+/*
# ---------------------------------------------------------------------
#
# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
BBTK_ADD_BLACK_BOX_TO_PACKAGE(gdcmvtk,GetXCoherentInfoGdcmReader)
BBTK_BLACK_BOX_IMPLEMENTATION(GetXCoherentInfoGdcmReader,bbtk::AtomicBlackBox);
+
+
+vtkImageData* GetXCoherentInfoGdcmReader::CreateDefaultImage()
+{
+ int i;
+ int sizeX, sizeY, sizeZ;
+ sizeX = 200;
+ sizeY = sizeX;
+ sizeZ = 1;
+ vtkImageData *newImage = vtkImageData::New();
+ newImage->Initialize();
+ newImage->SetSpacing( 1,1,1 );
+ newImage->SetDimensions( sizeX,sizeY,sizeZ );
+ newImage->SetExtent(0, sizeX-1,0,sizeY-1,0,sizeZ-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, sizeX-1,0,sizeY-1,0,sizeZ-1 );
+ newImage->SetScalarTypeToUnsignedChar();
+ newImage->SetNumberOfScalarComponents(1);
+ newImage->AllocateScalars();
+ newImage->Update();
+#else
+ newImage->AllocateScalars(VTK_UNSIGNED_CHAR,1);
+#endif
+
+ memset ( (void*)newImage->GetScalarPointer(), 0, sizeX*sizeY*1 );
+ for (i=0; i<sizeX; i++)
+ {
+ newImage->SetScalarComponentFromDouble(i,i,0, 0, 255 );
+ newImage->SetScalarComponentFromDouble(i,sizeY-1-i,0, 0, 255 );
+ } // for i
+ return newImage;
+}
+
+
#if defined USE_GDCM
void GetXCoherentInfoGdcmReader::Process()
{
+
// Read the *first* image file (a SET of file names is given as input)
f = GDCM_NAME_SPACE::File::New();
- f->SetFileName( bbGetInputIn()[0] );
+
+ if ( bbGetInputIn().size()!=0 )
+ {
+ f->SetFileName( bbGetInputIn()[0] );
+ } else {
+ f->SetFileName( "" );
+ } // if
+
bool res = f->Load();
if ( !res )
{
- f->Delete();
- bbSetOutputOut(0);
- return;
- }
+ printf("EED GetXCoherentInfoGdcmReader::Process resultImage NULL\n");
+ f->Delete();
+ bbSetOutputOut( CreateDefaultImage() );
+ return;
+ } // if res
// Get info from the first image file
int i;
std::vector<double> v_iop;
f->GetImageOrientationPatient(iop);
for(i=0; i< 6; i++)
+ {
v_iop.push_back(iop[i]);
+ } // for i
bbSetOutputIOP(v_iop );
std::vector<double> v_ipp;
f->GetImagePositionPatient(ipp);
for(i=0; i< 3; i++)
+ {
v_ipp.push_back(ipp[i]);
+ } // for i
bbSetOutputIPP(v_ipp );
// Add *all the files* to the SerieHelper
++it)
{
sh->AddFileName(*it);
- }
+ } //for vector
+
GDCM_NAME_SPACE::FileList::const_iterator it;
GDCM_NAME_SPACE::FileList *l;
l = sh->GetFirstSingleSerieUIDFileSet();
int nbFiles;
- double zspacing = 0.;
- nbFiles = l->size() ;
+ double zspacing = 0.;
+ nbFiles = l->size() ;
sh->OrderFileList(l); // this one should compute the *actual* Z Spacing!
- zspacing = sh->GetZSpacing();
+ zspacing = sh->GetZSpacing();
std::vector<double> v_pixelspacing;
v_pixelspacing.push_back( f->GetXSpacing() );
v_pixelspacing.push_back( f->GetYSpacing() );
// v_pixelspacing.push_back(f->GetZSpacing());
// }
bbSetOutputPixelSpacing(v_pixelspacing);
-
if (reader!=NULL)
{
reader->Delete();
- reader=NULL;
+ reader = NULL;
}
reader = vtkGdcmReader::New();
-
//EED 21 mars 2012 FLIP probleme ..PLOP..
reader->SetFlipY(false);
-
-
//reader->SetFileName( bbGetInputIn().c_str() );
reader->SetCoherentFileList(l);
reader->Update();
reader->GetOutput();
+printf("EED GetXCoherentInfoGdcmReader::Process \n");
bbSetOutputOut( reader->GetOutput() );
}
#endif
{
// Read the *first* image file (a SET of file names is given as input)
gdcm::Reader *read = new gdcm::Reader();
- reader->SetFileName( bbGetInputIn()[0].c_str());
+ reader->SetFileName( bbGetInputIn()[0].c_str() );
bool res = read->Read();
- if ( !res )
- {
- delete read;
- bbSetOutputOut(0);
- return;
- }
+ if ( !res )
+ {
+ delete read;
+ bbSetOutputOut(NULL);
+ return;
+ }
+
+
// Get info from the first image file
const gdcm::File &f = read->GetFile();
int i;
gdcm::Element<gdcm::VR::DS,gdcm::VM::VM6> iop;
iop.Read( ss );
for(i=0; i< 6; i++)
- v_iop.push_back((float)(iop[i]));
+ {
+ v_iop.push_back((float)(iop[i]));
+ }
bbSetOutputIOP(v_iop );
std::vector<double> v_ipp;
deIpp.GetValue().Print(ss);
gdcm::Element<gdcm::VR::DS,gdcm::VM::VM3> ipp;
ipp.Read( ss );
- for(i=0; i< 3; i++)
+ for(i=0; i< 3; i++)
+ {
v_ipp.push_back((float)(ipp[i]));
+ } // for 3
bbSetOutputIPP(v_ipp );
// Add *all the files* to the IPPsorter
}
reader->SetFileNames(files);
reader->Update();
- reader->GetOutput();
bbSetOutputOut( reader->GetOutput() );
}
#endif
void GetXCoherentInfoGdcmReader::bbUserFinalizeProcessing()
{
if(reader)
+ {
reader->Delete();
+ } // if reader
if(f)
+ {
f->Delete();
+ } // if f
if(sh)
+ {
sh->Delete();
+ } // if sh
}
#endif
void GetXCoherentInfoGdcmReader::bbUserFinalizeProcessing()
{
if(reader)
+ {
reader->Delete();
+ }
}
#endif