#File clitkCalculateTRE.ggo
-Package "clitkCalculateTRE"
+package "clitkCalculateTRE"
version "1.0"
purpose "Calculate TRE: give a reference point list and 1 or more target point lists. In case of the latter, the number of DVF (or the size of the 4th D) given should match the number of lists. Use --shipFirst to skip the first phase of a 4D DVF. General summarizes for all points (mean, SD, max) in magnitude and par component. Tre and warp gives all values for all points. "
option "ref" - "List of points in reference" string yes
option "input" i "Lists of points in targets" string multiple yes
-option "vf" - "Input deformation fields" string multiple yes
+option "vf" - "Input deformation fields" string multiple no
+option "coeff" - "Input coefficient images" string multiple no
option "skip" - "Skip a phase of a 4D DVF" int no
section "Interpolation"