#3107 BBTK Bug New Normal - branch vtk7itk4 compilation with vtk7

[bbtk.git] / packages / gdcmvtk / src / bbgdcmvtkGetXCoherentInfoGdcmReader.cxx

diff --git a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
index 550148b057ad8affa7f220bfa146ec2aa8611d42..c1d16ba58fb15afc84ccce9badb0f3705362fa51 100644 (file)
--- a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
+++ b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
@@ -59,14 +59,21 @@ vtkImageData* GetXCoherentInfoGdcmReader::CreateDefaultImage()
        sizeZ = 1;
        vtkImageData *newImage = vtkImageData::New();
        newImage->Initialize();
-       newImage->SetScalarTypeToUnsignedChar();
        newImage->SetSpacing( 1,1,1 );
        newImage->SetDimensions(  sizeX,sizeY,sizeZ );
-       newImage->SetWholeExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
        newImage->SetExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+       newImage->SetWholeExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
+       newImage->SetScalarTypeToUnsignedChar();
        newImage->SetNumberOfScalarComponents(1);
        newImage->AllocateScalars();
        newImage->Update();
+#else
+       newImage->AllocateScalars(VTK_UNSIGNED_CHAR,1);
+#endif
+
        memset ( (void*)newImage->GetScalarPointer(), 0, sizeX*sizeY*1 );
        for (i=0; i<sizeX; i++)
        {
@@ -80,9 +87,17 @@ vtkImageData* GetXCoherentInfoGdcmReader::CreateDefaultImage()
 #if defined USE_GDCM
 void GetXCoherentInfoGdcmReader::Process()
 {
+
  // Read the *first* image file (a SET of file names is given as input) 
    f = GDCM_NAME_SPACE::File::New();
-   f->SetFileName( bbGetInputIn()[0] );
+
+       if ( bbGetInputIn().size()!=0 )
+       {
+               f->SetFileName( bbGetInputIn()[0] );
+       } else {
+               f->SetFileName( "" );
+       } // if
+   
    bool res = f->Load();  
    if ( !res )
    {
@@ -90,7 +105,7 @@ void GetXCoherentInfoGdcmReader::Process()
        f->Delete();
        bbSetOutputOut( CreateDefaultImage() );
        return;
-   }
+   } // if res
  // Get info from the first image file
    int i;
    std::vector<double> v_iop;
@@ -98,7 +113,9 @@ void GetXCoherentInfoGdcmReader::Process()
    f->GetImageOrientationPatient(iop);
    
    for(i=0; i< 6; i++)
+       {
       v_iop.push_back(iop[i]);
+       } // for i
    bbSetOutputIOP(v_iop );
  
    std::vector<double> v_ipp;
@@ -106,7 +123,9 @@ void GetXCoherentInfoGdcmReader::Process()
    f->GetImagePositionPatient(ipp);
    
    for(i=0; i< 3; i++)
+       {
       v_ipp.push_back(ipp[i]);
+       } // for i
    bbSetOutputIPP(v_ipp );
 
 // Add *all the files* to the SerieHelper
@@ -118,7 +137,8 @@ void GetXCoherentInfoGdcmReader::Process()
                                         ++it)
    {
       sh->AddFileName(*it);
-   }
+   } //for vector
+
 
    GDCM_NAME_SPACE::FileList::const_iterator it;
    GDCM_NAME_SPACE::FileList *l;
@@ -127,10 +147,10 @@ void GetXCoherentInfoGdcmReader::Process()
    l = sh->GetFirstSingleSerieUIDFileSet();
 
    int nbFiles;
-   double zspacing = 0.;
-   nbFiles = l->size() ;
+   double zspacing     = 0.;
+   nbFiles                     = l->size() ;
    sh->OrderFileList(l); // this one should compute the *actual* Z Spacing!
-   zspacing = sh->GetZSpacing();
+   zspacing            = sh->GetZSpacing();
    std::vector<double> v_pixelspacing;
    v_pixelspacing.push_back( f->GetXSpacing() );
    v_pixelspacing.push_back( f->GetYSpacing() );
@@ -139,23 +159,20 @@ void GetXCoherentInfoGdcmReader::Process()
 //      v_pixelspacing.push_back(f->GetZSpacing());
 //   }
    bbSetOutputPixelSpacing(v_pixelspacing);
-
    if (reader!=NULL)
    { 
       reader->Delete();
-      reader=NULL;
+      reader = NULL;
    }
    reader = vtkGdcmReader::New();
-       
        //EED 21 mars 2012  FLIP probleme  ..PLOP..
        reader->SetFlipY(false);
-
-       
    //reader->SetFileName( bbGetInputIn().c_str() );
    reader->SetCoherentFileList(l);
    reader->Update();
    reader->GetOutput();
 
+printf("EED GetXCoherentInfoGdcmReader::Process \n");
    bbSetOutputOut( reader->GetOutput() );
 }
 #endif
@@ -188,7 +205,9 @@ void GetXCoherentInfoGdcmReader::Process()
    gdcm::Element<gdcm::VR::DS,gdcm::VM::VM6> iop;
    iop.Read( ss );
    for(i=0; i< 6; i++)
-      v_iop.push_back((float)(iop[i]));
+       {
+       v_iop.push_back((float)(iop[i]));
+       }
    bbSetOutputIOP(v_iop );
  
   std::vector<double> v_ipp;
@@ -196,8 +215,10 @@ void GetXCoherentInfoGdcmReader::Process()
    deIpp.GetValue().Print(ss);
    gdcm::Element<gdcm::VR::DS,gdcm::VM::VM3> ipp;
    ipp.Read( ss );
-         for(i=0; i< 3; i++)
+       for(i=0; i< 3; i++)
+       {
                v_ipp.push_back((float)(ipp[i]));
+       } // for 3
    bbSetOutputIPP(v_ipp );
 
 // Add *all the files* to the IPPsorter
@@ -257,11 +278,17 @@ void GetXCoherentInfoGdcmReader::bbUserInitializeProcessing()
 void GetXCoherentInfoGdcmReader::bbUserFinalizeProcessing()
 {
    if(reader)
+       {
       reader->Delete();
+       } // if reader
    if(f)
+       {
       f->Delete();
+       } // if f
    if(sh)
+       {
       sh->Delete();      
+       } // if sh
 }
 #endif
 
@@ -269,7 +296,9 @@ void GetXCoherentInfoGdcmReader::bbUserFinalizeProcessing()
 void GetXCoherentInfoGdcmReader::bbUserFinalizeProcessing()
 {
    if(reader)
+       {
       reader->Delete();
+       }
 }
 #endif