Robust detection of GDCM compilation by ITK: made it robust to ITK installation

[clitk.git] / segmentation / CMakeLists.txt

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index 353dcf3dfab5dd1e0104a83740a583739bad6024..5c16569f56b700e7104e1c3cec74786eb73c4d77 100644 (file)
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -1,13 +1,14 @@
 #=========================================================
 
 # Add Libraries used in vv and clitk to avoid recompilation
-FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
+FOREACH(clitkTool clitkExtractLung clitkExtractPatient clitkConnectedComponentLabeling clitkRegionGrowing)
     WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
     SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
 ENDFOREACH(clitkTool)
 ADD_LIBRARY(clitkSegmentationGgoLib
             clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
             clitkAnatomicalFeatureDatabase.cxx
+            clitkSliceBySliceRelativePositionFilter_uchar.cxx
             ${GGO_C_FILES})
 
 #=========================================================
@@ -15,87 +16,48 @@ ADD_LIBRARY(clitkSegmentationGgoLib
 IF(CLITK_BUILD_SEGMENTATION)
     WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
     ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon)
     SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
 
     ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon clitkSegmentationGgoLib)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
 
     ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
 
-    # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo)
-    # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C})
-    # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
-    # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractAirwaysTreeInfo)
-
     WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
     ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon clitkSegmentationGgoLib)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
 
-    WRAP_GGO(clitkBool_GGO_C clitkBool.ggo)
-    ADD_EXECUTABLE(clitkBool clitkBool.cxx ${clitkBool_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkBool clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkBool)
-
-    WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo)
-
-    WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
-    ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C}  ${clitkRelativePosition_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinum)
-
-    WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
-    ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C} ${clitkRelativePosition_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations)
-
-    WRAP_GGO(clitkExtractMediastinalVessels_GGO_C clitkExtractMediastinalVessels.ggo)
-    ADD_EXECUTABLE(clitkExtractMediastinalVessels clitkExtractMediastinalVessels.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractMediastinalVessels_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkExtractMediastinalVessels clitkSegmentationGgoLib clitkCommon vtkHybrid)
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinalVessels)
-
     WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
     ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
 
-    WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
-    ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} )
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkAnd)
-
-    WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
-    ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES})
-    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkRegionGrowing)
-
     WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
     ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
 
     WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
     ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
-
-    # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
-    # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
-    # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
-    # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter)
     
-    SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )  
+    WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
+    ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx ${clitkRegionGrowing_GGO_C} ${clitkRelativePosition_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon)
+
     INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
 
 ENDIF(CLITK_BUILD_SEGMENTATION)
 
 # ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
-# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
+# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ITKStatistics)
 # ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
-# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)
+# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ITKStatistics)