Debug RTStruct conversion with empty struc

[clitk.git] / scripts / create_mhd_4D.sh

diff --git a/scripts/create_mhd_4D.sh b/scripts/create_mhd_4D.sh
deleted file mode 100755 (executable)
index 00df85c..0000000
--- a/scripts/create_mhd_4D.sh
+++ /dev/null
@@ -1,114 +0,0 @@
-#!/bin/sh
-
-
-write_mhd_4D()
-{
-  cat $orig | sed "s/NDims = .*/NDims = 4/
-                 s/TransformMatrix = .*/TransformMatrix = 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1/
-                 /Offset/ s/.*/& 0/
-                 /CenterOfRotation/ s/.*/& 0/
-                 s/AnatomicalOrientation = .*/AnatomicalOrientation = ????/
-                 /ElementSpacing/ s/.*/& 1/
-                 /DimSize/ s/.*/& $nbph/
-                 s/ElementDataFile = .*/ElementDataFile = LIST/" > "$1/$file_name_4D"
-  
-  for ph in $listph
-  do
-    ph=`basename $ph`
-    echo "$ph" >> "$1/$file_name_4D"
-  done
-}
-
-#################################################
-# create_mhd_4D        argument : repertoire   #
-#################################################
-if [ $# -lt 1 ]
-then
-  echo "Usage: create_mhd_4D.sh DIRECTORY"
-  exit 1
-fi
-
-nb_phase_file=`find $1 -iname "*[0-9]*.mhd" -o -iname "*[0-9]*\]*.mhd" | wc -l`
-if [ $nb_phase_file = 0 ]
-then
-  echo "Error: no phase found"
-  exit 1
-fi
-
-########## CT #########
-
-list_pattern=""
-list_phase_file=`find $1 -iname "*[0-9]*.mhd"`
-for phase_file in $list_phase_file
-do
-  phase_file_name=`basename $phase_file`
-  if [[ ! -z `echo "$phase_file_name" | grep ","` ]]
-  then
-    prefix=`echo $phase_file_name | sed "s/,_.*/,_/"`
-  else
-    prefix="NONE"
-  fi
-  if [[ -z `echo "$list_pattern" | grep "$prefix"` ]]
-  then
-    list_pattern="$list_pattern $prefix"
-  fi
-done
-
-
-for pattern in $list_pattern
-do
-
-  if [ "$pattern" = "NONE" ]
-  then
-    pattern=""
-  fi
-
-  nbph=`find $1 -iname "${pattern}*[0-9]*.mhd" | wc -l`
-  orig=`find $1 -iname "${pattern}*[0-9]*.mhd" | sort | head -n 1`
-  listph=`find $1 -iname "${pattern}*[0-9]*.raw" | sort`
-
-  file_name_4D="${pattern}_4D.mhd"
-  echo $file_name_4D
-
-  write_mhd_4D $1
-
-done
-
-
-############ PET ###########
-
-list_pattern=""
-list_phase_file=`find $1 -iname "*[0-9]*\]*.mhd"`
-for phase_file in $list_phase_file
-do
-  phase_file_name=`basename $phase_file`
-  if [[ ! -z `echo "$phase_file_name" | grep "[0-9]-.*\]"` ]]
-  then
-    prefix=`echo $phase_file_name | sed "s/.*[0-9]-/-/;s/\]_.*//"`
-  else
-    prefix="NONE"
-  fi
-  if [[ -z `echo "$list_pattern" | grep -- "$prefix"` ]]
-  then
-    list_pattern="$list_pattern $prefix"
-  fi
-done
-
-  
-for pattern in $list_pattern
-do
-
-  if [ "$pattern" = "NONE" ]
-  then
-    pattern=""
-  fi
-
-  nbph=`find $1 -iname "*[0-9]${pattern}\]*.mhd" | wc -l`
-  orig=`find $1 -iname "*[0-9]${pattern}\]*.mhd" | sort | head -n 1`
-  listph=`find $1 -iname "*[0-9]${pattern}\]*.raw" | sort`
-  
-  file_name_4D=`basename "$orig" | sed "s/[0-9]${pattern}\]/${pattern}\]/;s/_.mhd/_4D.mhd/"`
-
-  write_mhd_4D $1
-
-done