Add quotes in case variables are not defined

[clitk.git] / registration / clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD.txx

diff --git a/registration/clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD.txx b/registration/clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD.txx
index 1d2b8cc81b108f9a487b83406f9d22164d0c0e89..769171b87dea70e25b491816e98a4634bb212533 100644 (file)
--- a/registration/clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD.txx
+++ b/registration/clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD.txx
@@ -3,7 +3,7 @@
 
   Authors belong to:
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
 
 #ifndef __clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD_txx
 #define __clitkOptNormalizedCorrelationImageToImageMetricFor3DBLUTFFD_txx
@@ -159,7 +159,7 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
     delete [] m_ThreaderDerivativeF;
   }
   m_ThreaderDerivativeF = new DerivativeType[this->m_NumberOfThreads];
-  for(unsigned int threadID=0; threadID<this->m_NumberOfThreads; threadID++) {
+  for(ThreadIdType threadID=0; threadID<this->m_NumberOfThreads; threadID++) {
     m_ThreaderDerivativeF[threadID].SetSize( this->m_NumberOfParameters );
   }
 
@@ -167,7 +167,7 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
     delete [] m_ThreaderDerivativeM;
   }
   m_ThreaderDerivativeM = new DerivativeType[this->m_NumberOfThreads];
-  for(unsigned int threadID=0; threadID<this->m_NumberOfThreads; threadID++) {
+  for(ThreadIdType threadID=0; threadID<this->m_NumberOfThreads; threadID++) {
     m_ThreaderDerivativeM[threadID].SetSize( this->m_NumberOfParameters );
   }
 }
@@ -177,7 +177,7 @@ template < class TFixedImage, class TMovingImage  >
 inline bool
 NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
 ::GetValueThreadProcessSample(
-  unsigned int threadID,
+  ThreadIdType threadID,
   unsigned long fixedImageSample,
   const MovingImagePointType & itkNotUsed(mappedPoint),
   double movingImageValue) const
@@ -219,7 +219,9 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
 
   // Set up the parameters in the transform
   this->m_Transform->SetParameters( parameters );
+#if ITK_VERSION_MAJOR < 4
   this->m_Parameters = parameters;
+#endif
 
   // MUST BE CALLED TO INITIATE PROCESSING
   this->GetValueMultiThreadedInitiate();
@@ -294,7 +296,9 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
 
   // Set up the parameters in the transform
   this->m_Transform->SetParameters( parameters );
+#if ITK_VERSION_MAJOR < 4
   this->m_Parameters = parameters;
+#endif
 
   // MUST BE CALLED TO INITIATE PROCESSING
   this->GetValueMultiThreadedInitiate();
@@ -354,7 +358,7 @@ template < class TFixedImage, class TMovingImage  >
 inline bool
 NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
 ::GetValueAndDerivativeThreadProcessSample(
-  unsigned int threadID,
+  ThreadIdType threadID,
   unsigned long fixedImageSample,
   const MovingImagePointType & itkNotUsed(mappedPoint),
   double movingImageValue,
@@ -381,7 +385,12 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
   }
 
   // Jacobian should be evaluated at the unmapped (fixed image) point.
+#if ITK_VERSION_MAJOR >= 4
+  TransformJacobianType jacobian;
+  transform->ComputeJacobianWithRespectToParameters( fixedImagePoint, jacobian );
+#else
   const TransformJacobianType & jacobian = transform->GetJacobian( fixedImagePoint );
+#endif
 
 //          for(unsigned int par=0; par<this->m_NumberOfParameters; par++)
 //            {
@@ -446,7 +455,9 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
 
   // Set up the parameters in the transform
   this->m_Transform->SetParameters( parameters );
+#if ITK_VERSION_MAJOR < 4
   this->m_Parameters = parameters;
+#endif
 
   //We need the sums and the value to be calculated first
   value=this->ComputeSums(parameters);
@@ -457,16 +468,16 @@ NormalizedCorrelationImageToImageMetricFor3DBLUTFFD<TFixedImage,TMovingImage>
   }
   memset( derivative.data_block(),
           0,
-          this->m_NumberOfParameters * sizeof(ITK_TYPENAME DerivativeType::ValueType) );
+          this->m_NumberOfParameters * sizeof(typename DerivativeType::ValueType) );
 
-  for( unsigned int threadID = 0; threadID<this->m_NumberOfThreads; threadID++ ) {
+  for( ThreadIdType threadID = 0; threadID<this->m_NumberOfThreads; threadID++ ) {
     memset( m_ThreaderDerivativeF[threadID].data_block(),
             0,
-            this->m_NumberOfParameters * sizeof(ITK_TYPENAME DerivativeType::ValueType) );
+            this->m_NumberOfParameters * sizeof(typename DerivativeType::ValueType) );
 
     memset( m_ThreaderDerivativeM[threadID].data_block(),
             0,
-            this->m_NumberOfParameters * sizeof(ITK_TYPENAME DerivativeType::ValueType) );
+            this->m_NumberOfParameters * sizeof(typename DerivativeType::ValueType) );
   }
 
   // MUST BE CALLED TO INITIATE PROCESSING