+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ # pour la Santé)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ # This software is governed by the CeCILL-B license under French law and
+ # abiding by the rules of distribution of free software. You can use,
+ # modify and/ or redistribute the software under the terms of the CeCILL-B
+ # license as circulated by CEA, CNRS and INRIA at the following URL
+ # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ # or in the file LICENSE.txt.
+ #
+ # As a counterpart to the access to the source code and rights to copy,
+ # modify and redistribute granted by the license, users are provided only
+ # with a limited warranty and the software's author, the holder of the
+ # economic rights, and the successive licensors have only limited
+ # liability.
+ #
+ # The fact that you are presently reading this means that you have had
+ # knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------
+*/
//
// C++ Implementation: brukerobjectvaryingproperties
//
//
//
#include "brukerobjectvaryingproperties.h"
-
+#include "brukerexception.h"
BrukerObjectVaryingProperties::BrukerObjectVaryingProperties()
-void BrukerObjectVaryingProperties::setPositionS(std::map<std::string, BrukerFieldData> & BrukerHM){
+void BrukerObjectVaryingProperties::computePositionS(std::map<std::string, BrukerFieldData> & BrukerHM){
std::vector<double> PosiS =BrukerHM[(std::string) "ACQ_slice_offset"].GetDoubleValue();
PositionS =PosiS;
};
-void BrukerObjectVaryingProperties::setPositionR(std::map<std::string, BrukerFieldData> & BrukerHM){
+void BrukerObjectVaryingProperties::computePositionR(std::map<std::string, BrukerFieldData> & BrukerHM){
PositionR =BrukerHM[(std::string) "ACQ_read_offset"].GetDoubleValue() ;
};
-void BrukerObjectVaryingProperties::setPositionP(std::map<std::string, BrukerFieldData> & BrukerHM){
+void BrukerObjectVaryingProperties::computePositionP(std::map<std::string, BrukerFieldData> & BrukerHM){
PositionP =BrukerHM[(std::string) "ACQ_phase1_offset"].GetDoubleValue();
};
-void BrukerObjectVaryingProperties::setTE(std::map<std::string, BrukerFieldData> & BrukerHM){
+void BrukerObjectVaryingProperties::computeTE(std::map<std::string, BrukerFieldData> & BrukerHM){
TE = BrukerHM[(std::string) "ACQ_echo_time"].GetDoubleValue();
};
-double BrukerObjectVaryingProperties::getTE(int theValue) const{
- if (theValue < TE.size() && theValue >=0) {return TE[theValue];}
- else throw 0;
+double BrukerObjectVaryingProperties::getTE(unsigned int theValue) const{
+ if (theValue < TE.size() ) {return TE[theValue];}
+ //else throw 0;
+ else throw BrukerSizeException("TE", theValue, TE.size() );
}
-/*void BrukerObjectVaryingProperties::setTE(const std::vector< double >& theValue)
+/*void BrukerObjectVaryingProperties::computeTE(const std::vector< double >& theValue)
{
TE = theValue;
}*/
-double BrukerObjectVaryingProperties::getPositionP(int theValue) const{
- if (theValue < PositionP.size() && theValue >=0) return PositionP[theValue];
- else throw 0;
+double BrukerObjectVaryingProperties::getPositionP(unsigned int theValue) const{
+ if (theValue < PositionP.size() ) return PositionP[theValue];
+// else throw 1;
+ else throw BrukerSizeException("PositionP", theValue, PositionP.size() );
}
-/*void BrukerObjectVaryingProperties::setPositionP(const std::vector< double >& theValue)
+/*void BrukerObjectVaryingProperties::computePositionP(const std::vector< double >& theValue)
{
PositionP = theValue;
}*/
-double BrukerObjectVaryingProperties::getPositionR(int theValue) const{
- if (theValue < PositionR.size() && theValue >=0) return PositionR[theValue];
- else throw 0;
+double BrukerObjectVaryingProperties::getPositionR(unsigned int theValue) const{
+ if (theValue < PositionR.size() ) return PositionR[theValue];
+// else throw 2;
