Update CMakeLists after moving tools to deprecated

[clitk.git] / segmentation / CMakeLists.txt

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index d6812e0438f5d2482fded241aeff5dda4283fcd8..353dcf3dfab5dd1e0104a83740a583739bad6024 100644 (file)
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -1,9 +1,5 @@
 #=========================================================
 
-INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
-
-#=========================================================
-
 # Add Libraries used in vv and clitk to avoid recompilation
 FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
     WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
@@ -22,11 +18,6 @@ IF(CLITK_BUILD_SEGMENTATION)
     TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
     SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
 
-    WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
-    ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillMask)
-
     ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
     TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
@@ -50,13 +41,15 @@ IF(CLITK_BUILD_SEGMENTATION)
     TARGET_LINK_LIBRARIES(clitkBool clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkBool)
 
+    WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo)
+
     WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
-    ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
+    ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C}  ${clitkRelativePosition_GGO_C})
     TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES})
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinum)
 
     WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
-    ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C})
+    ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C} ${clitkRelativePosition_GGO_C})
     TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations)
 
@@ -70,21 +63,6 @@ IF(CLITK_BUILD_SEGMENTATION)
     TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
 
-    WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
-    ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoReconstruction)
-
-    WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
-    ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkCalculateDistanceMap)
-
-    WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
-    ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkLevelSetSegmentation)
-
     WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
     ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
     TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} )
@@ -105,11 +83,6 @@ IF(CLITK_BUILD_SEGMENTATION)
     TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
 
-    WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
-    ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillImageRegion)
-
     # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
     # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
     # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)