#! /bin/bash -x
-MAX_THREADS=2
-
-check_threads()
-{
- while [[ $(jobs -p | wc -l) -ge $1 ]]; do
- jobs
- sleep 10
- done
-}
+source `dirname $0`/midp_common.sh
extract_patient()
{
dir=`dirname $1`
cd $dir
+ # import variables specific to each patient
+ source variables
+
resample_spacing=$2
resample_algo=$3
#
# variables exported in this scope
#
-# mask_dir: directory where all mask are kept
+# mask_dir: directory where all masks are kept
# regmask_in_list: list of registration mask files (inside lungs)
# regmask_out_list: list of registration mask files (outised lungs)
# reg_in_list: list of registration image files (inside lungs)
# reg_out_list: list of registration image files (outside lungs)
#
-# import variables specific to each patient
-source variables
-
if [ $1 != "using-as-lib" ]; then
motion_mask $1 $2 $3
fi