Borrame
-// if (okImagesResults==true){
-// PutVtkImageDataResultValue(i,j,zImage, value );
-// }
-
- pLstValue -> push_back( value );
- pLstValuePosX -> push_back( i );
- pLstValuePosY -> push_back( j );
- pLstValuePosZ -> push_back( -1 );
- } // if
+ if (isInside(i,j,_typeOperation)==true)
+ {
+
+ acum++;
+ value = GetDataValue(i,j,zImage);
+ if ( (value>=scalarRange[0]) && (value<=scalarRange[1]) )
+ {
+ pLstValue -> push_back( value );
+ pLstValuePosX -> push_back( i );
+ pLstValuePosY -> push_back( j );
+ pLstValuePosZ -> push_back( -1 );
+ } // scalarRange
+ } // if isInside
+ } // if ext
} // for
} // for
-
-// Borrame
-// if (this->okImagesResults==true){
-// imagedataValueResult->Modified();
-// imagedataMaskResult->Modified();
-// }
-
-
+ *numberOfPixels = acum;
}
//------------------------------------------------------------------------
// ------------------------------------------------------------------------
void ContourExtractData::InitVtkImagesResult()
{
- int ext[6];
- int newDim[3];
- double spc[3];
- int scalartype;
-
- imagedata->GetSpacing(spc);
- imagedata->GetExtent(ext);
- newDim[0]=ext[1]-ext[0]+1;
- newDim[1]=ext[3]-ext[2]+1;
- newDim[2]=ext[5]-ext[4]+1;
- scalartype = imagedata->GetScalarType();
-
- if (imagedataValueResult!=NULL)
- {
- imagedataValueResult->Delete();
- }
- imagedataValueResult = vtkImageData::New();
-// imagedataValueResult->SetScalarType(scalartype);
- imagedataValueResult->SetScalarTypeToUnsignedShort();
- imagedataValueResult->SetSpacing(spc);
- imagedataValueResult->SetDimensions( newDim );
- imagedataValueResult->AllocateScalars();
-
- if (imagedataMaskResult!=NULL)
- {
- imagedataMaskResult->Delete();
- }
- imagedataMaskResult = vtkImageData::New();
-// imagedataMaskResult->SetScalarType(scalartype);
- imagedataMaskResult->SetScalarTypeToUnsignedShort();
- imagedataMaskResult->SetSpacing(spc);
- imagedataMaskResult->SetDimensions( newDim );
- imagedataMaskResult->AllocateScalars();
+ int ext[6];
+ int newDim[3];
+ double spc[3];
+ int scalartype;
+
+ imagedata->GetSpacing(spc);
+ imagedata->GetExtent(ext);
+ newDim[0]=ext[1]-ext[0]+1;
+ newDim[1]=ext[3]-ext[2]+1;
+ newDim[2]=ext[5]-ext[4]+1;
+ scalartype = imagedata->GetScalarType();
+
+ if (imagedataValueResult!=NULL)
+ {
+ imagedataValueResult->Delete();
+ }
+ imagedataValueResult = vtkImageData::New();
+
+//EED 2017-12-18
+ imagedataValueResult->SetScalarType(scalartype);
+ //imagedataValueResult->SetScalarTypeToUnsignedShort();
+
+ imagedataValueResult->SetSpacing(spc);
+ imagedataValueResult->SetDimensions( newDim );
+ imagedataValueResult->AllocateScalars();
+
+ if (imagedataMaskResult!=NULL)
+ {
+ imagedataMaskResult->Delete();
+ }
+ imagedataMaskResult = vtkImageData::New();
+
+//EED 2017-12-18
+// imagedataMaskResult->SetScalarType(scalartype);
+// imagedataMaskResult->SetScalarTypeToUnsignedShort();
+ imagedataMaskResult->SetScalarTypeToUnsignedChar();
+
+ imagedataMaskResult->SetSpacing(spc);
+ imagedataMaskResult->SetDimensions( newDim );
+ imagedataMaskResult->AllocateScalars();
+}
+
+
+//------------------------------------------------------------------------
+void ContourExtractData::InitVolumeStatistics()
+{
+ vol_rCountRange = 0;
+ vol_rsize = 0;
+ vol_minValue = 9999999;
+ vol_maxValue =-9999999;
+ vol_acum_average = 0;
+ vol_acum_standardeviation = 0;
}
+//------------------------------------------------------------------------
+void ContourExtractData::SetVolumeStatistics(int rCountRange,
+ int rsize,
+ double minValue,
+ double maxValue,
+ double acum_average,
+ double acum_standardeviation)
+{
+ vol_rCountRange = vol_rCountRange + rCountRange;
+ vol_rsize = vol_rsize + rsize;
+
+ if (minValue<vol_minValue){ vol_minValue = minValue; }
+ if (maxValue>vol_maxValue){ vol_maxValue = maxValue; }
+
+ vol_acum_average = vol_acum_average + acum_average;
+ vol_acum_standardeviation = vol_acum_standardeviation + acum_standardeviation;
+}
+
+//------------------------------------------------------------------------
+void ContourExtractData::GetVolumeStatistics(int *vol_rCountRange,
+ int *vol_rsize,
+ double *vol_minValue,
+ double *vol_maxValue,
+ double *vol_average,
+ double *vol_standardeviation)
+{
+ *vol_rCountRange = this->vol_rCountRange;
+ *vol_rsize = this->vol_rsize;
+ *vol_minValue = this->vol_minValue;
+ *vol_maxValue = this->vol_maxValue;
