+++ /dev/null
-/*=========================================================================
-
- Program: wxMaracas
- Module: $RCSfile: marSimpleDicom.h,v $
- Language: C++
- Date: $Date: 2008/10/31 16:32:56 $
- Version: $Revision: 1.1 $
-
- Copyright: (c) 2002, 2003
- License:
-
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the above copyright notice for more information.
-
-=========================================================================*/
-
-#ifndef __MAR__KERNEL__MARSIMPLEDICOM__HXX__
-#define __MAR__KERNEL__MARSIMPLEDICOM__HXX__
-
-#include "marDicomBase.h"
-
-#include "volume.hxx"
-#include <wx/string.h>
-#include <wx/gauge.h>
-// PS -> #include <gdcm.h>
-// PS -> #include <gdcmHeaderHelper.h>
-#include <vector>
-// PS -> #include <gdcmElValSet.h>
-
-typedef std::vector<wxArrayString> SerieInfo; //DICOM info for each serie
- /**
-* Shouldn't we break the dependencies to wx ???
-*
-* We use vector instead of list for efficiency: for access time
-* futhermore the number of patient is not changing a lot, so we
-* might add the number of patient to params.dat, to allocate the right
-* number of vector
-*
-*/
-
-// EED Borrame
-//class MAR_KERNEL_EXPORT marGdcmDicom : public marObject
-
-class marSimpleDicom : public marFilesBase
-{
-public:
-
- enum DicomTags
- {
- ID_File_Name = 0 ,
- ID_SOP_Class_UID ,//!0008 0016 UI ID SOP Class UID
- ID_SOP_Instance_UID ,//!0008 0018 UI ID SOP Instance UID
- ID_Study_Date ,//!0008 0020 DA ID Study Date
- ID_Series_Date ,//!0008 0021 DA ID Series Date
- ID_Acquisition_Date ,//!0008 0022 DA ID Acquisition Date
- ID_Image_Date ,//!0008 0023 DA ID Image Date
- ID_Study_Time ,//!0008 0030 TM ID Study Time
- ID_Series_Time ,//!0008 0031 TM ID Series Time
- ID_Acquisition_Time ,//!0008 0032 TM ID Acquisition Time
- ID_Image_Time ,//!0008 0033 TM ID Image Time
- ID_Modality ,//!0008 0060 CS ID Modality
- ID_Manufacturer ,//!0008 0070 LO ID Manufacturer
- ID_Institution_Name ,//!0008 0080 LO ID Institution Name
- ID_Study_Description ,//!0008 1030 LO ID Study Description
- ID_Series_Description ,//!0008 103e LO ID Series Description
- ID_Admitting_Diagnoses_Description ,//!0008 1080 LO ID Admitting Diagnoses Description
- ID_Patient_Name ,//!0010 0010 PN PAT Patient Name
- ID_Patient_ID ,//!0010 0020 LO PAT Patient ID
- ID_Body_Part_Examined ,//!0018 0015 CS ACQ Body Part Examined
- ID_Scanning_Sequence ,//!0018 0020 CS ACQ Scanning Sequence
- ID_Sequence_Variant ,//!0018 0021 CS ACQ Sequence Variant
- ID_Scan_Options ,//!0018 0022 CS ACQ Scan Options
- ID_MR_Acquisition_Type ,//!0018 0023 CS ACQ MR Acquisition Type
- ID_Sequence_Name ,//!0018 0024 SH ACQ Sequence Name
- ID_Slice_Thickness ,//!0018 0050 DS ACQ Slice Thickness
- ID_Repetition_Time ,//!0018 0080 DS ACQ Repetition Time
- ID_Echo_Time ,//!0018 0081 DS ACQ Echo Time
- ID_Inversion_Time ,//!0018 0082 DS ACQ Inversion Time
- ID_Number_of_Averages ,//!0018 0083 DS ACQ Number of Averages
- ID_Imaging_Frequency ,//!0018 0084 DS ACQ Imaging Frequency
- ID_Imaged_Nucleus ,//!0018 0085 SH ACQ Imaged Nucleus
- ID_Echo_Number ,//!0018 0086 IS ACQ Echo Number
- ID_Magnetic_Field_Strength ,//!0018 0087 DS ACQ Magnetic Field Strength
- ID_Spacing_Between_Slices ,//!0018 0088 DS ACQ Spacing Between Slices
- ID_Echo_Train_Length ,//!0018 0091 IS ACQ Echo Train Length
- ID_Percent_Sampling ,//!0018 0093 DS ACQ Percent Sampling
- ID_Percent_Phase_Field_of_View ,//!0018 0094 DS ACQ Percent Phase Field of View
- ID_Receiving_Coil ,//!0018 1250 SH ACQ Receiving Coil
- ID_Patient_Position ,//!0018 5100 CS ACQ Patient Position
- ID_Study_Instance_UID ,//!0020 000d UI REL Study Instance UID
- ID_Series_Instance_UID ,//!0020 000e UI REL Series Instance UID
- ID_Study_ID ,//!0020 0010 SH REL Study ID
