Debug RTStruct conversion with empty struc

[clitk.git] / scripts / create_mhd_4D.sh

diff --git a/scripts/create_mhd_4D.sh b/scripts/create_mhd_4D.sh
deleted file mode 100755 (executable)
index 70e21bb..0000000
--- a/scripts/create_mhd_4D.sh
+++ /dev/null
@@ -1,115 +0,0 @@
-#!/bin/sh
-
-
-write_mhd_4D()
-{
-  cat $orig | sed "s/NDims = .*/NDims = 4/
-                 s/TransformMatrix = .*/TransformMatrix = 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1/
-                 /Offset/ s/.*/& 0/
-                 /CenterOfRotation/ s/.*/& 0/
-                 s/AnatomicalOrientation = .*/AnatomicalOrientation = ????/
-                 /ElementSpacing/ s/.*/& 1/
-                 /DimSize/ s/.*/& $nbph/
-                 s/ElementDataFile = .*/ElementDataFile = LIST/" > "$1/$file_name_4D"
-  
-  for ph in $listph
-  do
-    ph=`basename $ph`
-    echo "$ph" >> "$1/$file_name_4D"
-  done
-}
-
-#################################################
-# create_mhd_4D        argument : repertoire   #
-#################################################
-if [ $# -lt 1 ]
-then
-  echo "Usage: create_mhd_4D.sh DIRECTORY"
-  exit 1
-fi
-
-nb_phase_file=`find $1 -maxdepth 1 -iname "*[0-9]*.mhd" | wc -l`
-if [ $nb_phase_file = 0 ]
-then
-  echo "No phase found in $1"
-  exit 1
-fi
-
-
-list_prefix=""
-list_phase_file=`find $1 -maxdepth 1 -iname "*[0-9]*.mhd"`
-for phase_file in $list_phase_file
-do
-  phase_file_name=`basename $phase_file`
-  if [[ ! -z `echo "$phase_file_name" | grep "__[0-9]"` ]]
-  then
-    prefix=`echo $phase_file_name | sed "s/__[0-9].*/__/"`
-  else
-    if [[ ! -z `echo "$phase_file_name" | grep "[0-9]-.*\]"` ]]
-    then
-      if [[ ! -z `echo "$phase_file_name" | grep "[0-9][0-9]-.*\]"` ]]
-      then
-       prefix=`echo $phase_file_name | sed "s/[0-9][0-9]-.*//"`
-      else
-       prefix=`echo $phase_file_name | sed "s/[0-9]-.*//"`
-      fi
-    else
-      prefix="NONE"
-    fi
-  fi
-
-  if [[ -z `echo "$list_prefix" | grep "$prefix"` ]]
-  then
-    list_prefix="$list_prefix $prefix"
-  fi
-done
-
-
-for prefix in $list_prefix
-do
-  if [ "$prefix" = "NONE" ]
-  then
-    prefix=""
-  fi
-
-  list_suffix=""
-  list_phase_file_prefix=`find $1 -maxdepth 1 -iname "${prefix}[0-9]*.mhd"`
-  for phase_file_prefix in $list_phase_file_prefix
-  do
-    phase_file_prefix_name=`basename $phase_file_prefix`
-    if [[ ! -z `echo "$phase_file_prefix_name" | grep "__[0-9]"` ]]
-    then
-      suffix="NONE"
-    else
-      if [[ ! -z `echo "$phase_file_prefix_name" | grep "[0-9]-.*\]"` ]]
-      then
-       suffix=`echo $phase_file_prefix_name | sed "s/.*[0-9]-//;s/_\.mhd//;s/\.mhd//"`
-      else
-       suffix="NONE"
-      fi
-    fi
-
-    if [[ -z `echo "$list_suffix" | grep "$suffix"` ]]
-    then
-      list_suffix="$list_suffix $suffix"
-    fi
-  done
-
-  for suffix in $list_suffix
-  do
-    if [ "$suffix" = "NONE" ]
-    then
-      suffix=""
-    fi
-    nbph=`find $1 -maxdepth 1 -iname "*${prefix}*[0-9]*${suffix}*.mhd" | wc -l`
-    orig=`find $1 -maxdepth 1 -iname "*${prefix}*[0-9]*${suffix}*.mhd" | sort | head -n 1`
-    listph=`find $1 -maxdepth 1 -iname ".*${prefix}.*[0-9].*${suffix}.*.*raw" -iregex ".*.z*raw" | sort`
-
-    file_name_4D="${prefix}4D${suffix}.mhd"
-    
-    write_mhd_4D $1
-
-  done
-
-done
-