Bug #292

[clitk.git] / segmentation / CMakeLists.txt

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index ab75b33e1aa57bad0f0809922a6def7726ea2c4d..265985133670282b8c2970fd972d03523d146357 100644 (file)
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -4,12 +4,15 @@ INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
 
 #=========================================================
 
-#Add your ggo files to this list if they are used by vv
+# Add Libraries used in vv and clitk to avoid recompilation
 FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
     WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
     SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
 ENDFOREACH(clitkTool)
-ADD_LIBRARY(clitkSegmentationGgoLib clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx clitkAnatomicalFeatureDatabase.cxx ${GGO_C_FILES})
+ADD_LIBRARY(clitkSegmentationGgoLib
+            clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
+            clitkAnatomicalFeatureDatabase.cxx
+            ${GGO_C_FILES})
 
 #=========================================================
 
@@ -19,38 +22,38 @@ IF(CLITK_BUILD_SEGMENTATION)
     TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO)
 
     WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
-    ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx ${clitkFillMask_GGO_C})
+    ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C})
     TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO)
 
     ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO)
+    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO clitkSegmentationGgoLib)
 
     ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
     TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ITKIO)
 
-    WRAP_GGO(clitkExtractAirwayTreeInfo_GGO_C clitkExtractAirwayTreeInfo.ggo)
-    ADD_EXECUTABLE(clitkExtractAirwayTreeInfo clitkExtractAirwayTreeInfo.cxx ${clitkExtractAirwayTreeInfo_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractAirwayTreeInfo clitkCommon ITKIO)
+    # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo)
+    # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ITKIO)
 
     WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
     ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO)
+    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO clitkSegmentationGgoLib)
 
     WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
     ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO )
+    TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ITKStatistics ITKIO)
 
-    WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
-    ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon ITKIO )
+    # WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
+    # ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon ITKIO ITKStatistics)
 
     WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
-    ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx clitkMorphoMathGenericFilter.cxx ${clitkMorphoMath_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMorphoMath ITKIO clitkCommon)
+    ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ITKIO)
 
     WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
     ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkCommon ITKIO )
+    TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ITKIO)
 
     WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
     ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
@@ -79,4 +82,12 @@ IF(CLITK_BUILD_SEGMENTATION)
     WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
     ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
     TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ITKIO)
+
 ENDIF(CLITK_BUILD_SEGMENTATION)
+
+# ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ITKIO ITKStatistics)
+# ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ITKIO ITKStatistics)
+
+