new Airway filter (experimental)

[clitk.git] / segmentation / clitkExtractAirwaysTreeInfoGenericFilter.txx

diff --git a/segmentation/clitkExtractAirwaysTreeInfoGenericFilter.txx b/segmentation/clitkExtractAirwaysTreeInfoGenericFilter.txx
new file mode 100644 (file)
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+++ b/segmentation/clitkExtractAirwaysTreeInfoGenericFilter.txx
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+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+  ======================================================================-====*/
+
+#ifndef CLITKEXTRACTAIRWAYTREEINFOSGENERICFILTER_TXX
+#define CLITKEXTRACTAIRWAYTREEINFOSGENERICFILTER_TXX
+
+#include "clitkImageCommon.h"
+  
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+clitk::ExtractAirwaysTreeInfoGenericFilter<ArgsInfoType>::ExtractAirwaysTreeInfoGenericFilter():
+  ImageToImageGenericFilter<Self>("ExtractAirwaysTreeInfo") 
+{
+  this->SetFilterBase(NULL);
+  // Default values
+  cmdline_parser_clitkExtractAirwaysTreeInfo_init(&mArgsInfo);
+  InitializeImageType<3>();
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+template<unsigned int Dim>
+void clitk::ExtractAirwaysTreeInfoGenericFilter<ArgsInfoType>::InitializeImageType() 
+{  
+  ADD_IMAGE_TYPE(Dim, uchar);
+  // ADD_IMAGE_TYPE(Dim, int);
+  // ADD_IMAGE_TYPE(Dim, float);
+}
+//--------------------------------------------------------------------
+  
+
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+void clitk::ExtractAirwaysTreeInfoGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a) 
+{
+  mArgsInfo=a;
+  SetIOVerbose(mArgsInfo.verbose_flag);
+  if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
+  if (mArgsInfo.input_given)  AddInputFilename(mArgsInfo.input_arg);
+  if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+template<class ImageType>
+void clitk::ExtractAirwaysTreeInfoGenericFilter<ArgsInfoType>::UpdateWithInputImageType() 
+{ 
+  // Reading input
+  typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
+
+  // Create filter
+  typedef clitk::ExtractAirwaysTreeInfoFilter<ImageType> FilterType;
+  typename FilterType::Pointer filter = FilterType::New();
+
+  // Set the filter (needed for example for threaded monitoring)
+  this->SetFilterBase(filter);
+    
+  // Set global Options 
+  filter->SetArgsInfo(mArgsInfo);
+  filter->SetInput(input);
+
+  // Go !
+  filter->Update();
+
+  // Write/Save results
+  typename ImageType::Pointer output = filter->GetOutput();
+  this->template SetNextOutput<ImageType>(output);
+  filter->WriteAFDB();
+}
+//--------------------------------------------------------------------
+
+#endif //#define CLITKEXTRACTAIRWAYTREEINFOSGENERICFILTER_TXX