Include lib gdcm in each subfolder

[clitk.git] / segmentation / CMakeLists.txt

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index f278aa195be5889f01621a823fa098dd1d99f994..8638d10175c3c0fff41932585d395ea44deb1158 100644 (file)
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -1,13 +1,20 @@
+#=========================================================
+IF (CLITK_USE_SYSTEM_GDCM)
+  FIND_PACKAGE(GDCM REQUIRED)
+  SET(ITK_LIBRARIES ${ITK_LIBRARIES} gdcmDICT gdcmMSFF)
+ENDIF()
+  
 #=========================================================
 
 # Add Libraries used in vv and clitk to avoid recompilation
-FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
+FOREACH(clitkTool clitkExtractLung clitkExtractPatient clitkConnectedComponentLabeling clitkRegionGrowing)
     WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
     SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
 ENDFOREACH(clitkTool)
 ADD_LIBRARY(clitkSegmentationGgoLib
             clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
             clitkAnatomicalFeatureDatabase.cxx
+            clitkSliceBySliceRelativePositionFilter_uchar.cxx
             ${GGO_C_FILES})
 
 #=========================================================
@@ -31,11 +38,7 @@ IF(CLITK_BUILD_SEGMENTATION)
     TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
 
- 
-    WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo)
-
-
-     WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
+    WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
     ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
     TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
@@ -49,13 +52,11 @@ IF(CLITK_BUILD_SEGMENTATION)
     ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
     TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
-
-    # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
-    # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
-    # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
-    # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter)
     
-    SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )  
+    WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
+    ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx ${clitkRegionGrowing_GGO_C} ${clitkRelativePosition_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES})
+
     INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
 
 ENDIF(CLITK_BUILD_SEGMENTATION)