Moved from repository src2 to private2/dicom_scripts/clitk

[clitk.git] / scripts / midp_template.conf

diff --git a/scripts/midp_template.conf b/scripts/midp_template.conf
deleted file mode 100644 (file)
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--- a/scripts/midp_template.conf
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-###############################################################################
-#
-# FILE: midp_template.conf
-# AUTHOR: Rômulo Pinho 05/08/2011
-#
-# Template configuration file for create_midP-2.0.sh. Values between <> must be
-# changed according to the methods.
-#
-###############################################################################
-
-# output directories
-vf_dir="<VFDIR>"
-midp_dir="<MIDPDIR>"
-output_dir="<OUTDIR>"
-log_dir="<LOGDIR>"
-
-# script step to be executed (mask, registration, midp, all)
-# midp depends on registration, which depends on mask
-step="all"
-
-# indicate if midp images are computed with the in and out
-# VFs combined
-midp_combined_vf=0
-
-# indicate which masks are used in the registration (mm, lungs, patient). if
-# "patient", only the patient mask is used, and midp_combined_vf is
-# set to 1.
-mask_type="<TYPE>"
-
-# mask parameters
-#
-# interpolation algorithm for resampling (see clitkResampleImage)
-mask_interpolation_algorithm="<MASK_INTERPOLATION_ALGORITHM>"
-# interpolation spacing (in mm)
-mask_interpolation_spacing=<MASK_INTERPOLATION_SPACING>
-
-# registration method (blut, elastix)
-method="<METHOD>"
-
-# registration parameters (depend on registration method - see descriptions)
-#
-
-# b-spline spacing (blut, elastix)
-bspline_spacing=<BSPLINE_SPACING>
-
-# multi-resolution levels
-nb_levels=<NB_LEVELS>
-
-# number of histogram bins (blut, elastix)
-nb_hist_bins=<NB_HIST_BINS>
-
-# number of points (samples) to calculate metric
-# (blut: percentage of image size; elastix: absolute number)
-nb_samples=<NBSAMPLES>
-
-# algorithm used to sample points for the metric
-# (elastix: see docs)
-sampling_algo="<SAMPLING_ALGO>"
-
-# number of iterations (blut, elastix)
-nb_iter=<NB_ITER>
-
-# tolerance (stop condition for the metric) (blut)
-tolerance=<TOLERANCE>
-
-# metric used in the registration
-# (blut: see clitkBLUTDIR; elastix: see docs)
-metric="<METRIC>"
-
-# interpolation type
-# (blut: see clitkBLUTDIR; elastix: see docs)
-interpolator="<INTERPOLATOR>"
-
-# optmizer
-# (blut: see clitkBLUTDIR; elastix: see docs)
-optimizer="<OPTIMIZER>"