Program: bbtk
Module: $RCSfile: bbitkImageSeriesReader.cxx,v $
Language: C++
- Date: $Date: 2008/11/26 10:13:32 $
- Version: $Revision: 1.7 $
+ Date: $Date: 2009/06/24 08:08:57 $
+ Version: $Revision: 1.10 $
=========================================================================*/
/* ---------------------------------------------------------------------
BBTK_ADD_BLACK_BOX_TO_PACKAGE(itk,ImageSeriesReader);
+
+ //-----------------------------------------------------------------
+ void ImageSeriesReader::bbUserSetDefaultValues()
+ {
+ bbSetInputXSpacing(-1.0);
+ bbSetInputYSpacing(-1.0);
+ bbSetInputZSpacing(-1.0);
+ }
+
+ //-----------------------------------------------------------------
+ void ImageSeriesReader::bbUserInitializeProcessing()
+ {
+ }
+
+ //-----------------------------------------------------------------
+ void ImageSeriesReader::bbUserFinalizeProcessing()
+ {
+ }
+
+
+
void ImageSeriesReader::Read()
{
+std::cout << "--------------------------------------------------- ImageSeriesReader::Read( NO template)" << std::endl;
const std::vector<std::string>& filenames = bbGetInputFileNames();
if (!filenames.size())
{
p->Allocate();
p->Register();
bbSetOutputOut(p.GetPointer());
+std::cout << "--------------------------------------------------- ImageSeriesReader::Read( NO image found)" << std::endl;
return;
//bbtkError("Void vector passed to "<<bbGetFullName());
}
std::string filename = filenames[0];
-
+ std::cout << "--------------------------------------------------- size " << filenames.size() << std::endl;
+std::cout << "--------------------------------------------------- filenames[0] : " << filenames[0]<< std::endl;
+std::cout << "--------------------------------------------------- filename.c_str : " << filename.c_str()<< std::endl;
+
itk::ImageIOBase::Pointer genericReader =
itk::ImageIOFactory::CreateImageIO(filename.c_str(),
itk::ImageIOFactory::ReadMode);
genericReader->SetFileName(filename.c_str());
genericReader->ReadImageInformation();
+ // a stack of 2D images will result as a 3D image // JPRx
int plusUn;
if (filenames.size()>1)
plusUn = 1;
template<class T>
void ImageSeriesReader::Read()
{
+std::cout << "--------------------------------------------------- ImageSeriesReader::Read()" << std::endl;
bbtkDebugMessageInc("Core",9,"bbitk::ImageSeriesReader<"
<<bbtk::TypeName<T>()
<<">::Read()"<<std::endl);
typename itkReaderType::Pointer reader = itkReaderType::New();
const std::vector<std::string>& filenames = bbGetInputFileNames();
- reader->SetFileNames(filenames);
+
+std::cout << "--------------------------------------------------- size " << filenames.size() << std::endl;
+ for (int i = 0; i< filenames.size(); i++)
+ std::cout << "-- [" <<filenames[i] << "]" << std::endl;
+
+ reader->SetFileNames(filenames);
+
try { reader->Update(); }
catch( std::exception& e )
{
bbtkError("could not read image series : "<<e.what());
}
+ // JPRx
+ typename itkImageType::SpacingType spacingJPRx;
+
+ bool spacingToBeSet = false;
+ if (bbGetInputXSpacing() > 0.)
+ {
+ spacingToBeSet = true;
+ spacingJPRx[0]= bbGetInputXSpacing();
+ }
+
+ if (bbGetInputYSpacing() > 0.)
+ {
+ spacingToBeSet = true;
+ spacingJPRx[1]= bbGetInputYSpacing();
+ }
+
+ if (bbGetInputZSpacing() > 0.)
+ {
+ spacingToBeSet = true;
+ spacingJPRx[2]= bbGetInputZSpacing();
+ }
+
+ if (spacingToBeSet)
+ reader->GetOutput()->SetSpacing(spacingJPRx);
+ // JPRx
+
reader->GetOutput()->Register();
// if (bbGetOutputOut())
bbSetOutputOut ( reader->GetOutput() );
bbtkDebugDecTab("Core",9);
}
-
}
// eo namespace bbtk