#! /bin/bash +x
-select_contour_gui()
-{
- local roi_list=$@
- roi=`zenity --list --title="Available Contours" --column="Please choose a contour:" $roi_list`
- case $? in
- 0)
- if [ -z $roi ]
- then
- zenity --warning --text="You must choose one contour."
- select_contour $roi_list
- else
- rtstruct_roi_name=$roi
- fi;;
- 1)
- if zenity --question --text="Do you really wish to quit?"
- then
- exit
- else
- select_contour $roi_list
- fi;;
- -1)
- zenity --error --text="Unexpected error. Please relaunch the application."
- exit;;
- esac
-}
+source `dirname $0`/midp_common.sh
-select_contour()
-{
- local roi_list=$@
- echo "Available Contours:"
- for r in $roi_list; do
- echo $r
- done
-
- echo "Please choose a contour number:"
- read rtstruct_roi_number
-}
-
-select_roi()
-{
- rtstruct_roi_name_list=( `clitkDicomInfo ${rtstruct_file} | grep "3006|0026" | cut -d '[' -f 4 | sed 's/| V 3006|0026[LO] [ROI Name] \|]//'` )
- rtstruct_roi_number_list=( `clitkDicomInfo ${rtstruct_file} | grep "3006|0022" | cut -d '[' -f 4 | sed 's/| V 3006|0026[LO] [ROI Number] \|]//'` )
- rtstruct_roi_list=( )
- for i in $(seq 0 1 $(( ${#rtstruct_roi_name_list[@]} - 1 ))); do
- rtstruct_roi_list[$i]=${rtstruct_roi_number_list[$i]}:${rtstruct_roi_name_list[$i]}
- done
-
- if [ $gui_mode = 1 ]; then
- select_contour_gui ${rtstruct_roi_list[@]}
- rtstruct_roi=`echo ${rtstruct_roi_name} | cut -d ':' -f 1`
- rtstruct_roi_name=`echo ${rtstruct_roi_name} | cut -d ':' -f 2`
- else
- select_contour ${rtstruct_roi_list[@]}
- rtstruct_roi=$rtstruct_roi_number
- rtstruct_roi_name=${rtstruct_roi_name_list[$(( $rtstruct_roi_number - 1))]}
- fi
-}
############# main
if echo $* | grep "\-h"; then
- echo Usage: calculate_motion_amplitude.sh { RTSTRUCT_FILE REFERENCE_IMAGE | --gui }
-
+ echo Usage: calculate_motion_amplitude.sh { REFERENCE_IMAGE RTSTRUCT_FILE [ RTSTRUCT_ROI | --gui ] } | --gui
+ echo " RTSTRUCT_REF_IMAGE: mhd of the reference image used in the contour delineation"
+ echo " RTSTRUCT_FILE: dicom with contours"
+ echo " RTSTRUCT_ROI: number of the contour whose motion to analyze"
+ echo " --gui: use GUI to select files"
exit 0
fi
-rtstruct_roi=0
+rtstruct_roi=
if echo $* | grep "\-\-gui" > /dev/null 2>&1; then
- if [ $# != 1 ]; then
+ gui_mode=1
+ if [ $# = 1 ]; then
+ rtstruct_ref_image=`zenity --file-selection --title="Select Reference Image."`
+ rtstruct_file=`zenity --file-selection --title="Select RT Struct file."`
+ select_roi
+ elif [ $# = 3 ]; then
+ rtstruct_ref_image=$1
+ rtstruct_file=$2
+ select_roi
+ else
echo Invalid arguments. Type \'`basename $0` -h\' for help
exit -1
fi
- gui_mode=1
- rtstruct_file=`zenity --file-selection --title="Select RT Struct file."`
- select_roi
- rtstruct_ref_image=`zenity --file-selection --title="Select Reference Image."`
else
- if [ $# != 2 ]; then
+ gui_mode=0
+ rtstruct_ref_image=$1
+ rtstruct_file=$2
+ if [ $# = 2 ]; then
+ select_roi
+ elif [ $# = 3 ]; then
+ rtstruct_roi=$3
+ rtstruct_roi_name=$rtstruct_roi
+ else
echo Invalid arguments. Type \'`basename $0` -h\' for help
exit -1
fi
- gui_mode=0
- rtstruct_file=$1
- rtstruct_ref_image=$2
- select_roi
fi