+/*# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+# pour la Sant�)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+# This software is governed by the CeCILL-B license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL-B
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+# or in the file LICENSE.txt.
+#
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
#ifndef __ContourExtractData_h_INCLUDED_H__
#define __ContourExtractData_h_INCLUDED_H__
void SetImage( vtkImageData* imagedata);
void SetZtoBeAnalys( int z );
- void SetLstManualContourModel( std::vector<manualContourModel*> lstManConMod);
- void GetValuesInsideCrown( std::vector<double> *pLstValue,
+ void SetLstManualContourModel( std::vector<manualBaseModel*> lstManConMod);
+ void GetValuesInsideCrown( int *numberOfPixels,
+ std::vector<double> *pLstValue,
std::vector<double> *pLstValuePosX,
std::vector<double> *pLstValuePosY,
std::vector<double> *pLstValuePosZ);
double *rstandardeviation);
void SetTypeOperation(int type);
+ //--Volume Statistics--
+ void InitVolumeStatistics();
+ void GetVolumeStatistics(int *vol_rCountRange, int *vol_rsize,
+ double *vol_minValue, double *vol_maxValue,
+ double *vol_average, double *vol_standardeviation);
+
+ void ResetImageResult(int z);
+ void SetScalarRange(double min, double max);
+ void InitLstContoursLinesYPoints();
+ bool isInside(int x, int y, int typeOperation );
+
+ //
+ // Asigns the sizeImageY.
+ // @param pSizeImageY - int
+ void SetSizeImageY(int pSizeImageY);
+
private:
+ double scalarRange[2];
bool okImagesResults;
- std::vector<manualContourModel*> lstManConMod;
+
+ //
+ // List of contours to obtain the respective statistics.
+ //
+ std::vector<manualBaseModel*> lstManConMod;
+
+ //
+ // Operation Type (AND,OR,XOR...)
+ //
int _typeOperation;
int zImage;
vtkImageData *imagedataValueResult;
vtkImageData *imagedataMaskResult;
- bool isInside(int x, int y, int typeOperation );
+ //Size Y
+ int _sizeImageY;
+
+ //
+ // Asigns the minimum and maximum points of the contour model in parameter.
+ // @param *minPoint - int
+ // @param *maxPoint - int
+ // @param *manualcontourmodel - manualBaseModel
+ //
void GetMinMaxPoint(int *minPoint,
int *maxPoint,
- manualContourModel *manualcontourmodel );
+ manualBaseModel *manualcontourmodel );
+ //
+ // Obtain the minimum and maximum point among the contours. The value is saved in the parameter
+ // pointers
+ // @param *minPoint - int pointer to the minPoint
+ // @param *maxPoint - int pointer to the maxPoint
+ //
void GetMinMaxPoint_Of_LstManConMod( int *minPoint,
int *maxPoint);
- int AnalisisContourInside( int x,
- int y,
- manualContourModel *manualcontourmodel );
+ int AnalisisContourInsideV2(int x, int y, int iContour );
+
double GetDataValue(int x, int y, int z);
- void ResetImageResult(int z);
void PutVtkImageDataResultValue( int x, int y,int z, double value );
void InitVtkImagesResult();
+ //--Volume Statistics--
+ int vol_rCountRange;
+ int vol_rsize;
+ double vol_minValue;
+ double vol_maxValue;
+ double vol_acum_average;
+ double vol_acum_standardeviation;
+ void SetVolumeStatistics(int rCountRange, int rsize,
+ double minValue,double maxValue,
+ double acum_average, double acum_standardeviation);
+
+ // Optimize IsInside
+ // List of contours , list of linesY, list of points over the line
+ std::vector< std::vector< std::vector<double> > > _lstlstlstVecX1;
+ std::vector< std::vector< std::vector<double> > > _lstlstlstVecY1;
+ std::vector< std::vector< std::vector<double> > > _lstlstlstVecX2;
+ std::vector< std::vector< std::vector<double> > > _lstlstlstVecY2;
+ void Fill_lstlstlstVecXY(int iContour, int sizeY);
+
+
};