+ *vol_average = this->vol_acum_average / this->vol_rsize;
+ *vol_standardeviation = sqrt(this->vol_acum_standardeviation / this->vol_rsize);
+}
//------------------------------------------------------------------------
double *rmin,
double *rmax,
double *raverage,
- double *rstandardeviation)
+ double *rstandardeviation
+ )
{
- double min = 0;
- double max = 0;
- double average = 0;
- double standardeviation = 0;
- double acum = 0;
- int size = 0;
- int countRange = 0;
- double ng;
-
- if (inputLstValue!=NULL)
- {
+ double min = 0;
+ double max = 0;
+ double average = 0;
+ double standardeviation = 0;
+ double acum_average = 0;
+ double acum_standardeviation = 0;
+ int size = 0;
+ int countRange = 0;
+ double ng;
+
+ if (inputLstValue!=NULL)
+ {
size=inputLstValue->size();
if (size>0){
- max=(*inputLstValue)[0];
- min=(*inputLstValue)[0];
- // Average , countRange
+ max=(*inputLstValue)[0];
+ min=(*inputLstValue)[0];
+ // Average , countRange
int i;
for ( i=0; i<size; i++ )
{
ng=(*inputLstValue)[i];
- acum = acum + ng;
+ acum_average = acum_average + ng;
if (max<ng) max=ng; // Max
if (min>ng) min=ng; // Min
if ((ng>=grayRangeMin) && (ng<=grayRangeMax)) countRange++; // countRange
- }
- average = acum / size;
+ } // for average
+ average = acum_average / size;
- // Standar Deviation
- acum=0;
+ // Standar Deviation
+ acum_standardeviation=0;
double tmp;
- for ( i=0; i<size; i++ )
+ for ( i=0; i<size; i++ )
{
- tmp = (*inputLstValue)[i] - average;
- acum = acum + tmp*tmp;
- }
- standardeviation = sqrt(acum/size);
-
- }
- }
-
- // OUTPUT
- *rsize = size;
- *rCountRange = countRange;
- *rmin = min;
- *rmax = max;
- *raverage = average;
- *rstandardeviation = standardeviation;
+ tmp = (*inputLstValue)[i] - average;
+ acum_standardeviation = acum_standardeviation + tmp*tmp;
+ } // for standar deviation
+ standardeviation = sqrt(acum_standardeviation/size);
+ SetVolumeStatistics(countRange, (*rsize),
+ min,max,
+ acum_average,acum_standardeviation);
+ } // if size
+ } // if NULL
+
+ // OUTPUT
+ *rsize = size;
+ *rCountRange = countRange;
+ *rmin = min;
+ *rmax = max;
+ *raverage = average;
+ *rstandardeviation = standardeviation;
}
//------------------------------------------------------------------------
{
_typeOperation=type;
}
+
+//------------------------------------------------------------------------
+void ContourExtractData::Fill_lstlstlstVecXY(int iContour, int sizeY)
+{
+ int i,y;
+ double x1,y1,z1,x2,y2,z2;
+ manualBaseModel *manualcontourmodel= lstManConMod[iContour];
+ int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
+ manualcontourmodel->UpdateSpline();
+ //------------------------------------------------------------------------------------------------------
+
+ for (y=0;y<sizeY;y++)
+ {
+ manualcontourmodel->GetSpline_i_Point(0,&x1,&y1,&z1);
+ x1=x1+0.5; y1=y1+0.5;
+ for (i=1; i<nps; i++)
+ {
+ manualcontourmodel->GetSpline_i_Point(i,&x2,&y2,&z2);
+ x2=x2+0.5; y2=y2+0.5;
+ if ( ((y1<y2)&&(y>=y1)&&(y<=y2)) || ((y1>y2)&&(y>=y2)&&(y<=y1)) || ((int)y1==y) || ((int)y2==y) )
+ {
+ _lstlstlstVecX1[iContour][y].push_back(x1);
+ _lstlstlstVecY1[iContour][y].push_back(y1);
+ _lstlstlstVecX2[iContour][y].push_back(x2);
+ _lstlstlstVecY2[iContour][y].push_back(y2);
+ }
+ x1=x2; y1=y2; z1=z2;
+ } // for i Points in spline
+ } // y
+
+}
+
+void ContourExtractData::InitLstContoursLinesYPoints()
+{
+ // init InInside Optimisation
+ int i;
+
+ _lstlstlstVecX1.clear();
+ _lstlstlstVecY1.clear();
+ _lstlstlstVecX2.clear();
+ _lstlstlstVecY2.clear();
+
+ /* RaC 20-11-09
+ int ext[6];
+ this->imagedata->GetWholeExtent(ext);
+ int sizeY = ext[3]-ext[2]+1;
+ */
+ std::vector<double> vecDouble;
+ std::vector< std::vector<double> > vecVecDouble;
+ for ( i=0 ; i<_sizeImageY ; i++ )
+ {
+ vecVecDouble.push_back( vecDouble );
+ }
+
+ //Fill structure with points
+ int sizeContours = lstManConMod.size();
+ for( i=0 ; i<sizeContours ; i++ )
+ {
+ _lstlstlstVecX1.push_back( vecVecDouble );
+ _lstlstlstVecY1.push_back( vecVecDouble );
+ _lstlstlstVecX2.push_back( vecVecDouble );
+ _lstlstlstVecY2.push_back( vecVecDouble );
+ Fill_lstlstlstVecXY(i,_sizeImageY);
+ }
+
+}
+
+void ContourExtractData::SetScalarRange(double min, double max)
+{
+ scalarRange[0]=min;
+ scalarRange[1]=max;
+}
+
+void ContourExtractData::SetSizeImageY(int pSizeImageY)
+{
+ _sizeImageY=pSizeImageY;
+}
git://git.creatis.insa-lyon.fr / creaMaracasVisu.git / blobdiff