initial entry

[clitk.git] / segmentation / clitkDecomposeThroughErosionImageFilter.h

diff --git a/segmentation/clitkDecomposeThroughErosionImageFilter.h b/segmentation/clitkDecomposeThroughErosionImageFilter.h
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+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+#ifndef clitkDecomposeThroughErosionImageFilter_h
+#define clitkDecomposeThroughErosionImageFilter_h
+
+/* =================================================
+ * @file   clitkDecomposeThroughErosionImageFilter.h
+ * @author 
+ * @date   
+ * 
+ * @brief 
+ * 
+ ===================================================*/
+
+
+// clitk include
+#include "clitkIO.h"
+#include "clitkCommon.h"
+#include "clitkSetBackgroundImageFilter.h"
+
+//itk include
+#include "itkImageToImageFilter.h"
+#include "itkBinaryThresholdImageFilter.h"
+#include "itkBinaryErodeImageFilter.h"
+#include "itkStatisticsImageFilter.h"
+#include "itkConnectedComponentImageFilter.h"
+#include "itkCastImageFilter.h"
+#include "itkBinaryBallStructuringElement.h"
+#include "itkRelabelComponentImageFilter.h"
+
+namespace clitk 
+{
+
+  template <class InputImageType, class OutputImageType>
+  class ITK_EXPORT DecomposeThroughErosionImageFilter :
+    public itk::ImageToImageFilter<InputImageType, OutputImageType>
+  {
+  public:
+    //----------------------------------------
+    // ITK
+    //----------------------------------------
+    typedef DecomposeThroughErosionImageFilter                                                 Self;
+    typedef itk::ImageToImageFilter<InputImageType, OutputImageType>  Superclass;
+    typedef itk::SmartPointer<Self>                                   Pointer;
+    typedef itk::SmartPointer<const Self>                             ConstPointer;
+   
+    // Method for creation through the object factory
+    itkNewMacro(Self);  
+
+    // Run-time type information (and related methods)
+    itkTypeMacro( DecomposeThroughErosionImageFilter, ImageToImageFilter );
+
+    /** Dimension of the domain space. */
+    itkStaticConstMacro(InputImageDimension, unsigned int, Superclass::InputImageDimension);
+    itkStaticConstMacro(OutputImageDimension, unsigned int, Superclass::OutputImageDimension);
+
+    //----------------------------------------
+    // Typedefs
+    //----------------------------------------
+    typedef typename OutputImageType::RegionType OutputImageRegionType;
+    typedef int InternalPixelType;
+    typedef typename InputImageType::PixelType InputPixelType;
+    typedef typename OutputImageType::PixelType OutputPixelType;
+    typedef typename InputImageType::SizeType SizeType;
+
+    //----------------------------------------
+    // Set & Get
+    //----------------------------------------    
+    itkBooleanMacro(Verbose);
+    itkSetMacro( Verbose, bool);
+    itkGetConstReferenceMacro( Verbose, bool);
+    itkBooleanMacro(FullyConnected);
+    itkSetMacro( FullyConnected, bool);
+    itkGetConstReferenceMacro( FullyConnected, bool);
+    itkSetMacro( Lower, InputPixelType);
+    itkGetConstMacro( Lower, InputPixelType);
+    itkSetMacro( Upper, InputPixelType);
+    itkGetConstMacro( Upper, InputPixelType);
+    itkSetMacro( Inside, InternalPixelType);
+    itkGetConstMacro( Inside, InternalPixelType);  
+    itkSetMacro( Outside, InternalPixelType);
+    itkGetConstMacro( Outside, InternalPixelType);  
+    itkSetMacro( ErosionPaddingValue, OutputPixelType);
+    itkGetConstMacro( ErosionPaddingValue, OutputPixelType);  
+    void SetRadius ( const SizeType& s){ m_Radius=s; this->Modified();}
+    SizeType GetRadius(void){return m_Radius;}
+    itkSetMacro( NumberOfNewLabels, unsigned int);
+    itkGetConstMacro( NumberOfNewLabels, unsigned int);
+    itkSetMacro( MinimumObjectSize, unsigned int);
+    itkGetConstMacro( MinimumObjectSize, unsigned int);
+    itkSetMacro( MinimumNumberOfIterations, unsigned int);
+    itkGetConstMacro( MinimumNumberOfIterations, unsigned int);
+
+  protected:
+
+    //----------------------------------------  
+    // Constructor & Destructor
+    //----------------------------------------  
+    DecomposeThroughErosionImageFilter();
+    ~DecomposeThroughErosionImageFilter() {};
+
+    //----------------------------------------  
+    // Update
+    //----------------------------------------  
+    // Generate Data
+    void GenerateData(void);
+    void AllocateOutput(){;}
+
+    //     // Threaded Generate Data
+    //     void BeforeThreadedGenerateData(void );
+    //     void ThreadedGenerateData(const OutputImageRegionType & outputRegionForThread, int threadId );
+    //     void AfterThreadedGenerateData(void );
+    //     // Override defaults
+    //     virtual void GenerateInputRequestedRegion();
+    //     virtual void GenerateOutputInformation (void);
+    //     virtual void EnlargeOutputRequestedRegion(DataObject *data);
+    //     void AllocateOutputs();
+    //----------------------------------------  
+    // Data members
+    //----------------------------------------
+    bool m_Verbose;
+    bool m_FullyConnected;
+    InputPixelType m_Lower;
+    InputPixelType m_Upper;
+    OutputPixelType m_ErosionPaddingValue;
+    InputPixelType m_Inside;
+    InputPixelType m_Outside;
+    SizeType m_Radius;
+    unsigned int m_NumberOfNewLabels;
+    unsigned int m_MinimumObjectSize;
+    unsigned int m_MinimumNumberOfIterations;
+
+  };
+
+
+} // end namespace clitk
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "clitkDecomposeThroughErosionImageFilter.txx"
+#endif
+
+#endif // #define clitkDecomposeThroughErosionImageFilter_h
+
+