- ID_Series_Number ,//!0020 0011 IS REL Series Number
- ID_Acquisition_Number ,//!0020 0012 IS REL Acquisition Number
- ID_Image_Number ,//!0020 0013 IS REL Image Number
- ID_Patient_Orientation ,//!0020 0020 CS REL Patient Orientation
- ID_Image_Position ,//!0020 0030 RET REL Image Position
- ID_Image_Position_Patient ,//!0020 0032 DS REL Image Position Patient
- ID_Image_Orientation ,//!0020 0035 RET REL Image Orientation
- ID_Image_Orientation_Patient ,//!0020 0037 DS REL Image Orientation (Patient)
- ID_Location ,//!0020 0050 RET REL Location
- ID_Frame_of_Reference_UID ,//!0020 0052 UI REL Frame of Reference UID
- ID_Slice_Location ,//!0020 1041 DS REL Slice Location
- ID_Image_Comments ,//!0020 4000 LT REL Image Comments
- ID_Pixel_Spacing ,//!0028 0030 DS IMG Pixel Spacing
- ID_Window_Center ,//!0028 1050 DS IMG Window Center
- ID_Window_Width ,//!0028 1051 DS IMG Window Width
- ID_dicom_tags_count
- };
-
-public:
- void SetVolumeData( int dimX,
- int dimY,
- int dimZ,
- float spacingX,
- float spacingY,
- float spacingZ,
- float rescaleSlope,
- float rescaleIntercept,
- unsigned short * pixels);
-
- marSimpleDicom( marParameters* p = NULL );
-
- virtual ~marSimpleDicom( );
-
- /**
- Function which return an *ordered* array string
- The string is ordered so that filename are in the right order
- */
-// PS -> wxArrayString getStudyInfo( ) { return( m_DicomInfo[m_ActualStudy][0] ); }
-// PS -> int getNumberOfStudies( ) { return m_DicomInfo.size(); }
-// PS -> wxArrayString getSerieInfo( ) { return( m_DicomInfo[m_ActualStudy][m_ActualSerie] ); }
-// PS -> int getNumberOfSeries( ) { return m_DicomInfo[m_ActualStudy].size(); }
-
-
-// PS -> int getNumberOfFiles( )
-// PS -> {
-// PS -> return m_DicomInfo[m_ActualStudy][m_ActualSerie].GetCount();
-// PS -> }
-
- void SetInvestSliceOrder(bool investSliceOrder);
-
- void loadActualSerie(wxGauge* gauge );
-
-// PS -> wxArrayString getImageNumbers( )
-// PS -> {
-// PS -> wxArrayString imageNumbers;
-// PS -> std::list<gdcmHeaderHelper*> flist = helper->GetGdcmFileList();
-// PS -> for(std::list<gdcmHeaderHelper*>::iterator it = flist.begin();
-// PS -> it != flist.end(); it++ )
-// PS -> {
-// PS -> imageNumbers.Add( wxString::Format("%d", (*it)->GetImageNumber()) );
-// PS -> }
-// PS -> return( imageNumbers );
-// PS -> }
-
- // PS -> void loadVolume( bool force = false, wxGauge* gauge = NULL);
- void loadVolumeDXMM( bool force = false, wxGauge* gauge = NULL);
-
-// PS ->
-// PS -> bool setActualStudy( unsigned int studynumber )
-// PS -> {
-// PS -> m_ActualStudy = studynumber;
-// PS -> return true;
-// PS -> }
-// PS -> bool setActualSerie( unsigned int serienumber )
-// PS -> {
-// PS -> m_ActualSerie = serienumber;
-// PS -> return true;
-// PS -> }
-// PS ->
- /**
- * General methods
- */
- void reset( );
- void copyFrom( const marObject& from );
-
- /**
- * Persistence methods
- */
- bool save( std::ofstream& os );
- bool load( std::ifstream& is );
-
-// PS -> void FillDicomInfo();
-
-// PS -> wxString GetPatientName()
-// PS -> {
-// PS -> return wxString( helper->GetGdcmHeader()->GetPubElValByNumber(0x0010,0x0010).c_str()).Trim();//0010 0010 PN PAT Patient Name
-// PS -> }
-
- private:
-
-// PS -> wxArrayString gdcmGetExamInfo( wxString directoryname );
-
- std::vector< SerieInfo > m_DicomInfo;
- unsigned int m_ActualStudy;
- unsigned int m_ActualSerie;
-
-// PS -> gdcmSerieHeaderHelper *helper;
- unsigned short * m_pSlicesPixels;
- int m_nX, m_nY, m_nSlices;
- float m_PixelSpacingColumn,m_PixelSpacingRow,m_PixelSpacingSlice;
- float m_RescaleSlope, m_RescaleIntercept;
- bool _investSliceOrder;
-};
-
-#endif // __MAR__KERNEL__MARSIMPLEDICOM__HXX__
git://git.creatis.insa-lyon.fr / creaMaracasVisu.git / blobdiff