corrections in mid-P scripts

[clitk.git] / scripts / create_midP-2.0.sh

diff --git a/scripts/create_midP-2.0.sh b/scripts/create_midP-2.0.sh
index 0b3947be5ddb94d1a16d0a7540db3cd0e67f2c80..239745f5348c9daade6feefb3108ace546fea60a 100755 (executable)
--- a/scripts/create_midP-2.0.sh
+++ b/scripts/create_midP-2.0.sh
@@ -1,4 +1,4 @@
-#!/bin/sh 
+#!/bin/sh -x
 
 ###############################################################################
 #
@@ -85,6 +85,7 @@ registration()
       clitkZeroVF -i $vf_in -o vf_zero.mhd
       abort_on_error registration $? clean_up_registration
 
+      patient_mask=$mask_dir/patient_mask_$phase_nb.mhd
       clitkCombineImage -i $vf_result -j vf_zero.mhd -m $patient_mask -o $vf_result
       abort_on_error registration $? clean_up_registration