+ else throw BrukerSizeException("PositionR", theValue, PositionR.size() );
}
-/*void BrukerObjectVaryingProperties::setPositionR(const std::vector< double >& theValue)
+/*void BrukerObjectVaryingProperties::computePositionR(const std::vector< double >& theValue)
{
PositionP = theValue;
}*/
-double BrukerObjectVaryingProperties::getPositionS(int theValue) const{
- if (theValue < PositionS.size() && theValue >=0) return PositionS[theValue];
- else throw 0;
+double BrukerObjectVaryingProperties::getPositionS(unsigned int theValue) const{
+ if (theValue < PositionS.size() ) return PositionS[theValue];
+// else throw 3;
+ else throw BrukerSizeException("PositionS", theValue, PositionS.size() );
}
-/*void BrukerObjectVaryingProperties::setPositionS(const std::vector< double >& theValue)
+/*void BrukerObjectVaryingProperties::computePositionS(const std::vector< double >& theValue)
{
PositionP = theValue;
}*/
-int BrukerObjectVaryingProperties::getAcquisitionOrder(int theValue) const{
- if (theValue <AcquisitionOrder.size() && theValue >=0) return AcquisitionOrder[theValue];
- else throw 0;
+int BrukerObjectVaryingProperties::getAcquisitionOrder(unsigned int theValue) const{
+ if (theValue <AcquisitionOrder.size()) return AcquisitionOrder[theValue];
+ //else throw 4;
+ else throw BrukerSizeException("AcquisitionOrder", theValue, AcquisitionOrder.size() );
}
-/*void BrukerObjectVaryingProperties::setAcquisitionOrder(const std::vector< int >& theValue1, const std::vector< int >& theValue2)
+/*void BrukerObjectVaryingProperties::computeAcquisitionOrder(const std::vector< int >& theValue1, const std::vector< int >& theValue2)
{
AcquisitionOrder.clear();
- if (theValue1.size() != theValue2[3]*theValue2[1]) throw 0;
- if (theValue2.size() < 4 ) throw 0;
+ if (theValue1.size() != theValue2[3]*theValue2[1]) throw 5;
+ if (theValue2.size() < 4 ) throw 6;
for (int i =0 ;i<theValue2[3];i++)AcquisitionOrder.push_back()=(int) theValue1[i*theValue2[1]]/theValue2[1];
}*/
-void BrukerObjectVaryingProperties::setAcquisitionOrder(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct){
- std::vector<int> AcqOrder;
- if (BrukerHM[(std::string) "ACQ_obj_order"].GetIntValue().size() != LoopStruct[3]*LoopStruct[1]) throw 0;
- if (LoopStruct.size() < 4 ) throw 0;
+void BrukerObjectVaryingProperties::computeAcquisitionOrder(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct){
+ std::vector<int> AcqOrder;
+
+ if (BrukerHM[(std::string) "ACQ_obj_order"].GetIntValue().size() != LoopStruct[3]*LoopStruct[1]) {
+ std::cout << "BrukerHM[(std::string) 'ACQ_obj_order'].GetIntValue().size() " << BrukerHM[(std::string) "ACQ_obj_order"].GetIntValue().size()
+ << " LoopStruct[3] : " << LoopStruct[3] << " * LoopStruct[1] : " << LoopStruct[1] << " = " << LoopStruct[3]*LoopStruct[1] << std::endl;
+ throw 7;
+ }
+ if (LoopStruct.size() < 4 ) throw 8;
for (int i =0 ;i<LoopStruct[3];i++)
AcqOrder.push_back((int) BrukerHM[(std::string) "ACQ_obj_order"].GetIntValue()[i*LoopStruct[1]]/LoopStruct[1]);
AcquisitionOrder=AcqOrder;
};
-std :: vector < std :: vector < double > > BrukerObjectVaryingProperties::getOrientation(int theValue) const{
- if (theValue <Orientation.size() && theValue >=0)return Orientation[theValue];
- else throw 0;
+std :: vector < std :: vector < double > > BrukerObjectVaryingProperties::getOrientation(unsigned int theValue) const {
+ if (theValue < Orientation.size())return Orientation[theValue];
+ //else throw 9;
+ else throw BrukerSizeException("Orientation", theValue, Orientation.size() );
}
-/*void BrukerObjectVaryingProperties::setOrientation( std :: vector < double > & theValue1,const std::vector< int >& theValue2)
+/*void BrukerObjectVaryingProperties::computeOrientation( std :: vector < double > & theValue1,const std::vector< int >& theValue2)
{
- if (theValue1.size() != theValue2[3]*9) throw 0;
- if (theValue2.size() < 4 ) throw 0;
