option to auto-detect motion mask's initial ellipse

[clitk.git] / scripts / midp_template.conf

diff --git a/scripts/midp_template.conf b/scripts/midp_template.conf
index 8fde2c849b24e88b7da289734117a3dfa0049ef8..be3e0aacc7c613e43a5bf565a30742cb90e6ef45 100644 (file)
--- a/scripts/midp_template.conf
+++ b/scripts/midp_template.conf
@@ -18,6 +18,15 @@ log_dir="<LOGDIR>"
 # midp depends on registration, which depends on mask
 step="all"
 
+# indicate if midp images are computed with the in and out
+# VFs combined
+midp_combined_vf=0
+
+# indicate which masks are used in the registration (mm, lungs, patient). if
+# "patient", only the patient mask is used, and midp_combined_vf is
+# set to 1.
+mask_type="<TYPE>"
+
 # mask parameters
 #
 # interpolation algorithm for resampling (see clitkResampleImage)