remove tools (now in tests_dav)

[clitk.git] / segmentation / clitkExtractBones.ggo

diff --git a/segmentation/clitkExtractBones.ggo b/segmentation/clitkExtractBones.ggo
index 4938aa5639d71c303ea346c80631f947d8468bdb..d69f92fb6fcfab221fe2bbb341bcc9ccbf589d9b 100644 (file)
--- a/segmentation/clitkExtractBones.ggo
+++ b/segmentation/clitkExtractBones.ggo
@@ -10,12 +10,13 @@ option "verboseStep"    -  "Verbose each step"                flag          off
 option "writeStep"      w  "Write image at each step"    flag          off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
+option "verboseMemory"  -  "Display memory usage"         flag          off
 
 section "I/O"
 
 option "input"         i       "Input image filename"            string        yes
 option "output"        o       "Output image filename"           string        yes
-option "like"          l       "Resample like this image"        string        no
+option "afdb"           a      "Output Anatomical Feature DB (Carina position)"  string  no
 
 section "Smoothing (curvature anistropic diffusion)"
 
@@ -40,4 +41,8 @@ option "upper2"               -       "Upper threshold for RG"                double  no      default="1500"
 option "radius2"       -       "Neighborhood radius"                   int     no      multiple        default="1" 
 option "sampleRate2"   -       "Sample rate of label image for RG: number of voxels to skip between seeds"     int     no      default="0" 
 
-option "autoCrop"      -       "Crop final mask to BoundingBox"        flag    off
+section "Fill holes"
+option "doNotFillHoles"                -  "Do not fill holes if set"                 flag on
+option "dir"                   d  "Directions (axes) to perform filling (defaults to 2,1,0)"   int multiple no
+
+option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    off