+ if (theValue1.size() != theValue2[3]*9) throw 10;
+ if (theValue2.size() < 4 ) throw 11;
int counter=0;
for(int i=0;i<theValue2[3];i++){
for(int j=0;j<3;j++){
}
}*/
-void BrukerObjectVaryingProperties::setOrientation(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct){
- if (BrukerHM[(std::string) "ACQ_grad_matrix"].GetDoubleValue().size() != LoopStruct[3]*9) throw 0;
- if (LoopStruct.size() < 4 ) throw 0;
-
+void BrukerObjectVaryingProperties::computeOrientation(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct){
+ if (BrukerHM[(std::string) "ACQ_grad_matrix"].GetDoubleValue().size() != LoopStruct[3]*9) throw 12;
+ if (LoopStruct.size() < 4 )
+ //throw 13;
+ throw BrukerSizeException("LoopStruct", 4, LoopStruct.size() );
+
std::vector<double> Temp1D(3,0.0);
std::vector<std::vector<double> > Temp2D;
std::vector<std::vector<std::vector<double> > > Temp3D;
Orientation=Temp3D;
};
-double BrukerObjectVaryingProperties::getPositionTimePerNR(int theValue) const{
- if (theValue <PositionTimePerNR.size() && theValue >=0) return PositionTimePerNR[theValue];
- else throw 0;
+double BrukerObjectVaryingProperties::getPositionTimePerNR(unsigned int theValue) const{
+ if (theValue <PositionTimePerNR.size() ) return PositionTimePerNR[theValue];
+ else throw 14;
}
-void BrukerObjectVaryingProperties::setPositionTimePerNR(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct){
+void BrukerObjectVaryingProperties::computePositionTimePerNR(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct){
double FloatPositionTimePerNR=BrukerHM[(std::string) "ACQ_repetition_time"].GetDoubleValue()[0];
int i=0;
int NA=BrukerHM[(std::string) "NA"].GetIntValue()[0];
double temp;
/*
- les loop de 0 a 3 ne sont pas conceres par le temps car ils creent presque systematiquement
-un melange temporel des donnees, c'est pour cela que je ne calcule q'un temps moyen a partir de celles -ci
+ les loop de 0 a 3 ne sont pas concernes par le temps car ils creent presque systematiquement
+ un melange temporel des donnees, c'est pour cela que je ne calcule qu'un temps moyen a partir de celles -ci
*/
for (i=4; i<(LoopStruct.size()-1);i++)
{
if (BrukerHM[(std::string) "ACQ_temporal_delay"].GetDoubleValue().size()!=1&& BrukerHM[(std::string) "ACQ_temporal_delay"].GetDoubleValue().size()!=(LoopStruct.back()-1))
{
- throw 0;
+ throw 15;
}
if (BrukerHM[(std::string) "ACQ_temporal_delay"].GetDoubleValue().size()!=1&& BrukerHM[(std::string) "ACQ_temporal_delay"].GetDoubleValue().size()==(LoopStruct.back()-1))
{
/*!
\fn BrukerObjectVaryingProperties::init(std::map<std::string, BrukerFieldData> BrukerHM,std::vector<int> LoopStruct)
*/
-bool BrukerObjectVaryingProperties::init(std::map<std::string, BrukerFieldData> & BrukerHM, std::vector<int> & LoopStruct)
+bool BrukerObjectVaryingProperties::init(std::map<std::string, BrukerFieldData> &BrukerHM, std::vector<int> &LoopStruct)
{
- setAcquisitionOrder( BrukerHM, LoopStruct);
- setOrientation(BrukerHM, LoopStruct);
- setPositionP(BrukerHM);
- setPositionR(BrukerHM);
- setPositionS(BrukerHM);
- setPositionTimePerNR(BrukerHM, LoopStruct);
- setTE(BrukerHM);
-
+ try {
+ computeAcquisitionOrder (BrukerHM, LoopStruct);
+ computeOrientation (BrukerHM, LoopStruct);
+ computePositionP (BrukerHM);
+ computePositionR (BrukerHM);
+ computePositionS (BrukerHM);
+ computePositionTimePerNR(BrukerHM, LoopStruct);
+ computeTE (BrukerHM);
+ }
+ catch (int i)
+ {
+ std::cout << "Failure during BrukerObjectVaryingProperties::init err code : " << i << std::endl;
+ if (i==7)
+ std::cout << "Probabely non standard acquisition (extra loop not yet dealt with)" << std::endl;
+ return false;
+ }
+ catch (...)
+ {
+ std::cout << "Failure during BrukerObjectVaryingProperties::init " << std::endl;
+ return false;
+ }
+
return true;
}
git://git.creatis.insa-lyon.fr / creaBruker.git / blobdiff