MS compiler compatibility issues

[clitk.git] / segmentation / clitkExtractBones.ggo

diff --git a/segmentation/clitkExtractBones.ggo b/segmentation/clitkExtractBones.ggo
index 581392bc57db42572263cd2dff8bc99e53a5ba2e..cd737e7954fe8a4f7b33e9c231e8dc49a9f8706f 100644 (file)
--- a/segmentation/clitkExtractBones.ggo
+++ b/segmentation/clitkExtractBones.ggo
@@ -15,7 +15,16 @@ section "I/O"
 
 option "input"         i       "Input image filename"            string        yes
 option "output"        o       "Output image filename"           string        yes
-option "like"          l       "Resample like this image"        string        no
+option "afdb"           a      "Output Anatomical Feature DB (Carina position)"  string  no
+
+section "Smoothing (curvature anistropic diffusion)"
+
+option "smooth"                        -       "smooth input image"                    flag            off
+option "spacing"               -       "Use image spacing"                     flag            off
+option "cond"                  -       "Conductance parameter"                         double no       default="3.0"
+option "time"                  -       "Time step (0.125 for 2D and 0.0625 for 3D)"    double no       default="0.0625"
+option "iter"                  -       "Iterations"                            double no       default="5"
+
 
 section "Initial connected component labelling (CCL)"
 
@@ -31,4 +40,4 @@ option "upper2"               -       "Upper threshold for RG"                double  no      default="1500"
 option "radius2"       -       "Neighborhood radius"                   int     no      multiple        default="1" 
 option "sampleRate2"   -       "Sample rate of label image for RG: number of voxels to skip between seeds"     int     no      default="0" 
 
-option "autoCrop"      -       "Crop final mask to BoundingBox"        flag    off
+option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    on