+++ /dev/null
-#!/bin/sh
-
-
-write_mhd_4D()
-{
- cat $orig | sed "s/NDims = .*/NDims = 4/
- s/TransformMatrix = .*/TransformMatrix = 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1/
- /Offset/ s/.*/& 0/
- /CenterOfRotation/ s/.*/& 0/
- s/AnatomicalOrientation = .*/AnatomicalOrientation = ????/
- /ElementSpacing/ s/.*/& 1/
- /DimSize/ s/.*/& $nbph/
- s/ElementDataFile = .*/ElementDataFile = LIST/" > "$1/$file_name_4D"
-
- for ph in $listph
- do
- ph=`basename $ph`
- echo "$ph" >> "$1/$file_name_4D"
- done
-}
-
-#################################################
-# create_mhd_4D argument : repertoire #
-#################################################
-if [ $# -lt 1 ]
-then
- echo "Usage: create_mhd_4D.sh DIRECTORY"
- exit 1
-fi
-
-nb_phase_file=`find $1 -maxdepth 1 -iname "*[0-9]*.mhd" | wc -l`
-if [ $nb_phase_file = 0 ]
-then
- echo "No phase found in $1"
- exit 1
-fi
-
-
-list_prefix=""
-list_phase_file=`find $1 -maxdepth 1 -iname "*[0-9]*.mhd"`
-for phase_file in $list_phase_file
-do
- phase_file_name=`basename $phase_file`
- if [[ ! -z `echo "$phase_file_name" | grep "__[0-9]"` ]]
- then
- prefix=`echo $phase_file_name | sed "s/__[0-9].*/__/"`
- else
- if [[ ! -z `echo "$phase_file_name" | grep "[0-9]-.*\]"` ]]
- then
- if [[ ! -z `echo "$phase_file_name" | grep "[0-9][0-9]-.*\]"` ]]
- then
- prefix=`echo $phase_file_name | sed "s/[0-9][0-9]-.*//"`
- else
- prefix=`echo $phase_file_name | sed "s/[0-9]-.*//"`
- fi
- else
- prefix="NONE"
- fi
- fi
-
- if [[ -z `echo "$list_prefix" | grep "$prefix"` ]]
- then
- list_prefix="$list_prefix $prefix"
- fi
-done
-
-
-for prefix in $list_prefix
-do
- if [ "$prefix" = "NONE" ]
- then
- prefix=""
- fi
-
- list_suffix=""
- list_phase_file_prefix=`find $1 -maxdepth 1 -iname "${prefix}[0-9]*.mhd"`
- for phase_file_prefix in $list_phase_file_prefix
- do
- phase_file_prefix_name=`basename $phase_file_prefix`
- if [[ ! -z `echo "$phase_file_prefix_name" | grep "__[0-9]"` ]]
- then
- suffix="NONE"
- else
- if [[ ! -z `echo "$phase_file_prefix_name" | grep "[0-9]-.*\]"` ]]
- then
- suffix=`echo $phase_file_prefix_name | sed "s/.*[0-9]-//;s/_\.mhd//;s/\.mhd//"`
- else
- suffix="NONE"
- fi
- fi
-
- if [[ -z `echo "$list_suffix" | grep "$suffix"` ]]
- then
- list_suffix="$list_suffix $suffix"
- fi
- done
-
- for suffix in $list_suffix
- do
- if [ "$suffix" = "NONE" ]
- then
- suffix=""
- fi
- nbph=`find $1 -maxdepth 1 -iname "*${prefix}*[0-9]*${suffix}*.mhd" | wc -l`
- orig=`find $1 -maxdepth 1 -iname "*${prefix}*[0-9]*${suffix}*.mhd" | sort | head -n 1`
- listph=`find $1 -maxdepth 1 -iname "*${prefix}*[0-9]*${suffix}*.[z*]raw" | sort`
-
- file_name_4D="${prefix}4D${suffix}.mhd"
-
- write_mhd_4D $1
-
- done
-
-done
-