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[clitk.git] / registration / clitkCalculateTREGenericFilter.h

diff --git a/registration/clitkCalculateTREGenericFilter.h b/registration/clitkCalculateTREGenericFilter.h
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+++ b/registration/clitkCalculateTREGenericFilter.h
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+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+#ifndef clitkCalculateTREGenericFilter_h
+#define clitkCalculateTREGenericFilter_h
+
+/* =================================================
+ * @file   clitkCalculateTREGenericFilter.h
+ * @author 
+ * @date   
+ * 
+ * @brief 
+ * 
+ ===================================================*/
+
+
+// clitk include
+#include "clitkIO.h"
+#include "clitkCommon.h"
+#include "clitkCalculateTRE_ggo.h"
+#include "clitkGenericVectorInterpolator.h"
+#include "clitkPointListWriter.h"
+#include "clitkPointListReader.h"
+#include "clitkDeformationListStatisticsFilter.h"
+#include "clitkList.h"
+
+//itk include
+#include "itkLightObject.h"
+#include "itkExtractImageFilter.h"
+
+//general
+#include <iomanip>
+
+namespace clitk 
+{
+
+
+  class ITK_EXPORT CalculateTREGenericFilter : public itk::LightObject
+  {
+  public:
+    //----------------------------------------
+    // ITK
+    //----------------------------------------
+    typedef CalculateTREGenericFilter                   Self;
+    typedef itk::LightObject                   Superclass;
+    typedef itk::SmartPointer<Self>            Pointer;
+    typedef itk::SmartPointer<const Self>      ConstPointer;
+   
+    // Method for creation through the object factory
+    itkNewMacro(Self);  
+
+    // Run-time type information (and related methods)
+    itkTypeMacro( CalculateTREGenericFilter, LightObject );
+
+
+    //----------------------------------------
+    // Typedefs
+    //----------------------------------------
+
+
+    //----------------------------------------
+    // Set & Get
+    //----------------------------------------    
+    void SetArgsInfo(const args_info_clitkCalculateTRE& a)
+    {
+      m_ArgsInfo=a;
+      m_Verbose=m_ArgsInfo.verbose_flag;
+      m_InputFileName=m_ArgsInfo.vf_arg[0];
+    }
+    
+    
+    //----------------------------------------  
+    // Update
+    //----------------------------------------  
+    void Update();
+
+  protected:
+
+    //----------------------------------------  
+    // Constructor & Destructor
+    //----------------------------------------  
+    CalculateTREGenericFilter();
+    ~CalculateTREGenericFilter() {};
+
+    
+    //----------------------------------------  
+    // Templated members
+    //----------------------------------------  
+    template <unsigned int Dimension,unsigned int Components> void ReadVectorFields(void);
+    template <unsigned int Dimension,unsigned int Components> void ProcessVectorFields(std::vector< typename itk::Image<itk::Vector<float, Components>, Dimension>::Pointer > dvfs, char** filenames);
+    template <unsigned int Dimension> void UpdateWithDim( std::vector<typename itk::Image<itk::Vector<float, Dimension>, Dimension>::Pointer > dvfs,  std::vector<std::string> filenames);
+    
+
+    //----------------------------------------  
+    // Data members
+    //----------------------------------------
+    args_info_clitkCalculateTRE m_ArgsInfo;
+    bool m_Verbose;
+    std::string m_InputFileName;
+
+  };
+
+
+} // end namespace clitk
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "clitkCalculateTREGenericFilter.txx"
+#endif
+
+#endif // #define clitkCalculateTREGenericFilter_h